BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0177.6
(1032 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 978 0.0
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 972 0.0
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 228 8e-60
TC232995 225 9e-59
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 215 7e-56
TC213445 120 1e-45
BM143109 171 1e-42
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 169 8e-42
AI959950 167 3e-41
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 156 4e-38
CO983516 152 7e-37
AI855982 146 5e-35
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 140 3e-33
AI966222 113 1e-30
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 127 3e-29
BU549979 124 2e-28
CO982036 123 5e-28
BG508993 119 7e-27
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 117 3e-26
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 114 3e-25
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 978 bits (2529), Expect = 0.0
Identities = 488/1008 (48%), Positives = 671/1008 (66%)
Frame = +1
Query: 9 QSWYLDSGCSRHMTGERRMFRELKLKPGGEVGFGGNEKGKIVGTGTICVDSSPCIDNVLL 68
+ WYLDSGCSRHMTG + ++ V FG KGKI+G G + D P ++ VLL
Sbjct: 1678 EDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLL 1857
Query: 69 VDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQN 128
V GLT NL+SISQL D+G++V F + C ++ ++ S+ K+N Y E +
Sbjct: 1858 VKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSS 2037
Query: 129 VKCLLSVNEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKDKFTKV 188
CL S +E +WH+R GH +R + ++ VRG+PNLK +C CQ K K+
Sbjct: 2038 T-CLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKM 2214
Query: 189 PFKAKNVVSTSRSLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHA 248
+ +TSR LELLH+DL GP++ ES+GGKRY V+VDD+SR+TWV F+ K E+
Sbjct: 2215 SHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFE 2394
Query: 249 VFSTFIAQVQNEKACRIVRVRSDHGGKFENDKFESLFDSYGIAHDFSCPRTPQQNGVVER 308
VF ++Q EK C I R+RSDHG +FEN +F S GI H+FS TPQQNG+VER
Sbjct: 2395 VFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVER 2574
Query: 309 KNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISY 368
KNRTLQE AR ML + + WAEA+NTACYI NR+++R T YE+WK KP++ +
Sbjct: 2575 KNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKH 2754
Query: 369 FHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDK 428
FH FG CY+L +++ K D KS + LGYS S+ +R +N+ +T+ ESI+V DD
Sbjct: 2755 FHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDL 2934
Query: 429 LDSDQSKLVEKFADLSINVSDKGKAPEEVEPEEDEPEEEAGPSNSQTLKKSRITAAHPKE 488
+ + + E NV+D K+ E E D +E+ + +RI HPKE
Sbjct: 2935 SPARKKDVEEDVRTSGDNVADAAKSGENAE-NSDSATDESNINQPDKRSSTRIQKMHPKE 3111
Query: 489 LIMGNKDEPVRTRSAFRPSEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSK 548
LI+G+ + V TRS E ++S VS IEPK++ EAL D+ WI AM+EEL QF +
Sbjct: 3112 LIIGDPNRGVTTRSR----EVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKR 3279
Query: 549 NDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVA 608
N+VW LV +PE +VIGTKW+F+NK NE+G + RNKARLVAQGY+Q EG+D+ ETFAPVA
Sbjct: 3280 NEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVA 3459
Query: 609 RLEAIRLLISFSVNHNIVLHQIDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKS 668
RLE+IRLL+ + L+Q+DVKSAFLNGY++EEVYV QP GF D PDHV++LKK+
Sbjct: 3460 RLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKA 3639
