BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0181.4
(987 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BM885356 55 2e-07
BI317050 45 2e-04
TC220401 37 0.056
TC219576 similar to UP|Q6ZFI5 (Q6ZFI5) Parathymosin-like, partia... 37 0.056
NP595172 polyprotein [Glycine max] 35 0.13
TC222980 similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (4%) 34 0.28
TC231423 similar to UP|Q9LID4 (Q9LID4) Similarity to disease res... 34 0.36
TC214106 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 33 0.48
BQ742762 PIR|T06782|T0 extensin - soybean, partial (32%) 33 0.62
BE806144 33 0.62
TC214142 similar to PIR|T49142|T49142 CCR4-associated factor 1-l... 33 0.81
TC224968 similar to UP|Q39835 (Q39835) Extensin, partial (44%) 32 1.1
TC225027 similar to UP|Q39835 (Q39835) Extensin, partial (49%) 32 1.1
TC225016 similar to UP|Q39835 (Q39835) Extensin, partial (32%) 32 1.1
TC224876 weakly similar to UP|Q39835 (Q39835) Extensin, partial ... 32 1.1
TC224792 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich gly... 32 1.1
TC221928 similar to UP|Q9SN46 (Q9SN46) Extensin-like protein, pa... 32 1.4
BQ613012 32 1.4
TC214303 similar to UP|Q9T0K5 (Q9T0K5) Extensin-like protein, pa... 32 1.8
TC214150 homologue to UP|Q9ZTV1 (Q9ZTV1) Chaperonin 60 alpha sub... 32 1.8
>BM885356
Length = 420
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/96 (36%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Frame = -3
Query: 78 PSQTQHSALSSPP-----------LKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFI 126
PSQTQ S P L + +F GSD T W+ FF H P R
Sbjct: 316 PSQTQPEMPSFPAAGPSAAPHRLKLDVPRFDGSDATGWIFKITQFFEYHTTPDHERLTIA 137
Query: 127 ALYLEGQALTWFNLWRH---QLDSWEKFREVFKLQF 159
+ Y+EGQAL WF W H QL SW F +F
Sbjct: 136 SFYMEGQALAWFQ-WMHRNGQLSSWPAFLHALHSRF 32
>BI317050
Length = 425
Score = 44.7 bits (104), Expect = 2e-04
Identities = 24/73 (32%), Positives = 40/73 (53%), Gaps = 2/73 (2%)
Frame = +3
Query: 91 LKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFN-LWRH-QLDSW 148
L + +F ++ + FF H P + R Q + YL+G+AL+WF L+R+ QL SW
Sbjct: 12 LDVPRFDDTNAPTLIFKISQFFDYHRTPEDERLQVTSFYLDGEALSWFQWLYRNDQLTSW 191
Query: 149 EKFREVFKLQFIQ 161
F + +++F Q
Sbjct: 192 SSFLQALEMRFAQ 230
>TC220401
Length = 1286
Score = 36.6 bits (83), Expect = 0.056
Identities = 25/94 (26%), Positives = 40/94 (41%)
Frame = +1
Query: 42 ISGLIDQVSFLNGHLRSIPPQPPPIYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDP 101
I+ LIDQ++ + + P P P +P+P H H L +P +F+G DP
Sbjct: 145 INSLIDQIAAITTN----PSSPSPSSQPSPSPIHR-----PHMKLDAP-----RFNGHDP 282
Query: 102 TFWLLNTEVFFLQHPWPLELRFQFIALYLEGQAL 135
W+ FF + + Y++G AL
Sbjct: 283 LGWIFKISQFFDYQTILEQEPLTVASFYMDGSAL 384
>TC219576 similar to UP|Q6ZFI5 (Q6ZFI5) Parathymosin-like, partial (12%)
Length = 556
Score = 36.6 bits (83), Expect = 0.056
Identities = 28/105 (26%), Positives = 43/105 (40%)
Frame = +1
