BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0182.6
(451 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC214023 similar to GB|BAA23769.1|2668492|D89981 metal-transport... 351 4e-97
TC230130 similar to UP|AHM7_ARATH (Q9SH30) Potential copper-tran... 276 1e-74
AW569465 similar to GP|3549654|emb| metal-transporting P-type AT... 160 8e-40
TC228758 similar to UP|Q7Y051 (Q7Y051) Paa2 P-type ATPase, parti... 147 7e-36
TC207402 similar to UP|Q941L1 (Q941L1) Copper-transporting P-typ... 136 2e-32
TC207748 similar to UP|AHM1_ARATH (Q9M3H5) Potential cadmium/zin... 100 7e-29
AW132983 115 4e-26
TC207401 similar to UP|Q941L1 (Q941L1) Copper-transporting P-typ... 111 6e-25
BI944707 similar to PIR|B96660|B9 protein F2K11.18 [imported] - ... 79 5e-15
BE346110 weakly similar to PIR|B96660|B9 protein F2K11.18 [impor... 79 5e-15
TC205393 UP|Q9FVE8 (Q9FVE8) Plasma membrane Ca2+-ATPase, partial... 60 2e-09
BM893172 PIR|T52414|T5 H+-exporting ATPase (EC 3.6.3.6) plasma ... 58 8e-09
TC217364 plasma membrane Ca2+-ATPase 52 7e-07
TC205560 similar to GB|BAA97361.1|8843813|AB023042 Ca2+-transpor... 50 2e-06
BM177530 homologue to GP|16508164|g type IIB calcium ATPase {Med... 49 4e-06
TC206217 similar to UP|ACA9_ARATH (Q9LU41) Potential calcium-tra... 49 5e-06
BM085703 homologue to SP|Q9LIK7|ACA Potential calcium-transporti... 49 6e-06
TC230973 homologue to UP|Q7Y068 (Q7Y068) Plasma membrane H+-ATPa... 48 1e-05
BI317184 similar to GP|13374852|emb metal-transporting ATPase-li... 38 0.008
TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase (Fragme... 35 0.090
>TC214023 similar to GB|BAA23769.1|2668492|D89981 metal-transporting P-type
ATPase {Arabidopsis thaliana;} , partial (21%)
Length = 828
Score = 351 bits (900), Expect = 4e-97
Identities = 184/219 (84%), Positives = 203/219 (92%), Gaps = 2/219 (0%)
Frame = +2
Query: 133 DVEILRLAAAVESNSVHPVGKAIVDAAQAVNCLDAKVVDGTFLEEPGSGAVATIGNRKVY 192
DVE+LRLAAAVE+NSVHPVGKAIVDAAQA NC +AKV DGTFLEEPGSGAVATI ++KV
Sbjct: 2 DVEVLRLAAAVETNSVHPVGKAIVDAAQAANCHNAKVKDGTFLEEPGSGAVATIYDKKVS 181
Query: 193 VGTLEWITRHGINNNILQEVE-CKNESFVYVGVNDTLAGLIYFEDEVREDARHVVDTLSK 251
VGTLEWITRHG+ N+I QEVE N+SFVYVGV+DTLAGLIYFEDE+REDAR VVD LSK
Sbjct: 182 VGTLEWITRHGVINSIHQEVEKSNNQSFVYVGVDDTLAGLIYFEDEIREDARDVVDRLSK 361
Query: 252 QDISVYMLSGDKRNAAEHVASLVGIPKDKVLSGVKPDQKKKFINELQKD-NIVAMVGDGI 310
Q+I VYMLSGDKRNAAEHVASLVGIPK+KVLS VKPD+KKKFINELQKD NIVAMVGDGI