Query: 669 LYGLKQAPRAWYERLSSFLLENEFERGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQS 728
LYGLKQAPRAWYERL+ FL + + +G +D TLF K ++++I QIYVDDI+FG +
Sbjct: 3640 LYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNE 3819
Query: 729 LCKEFYEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAK 788
+ + F + MQ+EFEMS++GEL YFLG+QV Q + ++ QS+Y K ++KKF M ++ +
Sbjct: 3820 MLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKR 3999
Query: 789 TPMHPTCILEKEDKSGKVCQKLYRGTIGSLLYLTASRPDILFSVHLCARF*SDPRETHLT 848
TP L K++ V Q LYR IGSLLYLTASRPDI ++V +CAR+ ++P+ +HLT
Sbjct: 4000 TPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLT 4179
Query: 849 AVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWA 908
VKRIL+Y+ GT++ G+MY S L GYCDAD+AG +RKSTSG C +LG+NL+SW
Sbjct: 4180 QVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWF 4359
Query: 909 SKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPI 968
SK+Q+ ++LSTAEAEYI+A +Q++WMK L++Y + + + +YCDN +AI++SKNP+
Sbjct: 4360 SKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPV 4539
Query: 969 LHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 1016
HSR KHI++++H+IRD V V+ LK VDT+ Q ADIFTK L ++F
Sbjct: 4540 QHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQF 4683
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 973 bits (2514), Expect = 0.0
Identities = 488/1010 (48%), Positives = 671/1010 (66%), Gaps = 2/1010 (0%)
Frame = +1
Query: 9 QSWYLDSGCSRHMTGERRMFRELKLKPGGEVGFGGNEKGKIVGTGTICVDSSPCIDNVLL 68
+ WYLDSGCSRHMTG + ++ V FG KGKI G G + D P ++ VLL
Sbjct: 1681 EDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLL 1860
Query: 69 VDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQN 128
V GLT NL+SISQL D+G++V F + C ++ ++ S+ K+N Y E +
Sbjct: 1861 VKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSS 2040
Query: 129 VKCLLSVNEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKDKFTKV 188
CL S +E +WH+R GH +R + ++ VRG+PNLK +C CQ K K+
Sbjct: 2041 T-CLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKM 2217
Query: 189 PFKAKNVVSTSRSLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHA 248
+ +TSR LELLH+DL GP++ ES+GGKRY V+VDD+SR+TWV F+ K ++
Sbjct: 2218 SHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFE 2397
Query: 249 VFSTFIAQVQNEKACRIVRVRSDHGGKFENDKFESLFDSYGIAHDFSCPRTPQQNGVVER 308
VF ++Q EK C I R+RSDHG +FEN KF S GI H+FS TPQQNG+VER
Sbjct: 2398 VFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVER 2577
Query: 309 KNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISY 368
KNRTLQE AR ML + + WAEA+NTACYI NR+++R T YE+WK KP + +
Sbjct: 2578 KNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKH 2757
Query: 369 FHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDK 428
FH FG CY+L +++ K D KS + LGYS S+ +R +N+ +T+ ESI+V DD
Sbjct: 2758 FHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDL 2937
Query: 429 LDSDQSKLVEKFADLSINVSDKGKAPEEVEPEEDEPEEEAGPSNSQTLKKS--RITAAHP 486
+ + + E NV+D K+ E E + +E P+ +Q K+ RI HP
Sbjct: 2938 TPARKKDVEEDVRTSGDNVADTAKSAENAENSDSATDE---PNINQPDKRPSIRIQKMHP 3108
Query: 487 KELIMGNKDEPVRTRSAFRPSEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQF 546
KELI+G+ + V TRS E ++S VS IEPK++ EAL D+ WI AM+EEL QF
Sbjct: 3109 KELIIGDPNRGVTTRSR----EIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQF 3276
Query: 547 SKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAP 606
+N+VW LV +PE +VIGTKW+F+NK NE+G + RNKARLVAQGY+Q EG+D+ ETFAP