Query: 14 PTVLDAIDAKLASMATKLQVDFDTRISAISGLIDQVSFLNGHLRSIPPQPPPIYHHNPAP 73
P + ++ + + KL +D + S I ID + L ++ P PPP++ AP
Sbjct: 94 PNSITTVNGVVQQLEAKLGLDLSHKASFIRDQIDHL--LRSQPQTFAPHPPPLHKDYFAP 267
Query: 74 YHNYPSQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWP 118
+ T H A P F L+ E+ FLQHP P
Sbjct: 268 HTQLHFPTTHFA---------------PHF-ALHDEINFLQHPHP 354
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 35.4 bits (80), Expect = 0.13
Identities = 32/147 (21%), Positives = 62/147 (41%), Gaps = 4/147 (2%)
Frame = +1
Query: 17 LDAIDAKLASMATKLQVDFDTRISAISGLIDQVSFLNGHLRSIPPQPPPIYHHNPAPYHN 76
++ ++A + K++V T S S L +S + L++IP + H + N
Sbjct: 94 IERLEATNHAQMEKIEVMQSTNDSQFSQLNAVMSQVLQRLQNIP-----MSSHGAS---N 249
Query: 77 YPSQTQHSALSSPPLKLI--KFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQA 134
+ Q S+ +KL +F G + W+ E FF + P R +++L+
Sbjct: 250 SQKEQQRSSFQVRSVKLDFPRFDGKNVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDV 429
Query: 135 LTWFNLWR--HQLDSWEKFREVFKLQF 159
+ W+ + + SW+ F +L F
Sbjct: 430 VPWYQMLQKTEPFSSWQAFTRALELDF 510
>TC222980 similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (4%)
Length = 662
Score = 34.3 bits (77), Expect = 0.28
Identities = 20/87 (22%), Positives = 38/87 (42%), Gaps = 2/87 (2%)
Frame = +3
Query: 75 HNYPSQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQA 134
+N+P Q ++ + P L GSD W+ E FF H P E R +++L+ +
Sbjct: 315 NNHPFQVRNVKIDFPIL-----DGSDVLQWIFKAEQFFNYHKTPGEQRLIIASIHLDKEV 479
Query: 135 LTWFNLW--RHQLDSWEKFREVFKLQF 159
+ + + + +W F + +F
Sbjct: 480 VPCYQMMTRENSFKTWIAFTRALETEF 560
>TC231423 similar to UP|Q9LID4 (Q9LID4) Similarity to disease resistance
response protein, partial (40%)
Length = 650
Score = 33.9 bits (76), Expect = 0.36
Identities = 15/42 (35%), Positives = 21/42 (49%)
Frame = +1
Query: 63 PPPIYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDPTFW 104
P P H +P P ++PS +S LS PP + + S P W
Sbjct: 40 PIPSQHSSPLPSSSFPSSFSYSPLSPPPKHTVSRAPSPPPPW 165
>TC214106 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (22%)
Length = 1296
Score = 33.5 bits (75), Expect = 0.48
Identities = 17/59 (28%), Positives = 25/59 (41%)
Frame = +1
Query: 60 PPQPPPIYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWP 118
PP PPP H+P P +P+ SPP ++++ P T V+ P P
Sbjct: 430 PPSPPPCEEHSPPPPSPHPAPYHPPPSPSPPPPPVQYNSPPPPSPPPPTPVYHYNSPPP 606
Score = 32.3 bits (72), Expect = 1.1
Identities = 13/42 (30%), Positives = 21/42 (49%)
Frame = +1
Query: 60 PPQPPPIYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDP 101
PP P P+YH+N P ++P T PP+ + ++ P
Sbjct: 562 PPPPTPVYHYNSPPPPSFPPPTPVYEGPLPPVIGVSYASPPP 687
Score = 29.3 bits (64), Expect = 9.0
Identities = 15/37 (40%), Positives = 20/37 (53%), Gaps = 4/37 (10%)
Frame = +1
Query: 58 SIPPQPPPIYHHNPAP----YHNYPSQTQHSALSSPP 90
S PP PPP++ +P P Y++ P QHS PP
Sbjct: 139 SPPPPPPPVF--SPPPPVQYYYSSPPPPQHSPPPPPP 243