Sbjct: 362 QNIGVYMLSGDKRNAAEHVASLVGIPKEKVLSEVKPDEKKKFINELQKDNNIVAMVGDGI 541
Query: 311 NDAAALAASHIGIALGGGVGAASEVSSIILMRDHLSQLL 349
NDAAALA+SH+GIALGGGVGAASEVSSI+LMR+ LSQ++
Sbjct: 542 NDAAALASSHVGIALGGGVGAASEVSSIVLMRNQLSQVI 658
>TC230130 similar to UP|AHM7_ARATH (Q9SH30) Potential copper-transporting
ATPase 3 , partial (43%)
Length = 1409
Score = 276 bits (707), Expect = 1e-74
Identities = 173/442 (39%), Positives = 249/442 (56%), Gaps = 11/442 (2%)
Frame = +1
Query: 9 VMAVSVTTFTFWSLFGT-HILPATAYQGSAVS--LALQFACSVLVVACPCALGLATPTAV 65
V+ +S TT+ W L G H P + S S LALQF SV+V+ACPCALGLATPTAV
Sbjct: 1 VIIISFTTWLAWFLAGKYHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAV 180
Query: 66 LVGTSLGAKRGLLLRGGNILEKFAMVNAVVFDKTGTLTVGRPVVTKVVASTCIENANSSQ 125
+VGT +GA +G+L++GG LE V+ +VFDKTGTLTVG+PV+ + T
Sbjct: 181 MVGTGVGASQGVLIKGGQALESAHKVDCIVFDKTGTLTVGKPVIVRTELLT--------- 333
Query: 126 TIENALSDVEILRLAAAVESNSVHPVGKAIVDAAQAVNCLDAKVVDGT--FLEEPGSGAV 183
+ E L AA E NS HP+ KA+V+ A+ + F+ G G
Sbjct: 334 ----KMVLQEFYELVAAAEVNSEHPLAKAVVEYAKRFRDEENPSWPEARDFVSITGHGVK 501
Query: 184 ATIGNRKVYVGTLEWITRHGIN-----NNILQEVECKNESFVYVGVNDTLAGLIYFEDEV 238
A++ N+++ VG H I IL E E ++ + V +N +AG++ D +
Sbjct: 502 ASVHNKEIIVGNKSLFADHNIAIPDDAEYILAEAEKMAQTGIVVSINGKVAGVLAVSDPL 681
Query: 239 REDARHVVDTLSKQDISVYMLSGDKRNAAEHVASLVGIPKDKVLSGVKPDQKKKFINELQ 298
+ A+ V+ L I M++GD A +A VGI + V++ KPDQK + + +LQ
Sbjct: 682 KPGAQEVISILKSMKIKSIMVTGDNFGTASSIAREVGI--ENVIAEAKPDQKAEKVKDLQ 855
Query: 299 KDNI-VAMVGDGINDAAALAASHIGIALGGGVGAASEVSSIILMRDHLSQLLDALELSRL 357
VAMVGDGIND+ AL A+ +G+A+G G A E + I+LM+ +L ++ A++LSR
Sbjct: 856 ASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRK 1035
Query: 358 TMTTVKQNLWWAFIYNIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRF 417
T + ++ N +WA YN++GIPIAAG LFP L P IAGA M SS+ V+ SLLL++
Sbjct: 1036TFSRIRLNYFWALGYNLLGIPIAAGALFPSTRFRLPPWIAGAAMAASSVSVVCCSLLLKY 1215
Query: 418 KFSSKQKQILDMLPKTKIHVDS 439
++ + LD L I V+S
Sbjct: 1216---YRRPRKLDNLEIRGIRVES 1272
>AW569465 similar to GP|3549654|emb| metal-transporting P-type ATPase
(fragment) {Arabidopsis thaliana}, partial (8%)
Length = 395
Score = 160 bits (406), Expect = 8e-40
Identities = 83/100 (83%), Positives = 88/100 (88%)
Frame = +3
Query: 351 ALELSRLTMTTVKQNLWWAFIYNIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMT 410
ALELSRLTM T+KQNLWWAFIYNIVGIPIAAGVLFP+NGT+LTPSIAGALMGLSSIGVMT
Sbjct: 3 ALELSRLTMNTIKQNLWWAFIYNIVGIPIAAGVLFPINGTVLTPSIAGALMGLSSIGVMT 182
Query: 411 NSLLLRFKFSSKQKQILDMLPKTKIHVDSDRTPQNQKMKY 450