Sbjct: 3277 KRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAP 3456
Query: 607 VARLEAIRLLISFSVNHNIVLHQIDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLK 666
VARLE+IRLL+ + L+Q+DVKSAFLNGY++EE YV QP GF D PDHV++LK
Sbjct: 3457 VARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLK 3636
Query: 667 KSLYGLKQAPRAWYERLSSFLLENEFERGKVDTTLFCKTYKDDILIVQIYVDDIIFGSAN 726
K+LYGLKQAPRAWYERL+ FL + + +G +D TLF K ++++I QIYVDDI+FG +
Sbjct: 3637 KALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMS 3816
Query: 727 QSLCKEFYEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTV 786
+ + F + MQ+EFEMS++GEL YFLG+QV Q + ++ QSKY K ++KKF M ++
Sbjct: 3817 NEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASH 3996
Query: 787 AKTPMHPTCILEKEDKSGKVCQKLYRGTIGSLLYLTASRPDILFSVHLCARF*SDPRETH 846
+TP L K++ V Q LYR IGSLLYLTASRPDI ++V +CAR+ ++P+ +H
Sbjct: 3997 KRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISH 4176
Query: 847 LTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVS 906
L VKRIL+Y+ GT++ G+MY S+ L GYCDAD+AG +RKSTSG C +LG+NL+S
Sbjct: 4177 LNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLIS 4356
Query: 907 WASKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQILESNIPIYCDNTAAISLSKN 966
W SK+Q+ ++LSTAEAEYI+A +Q++WMK L++Y + + + +YCDN +AI++SKN
Sbjct: 4357 WFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKN 4536
Query: 967 PILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 1016
P+ HSR KHI++++H+IRD V V+ L+ VDT+ Q ADIFTK L ++F
Sbjct: 4537 PVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDANQF 4686
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 228 bits (582), Expect = 8e-60
Identities = 108/153 (70%), Positives = 132/153 (85%)
Frame = -3
Query: 537 LAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQE 596
+AM+EELNQF +N+VW LV+KPE+ VIGTKWVFRNKL+E G ++RNKARLVA+GY+Q+E
Sbjct: 461 IAMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEE 282
Query: 597 GIDYTETFAPVARLEAIRLLISFSVNHNIVLHQIDVKSAFLNGYISEEVYVHQPPGFEDE 656
GIDY ET+APVARLE IR+L+++ N L+Q+DVKSAFLNG I EEVYV QPPGFE
Sbjct: 281 GIDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIP 102
Query: 657 KKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLE 689
KP HV+KL+K+LYGLKQAPRAWYER+S+FLLE
Sbjct: 101 DKPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3
>TC232995
Length = 1009
Score = 225 bits (573), Expect = 9e-59
Identities = 111/173 (64%), Positives = 132/173 (76%)
Frame = +2
Query: 647 VHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFERGKVDTTLFCKTY 706
V QPPGFE KP+HV+KL+K+LYGLKQAPRAWYERLS+FLLE EF RGKVDTTLF K
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 707 KDDILIVQIYVDDIIFGSANQSLCKEFYEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYI 766
+DIL+VQIYVDDIIFGS N SLCKEF MQ+EFEMSMMGELKYFLG+Q+ QT G +I
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361
Query: 767 HQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGTIGSLL 819
+QSKY KEL+K+F M + TPM C L+K++ + K YR IG ++
Sbjct: 362 NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 215 bits (548), Expect = 7e-56
Identities = 121/245 (49%), Positives = 159/245 (64%)
Frame = +3
Query: 652 GFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFERGKVDTTLFCKTYKDDIL 711
GFED+++P HVF + L L + F +++ E + K K+ L
Sbjct: 330 GFEDKERPCHVFMV*NKL*ELGMKG*VHF*----FQMDSPEE*RTPHYSERLK--KETFL 491