>BQ742762 PIR|T06782|T0 extensin - soybean, partial (32%)
Length = 420
Score = 33.1 bits (74), Expect = 0.62
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 17/82 (20%)
Frame = +3
Query: 39 ISAISGLIDQVSFLNGHLRSIPPQP-----PPIYHHNPAP---------YHNYPSQTQHS 84
++ IS + + + ++ S PP P PP Y+H+P P Y++ P +HS
Sbjct: 33 LTIISLTLPSQTLADNYIYSSPPPPKHSPPPPYYYHSPPPPKHSPPPPYYYHSPPPPKHS 212
Query: 85 ---ALSSPPLKLIKFSGSDPTF 103
SPP + K+ P +
Sbjct: 213 PPYKYPSPPPPVYKYKSPPPPY 278
>BE806144
Length = 423
Score = 33.1 bits (74), Expect = 0.62
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +3
Query: 487 LLPLFDWSYATTLVNVPHSSTEVSSKLVSSISHHMFEEIHELI---CVTNYG 535
LLP+F W L VP+ S+ SSIS H F+ ++ L+ C++ +G
Sbjct: 81 LLPMFSWDIVPWLHIVPNLGRSFSN---SSISQHQFQALYSLLSLQCLSQFG 227
>TC214142 similar to PIR|T49142|T49142 CCR4-associated factor 1-like protein
- Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(85%)
Length = 1439
Score = 32.7 bits (73), Expect = 0.81
Identities = 31/114 (27%), Positives = 40/114 (34%)
Frame = +2
Query: 155 FKLQFIQFRSEHIAASSGTVLEKTTVVVPPRKGGTVYHDELETTEDPQQKPQVLSDVKPH 214
F LQ S A SS T+L P ++ D T PQ + +
Sbjct: 587 FGLQISNPNSNSSANSSTTILLSRWTQNSP----VLFSDHTWT---PQNPTTTATTIATA 745
Query: 215 TPTFMALSSPVSTQKVSAGIIHIEHFCPTVFETPPTKKPLDISTHCSQVISTPP 268
TPT A SSP ST S+ + P F P P ST + + P
Sbjct: 746 TPTTTASSSPTSTLSTSSRSASLSPTPPATFPISPETAPSGNSTSVTSTLRVTP 907
>TC224968 similar to UP|Q39835 (Q39835) Extensin, partial (44%)
Length = 681
Score = 32.3 bits (72), Expect = 1.1
Identities = 14/32 (43%), Positives = 17/32 (52%), Gaps = 3/32 (9%)
Frame = +3
Query: 55 HLRSIPPQPP---PIYHHNPAPYHNYPSQTQH 83
+ S PP PP P Y+H+P P H YP H
Sbjct: 462 YYHSPPPPPPKKKPYYYHSPPPPHPYPHPHPH 557
>TC225027 similar to UP|Q39835 (Q39835) Extensin, partial (49%)
Length = 747
Score = 32.3 bits (72), Expect = 1.1
Identities = 14/32 (43%), Positives = 17/32 (52%), Gaps = 3/32 (9%)
Frame = +2
Query: 55 HLRSIPPQPP---PIYHHNPAPYHNYPSQTQH 83
+ S PP PP P Y+H+P P H YP H
Sbjct: 500 YYHSPPPPPPKKKPYYYHSPPPPHPYPHPHPH 595
>TC225016 similar to UP|Q39835 (Q39835) Extensin, partial (32%)
Length = 973
Score = 32.3 bits (72), Expect = 1.1
Identities = 14/32 (43%), Positives = 17/32 (52%), Gaps = 3/32 (9%)
Frame = +2
Query: 55 HLRSIPPQPP---PIYHHNPAPYHNYPSQTQH 83
+ S PP PP P Y+H+P P H YP H
Sbjct: 182 YYHSPPPPPPKKKPYYYHSPPPPHPYPHPHPH 277
>TC224876 weakly similar to UP|Q39835 (Q39835) Extensin, partial (66%)
Length = 1340
Score = 32.3 bits (72), Expect = 1.1
Identities = 14/32 (43%), Positives = 17/32 (52%), Gaps = 3/32 (9%)
Frame = +3
Query: 55 HLRSIPPQPP---PIYHHNPAPYHNYPSQTQH 83
+ S PP PP P Y+H+P P H YP H
Sbjct: 774 YYHSPPPPPPKKKPYYYHSPPPPHPYPHPHPH 869
Score = 29.6 bits (65), Expect = 6.9
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = +1
Query: 60 PPQPPPIYHHNPAPYHNYPSQTQHSALSSPP 90
PP PP Y+H+P P P + + S PP
Sbjct: 205 PPPPPKYYYHSPPPPSPSPPKKPYYYHSPPP 297