NSLLLRFKFSSKQKQI + PKTKIHV QNQK +
Sbjct: 183 NSLLLRFKFSSKQKQIHSISPKTKIHV-----AQNQKTNH 287
>TC228758 similar to UP|Q7Y051 (Q7Y051) Paa2 P-type ATPase, partial (19%)
Length = 845
Score = 147 bits (372), Expect = 7e-36
Identities = 88/190 (46%), Positives = 120/190 (62%), Gaps = 3/190 (1%)
Frame = +3
Query: 254 ISVYMLSGDKRNAAEHVASLVGIPKDKVLSGVKPDQKKKFINELQK-DNIVAMVGDGIND 312
I +LSGD+ A VA VGI D V + + P QK FI+ L+ + VAMVGDGIND
Sbjct: 9 IKTVLLSGDREEAVATVADTVGIENDFVKASLSPQQKSGFISSLKAAGHHVAMVGDGIND 188
Query: 313 AAALAASHIGIALGGGV--GAASEVSSIILMRDHLSQLLDALELSRLTMTTVKQNLWWAF 370
A +LA + +GIAL AAS+ +SIIL+ + +SQ++DAL+L++ TM V QNL WA
Sbjct: 189 APSLAVADVGIALQNEAQENAASDAASIILLGNKISQVVDALDLAQATMGKVYQNLSWAV 368
Query: 371 IYNIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRFKFSSKQKQILDML 430
YN+V IPIAAGVL P +TPS++G LM LSSI V+ NSLLL+ S +++ +
Sbjct: 369 AYNVVAIPIAAGVLLPHFDFAMTPSLSGGLMALSSIFVVGNSLLLQLHGSQISRKVGSTI 548
Query: 431 PKTKIHVDSD 440
H ++D
Sbjct: 549 EIISSHSNTD 578
>TC207402 similar to UP|Q941L1 (Q941L1) Copper-transporting P-type ATPase,
partial (19%)
Length = 721
Score = 136 bits (342), Expect = 2e-32
Identities = 77/187 (41%), Positives = 115/187 (61%), Gaps = 1/187 (0%)
Frame = +1
Query: 245 VVDTLSKQDISVYMLSGDKRNAAEHVASLVGIPKDKVLSGVKPDQKKKFINELQKD-NIV 303
V++ L K ++ M++GD A VA VGI V + V P K + QKD +I
Sbjct: 10 VIEGLQKMGVTPVMVTGDNWRTARAVAKEVGI--QDVRAEVMPAGKADVVRSFQKDGSIA 183
Query: 304 AMVGDGINDAAALAASHIGIALGGGVGAASEVSSIILMRDHLSQLLDALELSRLTMTTVK 363
AMVGDGIND+ ALAA+ +G+A+G G A E + +LMR++L ++ A++LSR T + ++
Sbjct: 184 AMVGDGINDSPALAAADVGMAIGAGTDIAIEAAEYVLMRNNLEDVITAIDLSRKTFSRIR 363
Query: 364 QNLWWAFIYNIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRFKFSSKQ 423
N +A YN+V IP+AAGV +P G L P +AGA M LSS+ V+ +SLLL+ +
Sbjct: 364 LNYVFAMAYNVVAIPVAAGVFYPSLGIKLPPWVAGACMALSSVSVVCSSLLLKRYKRPRL 543
Query: 424 KQILDML 430
IL+++
Sbjct: 544 TTILEII 564
>TC207748 similar to UP|AHM1_ARATH (Q9M3H5) Potential
cadmium/zinc-transporting ATPase HMA1 , partial (43%)
Length = 1479
Score = 100 bits (249), Expect(2) = 7e-29
Identities = 85/286 (29%), Positives = 143/286 (49%), Gaps = 30/286 (10%)
Frame = +1
Query: 137 LRLAAAVESNSVHPVGKAIVDAAQAVNCLDAKVVDGTFLEEPGSGAVATIGN-------- 188
L +AAA+E + HP+G+A+VD ++ + V + PG G AT+ +
Sbjct: 229 LAVAAAMEKGTTHPIGRAVVDHSEGKDLPSISVESFEYF--PGRGLTATVNSIESGTGGA 402
Query: 189 --RKVYVGTLEWITR----HGINNNILQEVECKNESFVYV----GVNDTLAGLIYFEDEV 238