Query: 712 IVQIYVDDIIFGSANQSLCKEFYEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKY 771
I+ IYVDDIIFG+ ++ +CKEF+E+M+ FE SM GELK+ LG+Q+ Q G +IHQ KY
Sbjct: 492 IIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEKY 671
Query: 772 TKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGTIGSLLYLTASRPDILFS 831
TK LK+F M E+ TPMH + I++K++K K Y G I SL YLT+SRPDI+F
Sbjct: 672 TKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVFV 851
Query: 832 VHLCARF*SDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERK 891
V LCARF S P+ +H+TAVKRILRYL GTTN L +KK SE+ L GYCD +AGD+ ERK
Sbjct: 852 VCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVERK 1031
Query: 892 STSGN 896
STS N
Sbjct: 1032STSRN 1046
>TC213445
Length = 705
Score = 120 bits (302), Expect(2) = 1e-45
Identities = 57/98 (58%), Positives = 76/98 (77%)
Frame = +1
Query: 887 RTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQI 946
+T+R+STS C F+GS LVSW SK+Q+++ LSTAEAEYISA Q+ WM+ L DY +
Sbjct: 400 KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579
Query: 947 LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIR 984
+IPI CDNT+AI+LSKN IL+SR KHIE+++HF+R
Sbjct: 580 KLDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 82.0 bits (201), Expect(2) = 1e-45
Identities = 38/67 (56%), Positives = 49/67 (72%)
Frame = +2
Query: 815 IGSLLYLTASRPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYK 874
I S LYL+ SRP I+FSV +C R+ ++P+E+HL+ +KRI+RYL G NLGL Y K S Y
Sbjct: 200 IESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSYN 379
Query: 875 LSGYCDA 881
L GY DA
Sbjct: 380 LVGYSDA 400
>BM143109
Length = 415
Score = 171 bits (434), Expect = 1e-42
Identities = 85/133 (63%), Positives = 102/133 (75%)
Frame = +1
Query: 649 QPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFERGKVDTTLFCKTYKD 708
QPP ++ +KP+HVFKLKK LYGLKQA RAWYE LS FLL+ F +GKVDT LF +
Sbjct: 4 QPPVRKNSEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLN 183
Query: 709 DILIVQIYVDDIIFGSANQSLCKEFYEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQ 768
DIL+VQIYVDDIIFGS N SLCK+F + MQ EFEMSMM EL +FLG+Q+ QT G +I Q
Sbjct: 184 DILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFISQ 363
Query: 769 SKYTKELLKKFNM 781
SKY K+L+ +F M
Sbjct: 364 SKYCKDLIHRFGM 402
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 169 bits (427), Expect = 8e-42
Identities = 90/217 (41%), Positives = 137/217 (62%), Gaps = 4/217 (1%)
Frame = +1
Query: 811 YRGTIGSLLYLTASRPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGTTNLGLMYK-- 868
+R IGSL YL SRP+I F+V L +RF PR +H+ A KR+LR +KGT G+++
Sbjct: 22 FRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVLFPFK 201
Query: 869 -KTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISA 927
K+ + L GY D+D+ D + KST G V+ +SK+Q IALST EAEY++A
Sbjct: 202 AKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAEYVAA 381
Query: 928 AICSTQMLWMKH*LEDYQILESN-IPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY 986
++ + Q +WM + LE+ ++ E + + DN +AI+L+K+P LH R+KHIE+++H+IRD
Sbjct: 382 SLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHYIRDQ 561
Query: 987 VQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNL 1023
V KG + +++ + Q AD+ TKP+ RF I L
Sbjct: 562 VSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>AI959950
Length = 466
Score = 167 bits (423), Expect(2) = 3e-41
Identities = 85/130 (65%), Positives = 102/130 (78%)
Frame = -1
