TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0178.14
         (599 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC213164                                                               68  1e-11
BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase...    60  4e-09
BI321779                                                               48  1e-05
CA851997                                                               37  0.033
TC233646                                                               32  1.0
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript...    29  5.2
BG238116 weakly similar to SP|Q9M7Q7|PCN1_ Proliferating cellula...    28  8.9

>TC213164 
          Length = 446

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 37/112 (33%), Positives = 57/112 (50%)
 Frame = +3

Query: 436 KFEGPDGLNGLFYKNHWDTVHEVFCEAARSFFSTGHLPSKINETVVTLIPKVPNPESITH 495
           K  GPDGLN  F K  WD +          F++ G    + N   + LIPKV +P S+  
Sbjct: 78  KSPGPDGLNFKFIKEFWDILKTDLLRFLDEFYANGVFLKRSNAFFLALIPKVHDP*SLNE 257

Query: 496 YRPISCCNFTYKVISRIIVTRLKGGLNQLITLNQSAFIGVKMIQDNIMIAQE 547
           Y+PIS     YK++++++  R K  L  +I   Q+ F+  +    N++IA E
Sbjct: 258 YKPISLIGCIYKIVAKLLSGRHKKVLPTIIDERQTVFMEGRHTLHNVVIANE 413


>BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase - beet
           retrotransposon (fragment), partial (15%)
          Length = 376

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 27/77 (35%), Positives = 42/77 (54%)
 Frame = -2

Query: 436 KFEGPDGLNGLFYKNHWDTVHEVFCEAARSFFSTGHLPSKINETVVTLIPKVPNPESITH 495
           K  GPDGLN  F K+ W+ +          F + G  P   N + + LIPKV +P+++  
Sbjct: 342 KSPGPDGLNFKFIKHFWERLKPDIIRFLNEFHANGIFPKGGNASFIALIPKVKHPQALND 163

Query: 496 YRPISCCNFTYKVISRI 512
           +RPIS     YK++++I
Sbjct: 162 FRPISLIGCVYKIVAKI 112


>BI321779 
          Length = 421

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 25/74 (33%), Positives = 33/74 (43%)
 Frame = +2

Query: 436 KFEGPDGLNGLFYKNHWDTVHEVFCEAARSFFSTGHLPSKINETVVTLIPKVPNPESITH 495
           K  GPDG + L  K  W+ + E      + F     LP   N + + LI K  NP  I  
Sbjct: 143 KSPGPDGYSLLLIKIFWEVIKEEVINFFKEFHKFDFLPRGTNRSFIALIAKCDNPLDIGQ 322

Query: 496 YRPISCCNFTYKVI 509
           Y PIS     YK++
Sbjct: 323 YCPISLVGCLYKIV 364


>CA851997 
          Length = 636

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 23/86 (26%), Positives = 39/86 (44%), Gaps = 2/86 (2%)
 Frame = +1

Query: 440 PDGLNGLFYKNHWDTVHEVFCEAARSFFSTGHLPSKINETVVTLIPKVPNPESITHYRPI 499
           PDG N  FY   W    E   +A   + + G  PS +N+T + +I ++            
Sbjct: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495

Query: 500 SCCNFTYKV--ISRIIVTRLKGGLNQ 523
             CN  +K+  +S ++  RLK  L++
Sbjct: 496 LLCNGGFKILFLSEVLAKRLKNVLDK 573


>TC233646 
          Length = 978

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 26/66 (39%), Positives = 35/66 (52%), Gaps = 1/66 (1%)
 Frame = -3

Query: 472 LPSKINETVVTLIPKVPNPESITHYRPISCCNFTYKVISRII-VTRLKGGLNQLITLNQS 530
           LPS I+   + LIPK+ N E +  Y  IS CN T +++SR    T  K   +  I  NQ 
Sbjct: 844 LPSIIS---LVLIPKIDNLEILK*Y*SISLCNVTTRLLSRSS*PTSSKSFPS*PIARNQC 674

Query: 531 AFIGVK 536
           +FI  K
Sbjct: 673 SFIPSK 656


>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
           (Fragment) , partial (59%)
          Length = 1077

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 557 RASKEHVALKLDMSKAYERVEWSFL 581
           R++K  +  K+D  KAY+ V W+FL
Sbjct: 46  RSNKSCLVFKVDYEKAYDSVSWNFL 120


>BG238116 weakly similar to SP|Q9M7Q7|PCN1_ Proliferating cellular nuclear
           antigen 1 (PCNA 1). [Mouse-ear cress] {Arabidopsis
           thaliana}, partial (22%)
          Length = 544

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 468 STGHLPSKINETVVTLIPKVPNPESITHYR--PISCCNFTYKVISRII 513
           STG     +N T+  L+P +  PE    YR  PI+    T    +RI+
Sbjct: 92  STGFSLKALNSTLCALVPLLLRPEGFNPYRWNPITSWGLTLNTWARIL 235


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.350    0.155    0.548 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,228,173
Number of Sequences: 63676
Number of extensions: 411811
Number of successful extensions: 3623
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2645
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 945
Number of HSP's gapped (non-prelim): 2790
length of query: 599
length of database: 12,639,632
effective HSP length: 103
effective length of query: 496
effective length of database: 6,081,004
effective search space: 3016177984
effective search space used: 3016177984
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 62 (28.5 bits)