>TC224792 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich glycoprotein
(Fragment), partial (86%)
Length = 688
Score = 32.3 bits (72), Expect = 1.1
Identities = 13/31 (41%), Positives = 16/31 (50%)
Frame = +2
Query: 60 PPQPPPIYHHNPAPYHNYPSQTQHSALSSPP 90
P PPP Y+H+P P + Y S S PP
Sbjct: 266 PSPPPPYYYHSPPPPYYYQSPPPPSPTPHPP 358
>TC221928 similar to UP|Q9SN46 (Q9SN46) Extensin-like protein, partial (4%)
Length = 577
Score = 32.0 bits (71), Expect = 1.4
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 58 SIPPQPPPIYHHNPAPYHNYPSQTQHSALSSPP 90
S PP PPP+Y H+P P P +T S PP
Sbjct: 8 SPPPPPPPVY-HSPPPASPPPCETPPSVSPPPP 103
>BQ613012
Length = 415
Score = 32.0 bits (71), Expect = 1.4
Identities = 38/123 (30%), Positives = 52/123 (41%), Gaps = 2/123 (1%)
Frame = +2
Query: 501 NVPHSSTEVSSKLVSSISHHMFEEIHELICVTNYGNSFHSSIANTNTPSVLELHDSLPVI 560
N P S+T+ S L + SHH FE N+ HSS N TP+ EL V
Sbjct: 59 NRPGSNTK*SRTLNWT*SHH-FEVF----------NNVHSSHLNVVTPNKAELLIGHEVF 205
Query: 561 FDPGIINFEHFCLIIFHMSHAY-ATCMCAIGKMLFTQNFVPLSFNASVALSLKIDYSAT- 618
F +I F L++F + + C K + P S +V+ K + SAT
Sbjct: 206 FLQXLIMFTVLILLLF*LVGVFNIICFLISLKTTKKKKKSPWSGKPTVSSPTKTNNSATW 385
Query: 619 CVP 621
CVP
Sbjct: 386 CVP 394
>TC214303 similar to UP|Q9T0K5 (Q9T0K5) Extensin-like protein, partial (18%)
Length = 1014
Score = 31.6 bits (70), Expect = 1.8
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Frame = +2
Query: 60 PPQPPPIYHHNP-------APYHNYPSQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFF 112
PP PPP H+P APYH PS SPP I+++ P T V+
Sbjct: 230 PPPPPPCEEHSPPPPSPHSAPYHPPPS-------PSPPPPPIQYNSPPPPSPPPPTPVYH 388
Query: 113 LQHPWP 118
P P
Sbjct: 389 YNSPPP 406
>TC214150 homologue to UP|Q9ZTV1 (Q9ZTV1) Chaperonin 60 alpha subunit, partial
(98%)
Length = 2134
Score = 31.6 bits (70), Expect = 1.8
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
Frame = +3
Query: 734 CA-SNVLLIDGLTLLTWTLLLAWPHLGCFIFGQPFGFICSKFKFVLAGPTTLSLFLARLE 792
CA N + G+ L T +++ P + G P G F+ T + F+ ++E
Sbjct: 1692 CALQNAASVAGMVLTTQAIVVEKPKPKAPVAGAPQGLTV*---FLGCRATAKNSFVQKIE 1862
Query: 793 DKTYFQRGSIGRRSKDNVSTPNVGEDEKEVETENGKSTADLKVSHGLFPNSKASSTKLYF 852
F+ SIG+++ S VG DE+ K L SHG+F + K S ++F
Sbjct: 1863 SAYVFEFCSIGKKNVFVNSFRFVGLDER-------KEIIILDSSHGMFND*K*GSHLIFF 2021
Query: 853 LIMDC 857
C
Sbjct: 2022 FKF*C 2036
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,039,215
Number of Sequences: 63676
Number of extensions: 997817
Number of successful extensions: 8150
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 6779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7715
length of query: 987
length of database: 12,639,632
effective HSP length: 106
effective length of query: 881
effective length of database: 5,889,976
effective search space: 5189068856
effective search space used: 5189068856
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0181.4