K +G++++IT + I + V + YV VN + LI+ ED
Sbjct: 403 KLLKASLGSIDFITSFCQSEVESEKIKEAVNTSSYGSEYVHAALSVNQKVT-LIHLEDRP 579
Query: 239 REDARHVVDTLSKQ-DISVYMLSGDKRNAAEHVASLVGIPKDKVLSGVKPDQKKKFINEL 297
R +V+ L + V ML+GD ++A VAS VGI ++ +KP+ K + ++
Sbjct: 580 RPGVSNVIQELQDEAKFRVMMLTGDHESSARRVASAVGI--NEFHCNLKPEDKLSHVKDI 753
Query: 298 QKD--NIVAMVGDGINDAAALAASHIGIALGGGVGA-ASEVSSIILMRDHLSQLLDALEL 354
+D + MVG+GINDA ALAA+ +GI L A A V+ ++L+R+ +S + +
Sbjct: 754 SRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRESISAVPFCIAK 933
Query: 355 SRLTMTTVKQN-------LWWAFIYNIVG-IPIAAGVLFPVNGTML 392
SR T + +KQN + A + +++G +P+ VL GT+L
Sbjct: 934 SRQTTSLIKQNVALALTSILMASLPSVLGFLPLWLTVLLHEGGTLL 1071
Score = 45.1 bits (105), Expect(2) = 7e-29
Identities = 20/42 (47%), Positives = 29/42 (68%)
Frame = +2
Query: 64 AVLVGTSLGAKRGLLLRGGNILEKFAMVNAVVFDKTGTLTVG 105
A + S A++G+LL+GG++L+ A + V FDKTGTLT G
Sbjct: 2 AYAIAISSCARKGILLKGGHVLDALATCHTVAFDKTGTLTTG 127
>AW132983
Length = 396
Score = 115 bits (288), Expect = 4e-26
Identities = 55/65 (84%), Positives = 57/65 (87%)
Frame = +3
Query: 1 VAGYFTYGVMAVSVTTFTFWSLFGTHILPATAYQGSAVSLALQFACSVLVVACPCALGLA 60
VAG+FTYGVMA S TFTFWSL+GTHILP YQG AVSLALQ ACSVLVVACPCALGLA
Sbjct: 201 VAGHFTYGVMATSAATFTFWSLYGTHILPPALYQGRAVSLALQLACSVLVVACPCALGLA 380
Query: 61 TPTAV 65
TPTAV
Sbjct: 381 TPTAV 395
>TC207401 similar to UP|Q941L1 (Q941L1) Copper-transporting P-type ATPase,
partial (12%)
Length = 532
Score = 111 bits (278), Expect = 6e-25
Identities = 57/124 (45%), Positives = 83/124 (65%)
Frame = +1
Query: 307 GDGINDAAALAASHIGIALGGGVGAASEVSSIILMRDHLSQLLDALELSRLTMTTVKQNL 366
GDGIND+ ALAA+ +G+A+G G A E ++ +LMRD+L ++ A++LS+ T ++ N
Sbjct: 7 GDGINDSPALAAADVGMAIGAGTDVAIEAANYVLMRDNLEDVITAIDLSKKTFFRIRLNY 186
Query: 367 WWAFIYNIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRFKFSSKQKQI 426
+A YN+V IP+AAGV FP G L P +AGA M LSS+ V+ +SLLLR K I
Sbjct: 187 VFAMAYNVVAIPVAAGVFFPWLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRKPKLTTI 366
Query: 427 LDML 430
L+++
Sbjct: 367 LEIV 378
>BI944707 similar to PIR|B96660|B9 protein F2K11.18 [imported] - Arabidopsis
thaliana, partial (9%)
Length = 362
Score = 78.6 bits (192), Expect = 5e-15
Identities = 42/85 (49%), Positives = 57/85 (66%), Gaps = 6/85 (7%)
Frame = +1
Query: 9 VMAVSVTTFTFW------SLFGTHILPATAYQGSAVSLALQFACSVLVVACPCALGLATP 62
V+ V++ T+ W ++ H +P A LALQFA SVLVVACPCALGLATP
Sbjct: 106 VVVVALITWLGWFIPGEAGIYPKHWIPKAM---DAFELALQFAISVLVVACPCALGLATP 276