Query: 538 AMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEG 597
AM+EEL+QF KN+V LVK P+ V+G KW+F NKL+E G VVR KARLVA+GYSQQEG
Sbjct: 391 AMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEG 212
Query: 598 IDYTETFAPVARLEAIRLLISFSVNHNIVLHQIDVKSAFLNGYISEEVYVHQPPGFEDEK 657
IDY +TFA VARLE I +L+SF+ N+ L+Q+DVKSAFLNG I +EVYV QPPGFE+E
Sbjct: 211 IDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENET 32
Query: 658 KPDHVFKLKK 667
HVFKL K
Sbjct: 31 LHQHVFKLNK 2
Score = 21.2 bits (43), Expect(2) = 3e-41
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -2
Query: 517 LVSLIEPKSIDEALQD 532
L+ ++PK IDEA++D
Sbjct: 453 LIFEMKPKHIDEAIKD 406
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 156 bits (395), Expect = 4e-38
Identities = 72/111 (64%), Positives = 95/111 (84%)
Frame = +3
Query: 522 EPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVV 581
EPK+I EA+ D +WI+ M+EELNQF +N+VW LV+KPE+ VIGTKWVFRNKL+E G ++
Sbjct: 3 EPKNIKEAIVDDNWIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIII 182
Query: 582 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQIDV 632
RNKARLVA+GY+Q+EGIDY ET+APVARLEAIR+L++++ N L+Q+DV
Sbjct: 183 RNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMNFKLYQMDV 335
>CO983516
Length = 724
Score = 152 bits (384), Expect = 7e-37
Identities = 72/120 (60%), Positives = 92/120 (76%)
Frame = +2
Query: 604 FAPVARLEAIRLLISFSVNHNIVLHQIDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVF 663
F PVARLE+IRLL+ + L+Q+DVKSAFLNGY++EEVYV QP GF D PDHV+
Sbjct: 365 FHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVY 544
Query: 664 KLKKSLYGLKQAPRAWYERLSSFLLENEFERGKVDTTLFCKTYKDDILIVQIYVDDIIFG 723
+LKK+LYGLKQAPRAWYERL+ L + + +G +D TLF K ++++I QIYVDDI+FG
Sbjct: 545 RLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFG 724
>AI855982
Length = 484
Score = 146 bits (368), Expect = 5e-35
Identities = 77/165 (46%), Positives = 111/165 (66%)
Frame = +2
Query: 486 PKELIMGNKDEPVRTRSAFRPSEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQ 545
P + I+G+ + V TR + + L + VS+IEPK+I EA+ D +WI+AM+EELNQ
Sbjct: 2 PLDNIIGDISKGVTTRHSLKD----LCNNMAFVSMIEPKNIKEAIVDDNWIIAMQEELNQ 169
Query: 546 FSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFA 605
F +N+VW LV+KP++ VI TKWVFRNKL+E ++ +KARLVA+GY+Q +G+DY T+A
Sbjct: 170 FERNNVWKLVEKPDNYPVI*TKWVFRNKLDEHRIIIIHKARLVAEGYNQVDGLDYEHTYA 349
Query: 606 PVARLEAIRLLISFSVNHNIVLHQIDVKSAFLNGYISEEVYVHQP 650
+ARL I + +S+ N L+ SA L+G + EVYV QP
Sbjct: 350 SIARL*VIIMPLSYVYIMNSTLYHYACVSALLHGLLLHEVYVDQP 484
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 140 bits (353), Expect = 3e-33
Identities = 65/151 (43%), Positives = 100/151 (66%), Gaps = 1/151 (0%)
Frame = +2
Query: 874 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 933
+LSGYCDAD+AG +R+STSG C F+G NLVSW SK+Q+ +A S+AEAEY S A+ + +
Sbjct: 14 QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193
Query: 934 MLWMKH*LEDYQILES-NIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 992
++W+K L++ + E + +YCDN AA+ ++ NP+ H R KHIE+ HFIR+ + +
Sbjct: 194 LMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEI 373
Query: 993 LLKFVDTDHQWADIFTKPLAEDRFNFILKNL 1023
+ +F+ ++ Q DI TK L + + L
Sbjct: 374 VTEFIGSNDQPVDILTKSLRGPKIQIVCSKL 466
>AI966222
Length = 430
Score = 113 bits (283), Expect(2) = 1e-30
Identities = 50/88 (56%), Positives = 64/88 (71%)
Frame = +1
