TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0180b.2
         (57 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BU091081 similar to GP|14335016|gb|A At2g39500/F12L6.16 {Arabido...    95  8e-21
TC204110 similar to UP|R101_ARATH (Q9SW09) 40S ribosomal protein...    27  2.2
TC232874 weakly similar to UP|O04020 (O04020) F7G19.3 protein, p...    26  3.7
TC223099 similar to UP|Q8J0A3 (Q8J0A3) Calcineurin temperature s...    25  6.3
TC204175 homologue to UP|TBB2_SOYBN (P12460) Tubulin beta-2 chai...    25  8.2

>BU091081 similar to GP|14335016|gb|A At2g39500/F12L6.16 {Arabidopsis
           thaliana}, partial (67%)
          Length = 371

 Score = 94.7 bits (234), Expect = 8e-21
 Identities = 43/47 (91%), Positives = 45/47 (95%)
 Frame = +2

Query: 1   MELKNVVKDKKFWVASFLIAWAAALQGHMMWLQRQDSFKHKFRNLDD 47
           MEL+NVVKDKKFW+ASFLIAWAAALQGHMMWLQRQDSFKHKF N DD
Sbjct: 89  MELRNVVKDKKFWMASFLIAWAAALQGHMMWLQRQDSFKHKFGNPDD 229


>TC204110 similar to UP|R101_ARATH (Q9SW09) 40S ribosomal protein S10-1,
           partial (93%)
          Length = 837

 Score = 26.9 bits (58), Expect = 2.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 12  FWVASFLIAWAAALQGHMMWLQRQDSFKHKFRNLD 46
           FW  S+  AW   L+    WL   D FKH F N++
Sbjct: 522 FWGWSWRKAW---LRSWFRWLWGTD*FKHSFLNIN 617


>TC232874 weakly similar to UP|O04020 (O04020) F7G19.3 protein, partial (32%)
          Length = 715

 Score = 26.2 bits (56), Expect = 3.7
 Identities = 10/28 (35%), Positives = 16/28 (56%)
 Frame = +1

Query: 15  ASFLIAWAAALQGHMMWLQRQDSFKHKF 42
           +SF+I W   L  H +W+ R   F+ K+
Sbjct: 616 SSFIIRWGEDLSSH*IWILRS*YFEGKY 699


>TC223099 similar to UP|Q8J0A3 (Q8J0A3) Calcineurin temperature suppressor
           Cts1, partial (3%)
          Length = 998

 Score = 25.4 bits (54), Expect = 6.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 5   NVVKDKKFWVASFLIAWAAALQGHMMW 31
           NVVK ++ WV SFLI       G   W
Sbjct: 573 NVVKSRRKWVTSFLIVKGLCPCGGNPW 653


>TC204175 homologue to UP|TBB2_SOYBN (P12460) Tubulin beta-2 chain, complete
          Length = 1653

 Score = 25.0 bits (53), Expect = 8.2
 Identities = 8/15 (53%), Positives = 12/15 (79%)
 Frame = +3

Query: 13  WVASFLIAWAAALQG 27
           W+ SF I+W +A+QG
Sbjct: 876 WICSFDISWLSAIQG 920


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.133    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,012,547
Number of Sequences: 63676
Number of extensions: 30262
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of query: 57
length of database: 12,639,632
effective HSP length: 33
effective length of query: 24
effective length of database: 10,538,324
effective search space: 252919776
effective search space used: 252919776
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)