Query: 63 TAVLVGTSLGAKRGLLLRGGNILEK 87
TAV+V + +GA +G+L++GG+ LEK
Sbjct: 277 TAVMVASGMGASQGVLIKGGDALEK 351
>BE346110 weakly similar to PIR|B96660|B9 protein F2K11.18 [imported] -
Arabidopsis thaliana, partial (12%)
Length = 562
Score = 78.6 bits (192), Expect = 5e-15
Identities = 57/187 (30%), Positives = 96/187 (50%), Gaps = 8/187 (4%)
Frame = +2
Query: 187 GNRKVYVGTLEWITRHGINNNILQEVE---CKNE----SFVYVGVNDTLAGLIYFEDEVR 239
G+R V VG + H N I EVE +NE + + V ++ +AG D V+
Sbjct: 2 GDRTVVVGNKRLM--HACNVPICSEVEKYISENEILATTCIVVSIDGKIAGAFSVTDPVK 175
Query: 240 EDARHVVDTLSKQDISVYMLSGDKRNAAEHVASLVGIPKDKVLSGVKPDQKKKFINELQK 299
+A+ V+ L IS +++GD A +A+ +GI D+V + P+ K + +LQ
Sbjct: 176 PEAKRVIFFLHSMGISSMIVTGDNCATATAIANEMGI--DEVFAETDPEGKADKVKDLQM 349
Query: 300 DNI-VAMVGDGINDAAALAASHIGIALGGGVGAASEVSSIILMRDHLSQLLDALELSRLT 358
+ VAMVGDG+ND+ L A+ +G+A G G A + I ++ ++ +++SR T
Sbjct: 350 TGMTVAMVGDGMNDSPDLLAADVGMATGAGTDIAIAAAVIASVKRRFEDVIIDIDISRTT 529
Query: 359 MTTVKQN 365
M+ + N
Sbjct: 530 MSRILLN 550
>TC205393 UP|Q9FVE8 (Q9FVE8) Plasma membrane Ca2+-ATPase, partial (55%)
Length = 2009
Score = 60.5 bits (145), Expect = 2e-09
Identities = 46/179 (25%), Positives = 79/179 (43%), Gaps = 28/179 (15%)
Frame = +2
Query: 227 TLAGLIYFEDEVREDARHVVDTLSKQDISVYMLSGDKRNAAEHVASLVGI---------- 276
T G+I +D VR + V I+V M++GD N A+ +A GI
Sbjct: 578 TCIGVIGIKDPVRPGVKESVAM*RSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEG 757
Query: 277 ---------------PKDKVLSGVKPDQKKKFINELQKD--NIVAMVGDGINDAAALAAS 319
PK +V++ P K + L+ +VA+ GDG NDA AL +
Sbjct: 758 PEFREKSQKELLELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEA 937
Query: 320 HIGIALG-GGVGAASEVSSIILMRDHLSQLLDALELSRLTMTTVKQNLWWAFIYNIVGI 377
IG+A+G G A E + +I++ D+ S ++ + R +++ + + N+V +
Sbjct: 938 DIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVAL 1114
>BM893172 PIR|T52414|T5 H+-exporting ATPase (EC 3.6.3.6) plasma membrane
[imported] - Prunus persica, partial (14%)
Length = 427
Score = 58.2 bits (139), Expect = 8e-09
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Frame = -2
Query: 272 SLVGIPKDKVL------SGVKPDQKKKFINELQ-KDNIVAMVGDGINDAAALAASHIGIA 324
S+V +P D+++ +GV P+ K + + LQ + +I M GDG+NDA AL + IGIA
Sbjct: 312 SIVALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIA 133
Query: 325 LGGGVGAASEVSSIILMRDHLSQLLDALELSRLTMTTVK 363
+ AA S I+L LS ++ A+ SR +K
Sbjct: 132 VADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMK 16
>TC217364 plasma membrane Ca2+-ATPase
Length = 1375
Score = 51.6 bits (122), Expect = 7e-07
Identities = 29/105 (27%), Positives = 55/105 (51%), Gaps = 3/105 (2%)
Frame = +3
Query: 276 IPKDKVLSGVKPDQKKKFINELQK--DNIVAMVGDGINDAAALAASHIGIALG-GGVGAA 332
IPK +V++ P K + L+ +V++ GDG NDA AL + IG+A+G G A
Sbjct: 69 IPKIQVMARSSPMDKHTLVKHLRTTFQEVVSVTGDGTNDAPALHEADIGLAMGIAGTEVA 248
Query: 333 SEVSSIILMRDHLSQLLDALELSRLTMTTVKQNLWWAFIYNIVGI 377
E + +I++ D+ S ++ + R +++ + + N+V +
Sbjct: 249 KESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVAL 383
>TC205560 similar to GB|BAA97361.1|8843813|AB023042 Ca2+-transporting
ATPase-like protein {Arabidopsis thaliana;} , partial
(27%)
Length = 1356
Score = 50.4 bits (119), Expect = 2e-06
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Frame = +1
Query: 280 KVLSGVKPDQKKKFINELQ-KDNIVAMVGDGINDAAALAASHIGIALG-GGVGAASEVSS 337
+V+ P+ K + L+ K ++VA+ GDG NDA AL + IG+A+G G A E S
Sbjct: 7 QVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSD 186
Query: 338 IILMRDHLSQLLDALELSRLTMTTVKQNLWWAFIYNIVGIPI 379
II++ D+ + ++ + R +++ + + N+ + I
Sbjct: 187 IIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVI 312
>BM177530 homologue to GP|16508164|g type IIB calcium ATPase {Medicago
truncatula}, partial (13%)
Length = 422
Score = 49.3 bits (116), Expect = 4e-06
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Frame = +2
Query: 276 IPKDKVLSGVKPDQKKKFINELQKD-NIVAMVGDGINDAAALAASHIGIALG-GGVGAAS 333
+ K +V++ P K + L+K ++VA+ GDG NDA AL + IG+++G G A
Sbjct: 5 VEKIRVMARSSPLDKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAK 184
Query: 334 EVSSIILMRDHLSQLLDALELSRLTMTTVKQNLWWAFIYNIVGIPI 379
E S I+++ D+ + + L R +++ + + N+ + I
Sbjct: 185 ESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVI 322
>TC206217 similar to UP|ACA9_ARATH (Q9LU41) Potential calcium-transporting
ATPase 9, plasma membrane-type (Ca(2+)-ATPase isoform
9) , partial (32%)
Length = 1383
Score = 48.9 bits (115), Expect = 5e-06
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Frame = +1
Query: 278 KDKVLSGVKPDQKKKFINELQKDN-IVAMVGDGINDAAALAASHIGIALG-GGVGAASEV 335
K V+ P+ K + L+K +VA+ GDG NDA AL + IG+++G G A E
Sbjct: 109 KITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKES 288
Query: 336 SSIILMRDHLSQLLDALELSRLTMTTVKQNLWWAFIYNIVGIPI 379
S II++ D+ + ++ + R +++ + + N+ + I
Sbjct: 289 SDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVI 420
>BM085703 homologue to SP|Q9LIK7|ACA Potential calcium-transporting ATPase 13
plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase
isoform, partial (12%)
Length = 411
Score = 48.5 bits (114), Expect = 6e-06
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +3
Query: 299 KDNIVAMVGDGINDAAALAASHIGIALG-GGVGAASEVSSIILMRDHLSQLLDALELSRL 357
K ++VA+ GDG NDA AL + IG+++G G A E S I+++ D+ + ++ L R
Sbjct: 3 KGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLRWGRC 182
Query: 358 TMTTVKQNLWWAFIYNIVGIPI 379
+++ + + N+ + I
Sbjct: 183 VYNNIQKFIQFQLTVNVAALAI 248
>TC230973 homologue to UP|Q7Y068 (Q7Y068) Plasma membrane H+-ATPase, partial
(22%)
Length = 654
Score = 47.8 bits (112), Expect = 1e-05
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 16/86 (18%)
Frame = +3
Query: 269 HVASLVGIPKDKVLS---------------GVKPDQKKKFINELQ-KDNIVAMVGDGIND 312
H+ SL+G KD +S GV P+ K + + LQ + +I M GDG+ND
Sbjct: 396 HLPSLLGQSKDAAVSAVPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVND 575
Query: 313 AAALAASHIGIALGGGVGAASEVSSI 338
A AL + IGIA+ AA S I
Sbjct: 576 APALKKADIGIAVADATDAARSASDI 653
>BI317184 similar to GP|13374852|emb metal-transporting ATPase-like protein
{Arabidopsis thaliana}, partial (4%)
Length = 407
Score = 38.1 bits (87), Expect = 0.008
Identities = 21/38 (55%), Positives = 27/38 (70%), Gaps = 2/38 (5%)
Frame = +1
Query: 306 VGDGINDAAALAASHIGIALGGGV--GAASEVSSIILM 341
VGDGINDA +LA + +GIAL AAS+ +SIIL+
Sbjct: 280 VGDGINDAPSLAVADVGIALQNEAQENAASDAASIILL 393
>TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase (Fragment) ,
complete
Length = 1826
Score = 34.7 bits (78), Expect = 0.090
Identities = 27/95 (28%), Positives = 43/95 (44%)
Frame = +3
Query: 113 VASTCIENANSSQTIENALSDVEILRLAAAVESNSVHPVGKAIVDAAQAVNCLDAKVVDG 172
+A C E+ ++++T N L +V +E + V +A++D + V D V+
Sbjct: 3 LAVMCHEDVDATRTTSNHLIEV--------IEVLGIEAVRRALLDELRVVISFDGSYVNY 158
Query: 173 TFLEEPGSGAVATIGNRKVYVGTLEWITRHGINNN 207
L A + + Y G L ITRHGIN N
Sbjct: 159 RHL--------AILCDTMTYRGHLMAITRHGINRN 239
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.134 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,410,823
Number of Sequences: 63676
Number of extensions: 200808
Number of successful extensions: 977
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of query: 451
length of database: 12,639,632
effective HSP length: 100
effective length of query: 351
effective length of database: 6,272,032
effective search space: 2201483232
effective search space used: 2201483232
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0182.6