Query: 315 EMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYFHPFGC 374
EMART L + KHF AE +N CY+QN+I +RPIL +TPYELWK KPNISYF+PF C
Sbjct: 1 EMARTTLNDNLTPKHF*AEVMNIVCYLQNKIYIRPILKRTPYELWKGRKPNISYFYPFRC 180
Query: 375 VCYVLNTKDRLHKFDAKSSKCLLLGYSE 402
C+++NTKD L K D+KS + + YS+
Sbjct: 181 KCFIINTKDNLGKIDSKSDCGIFIAYSK 264
Score = 39.3 bits (90), Expect(2) = 1e-30
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2
Query: 397 LLGYSERSKGFRFYNTDAKTIEESIHVRF-DDKLDSDQSKLVEKFADLSIN 446
LL + SK FR YN+ IEE+IH+RF +K + + +L E FADL ++
Sbjct: 248 LLHTLKLSKAFRVYNSGTLVIEEAIHIRFGKNKPNKELLELDESFADLRLD 400
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 127 bits (319), Expect = 3e-29
Identities = 61/130 (46%), Positives = 90/130 (68%)
Frame = -2
Query: 555 VKKPESVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIR 614
V P +G +WV+ K+ G+V R KARLVA+GY+Q GIDY +TF+PVA+L +R
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 615 LLISFSVNHNIVLHQIDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQ 674
L ++ + + LHQ+D+K+AFL+G + E++Y+ QPPGF + + V KL +SLYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 675 APRAWYERLS 684
+PRAW+ + S
Sbjct: 46 SPRAWFGKFS 17
>BU549979
Length = 615
Score = 124 bits (311), Expect = 2e-28
Identities = 64/183 (34%), Positives = 111/183 (59%), Gaps = 3/183 (1%)
Frame = -1
Query: 837 RF*SDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGN 896
R+ S+P H K+++RYL+GT + LMYK+T+ ++ GY D+D+AG R+STSG
Sbjct: 606 RYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTSGY 427
Query: 897 CQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQILES---NIPI 953
L +VSW S +Q+ IA ST E E++ ++ +W+K + ++++S + +
Sbjct: 426 IFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPLKL 247
Query: 954 YCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAE 1013
YCDN AA+ ++KN +R+KHI++KY IR+ V++ ++++ V+T+ D TK +
Sbjct: 246 YCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTKGMTP 67
Query: 1014 DRF 1016
F
Sbjct: 66 KNF 58
>CO982036
Length = 674
Score = 123 bits (308), Expect = 5e-28
Identities = 76/212 (35%), Positives = 117/212 (54%), Gaps = 5/212 (2%)
Frame = -2
Query: 706 YKDDILIVQ--IYVDDIIFGSANQSLCKEFYEMMQAEFEMSMMGELKYFLGIQVDQTPEG 763
YK IL V +YVD II GS+ +L + + + F + ++G+L YF+ I+V P+
Sbjct: 673 YKTHILTVYLLVYVDIIITGSSC-TLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDL 497
Query: 764 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGTIGSLLYLTA 823
+ ++ + +K ++ +PM TC L K D YR +G+L Y T
Sbjct: 496 LFSLRTSIFEIFCRKPR*QAQPIS-SPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTV 320
Query: 824 SRPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGTTNLGLMYK---KTSEYKLSGYCD 880
RP+I F+V+ +F S+P ++H T VKRILRYLKG+ + GL K + + G+CD
Sbjct: 319 IRPEISFAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCD 140
Query: 881 ADYAGDRTERKSTSGNCQFLGSNLVSWASKRQ 912
AD+A +++STSG FLG NL+SW +Q
Sbjct: 139 ADWASAVDDKRSTSGAAVFLGPNLISWWXXKQ 44
>BG508993
Length = 374
Score = 119 bits (298), Expect = 7e-27
Identities = 53/123 (43%), Positives = 83/123 (67%), Gaps = 1/123 (0%)
Frame = +1
Query: 858 KGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIAL 917
KGT + GL Y ++ YKL G+CD+D+AGD +RKST+G F+G + +W+SK+Q + L
Sbjct: 4 KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183
Query: 918 STAEAEYISAAICSTQMLWMKH*LEDYQILE-SNIPIYCDNTAAISLSKNPILHSRAKHI 976
T EAEY++A C+ +W++ LE+ Q+L+ + IY DN +A L+KN + H R+KHI
Sbjct: 184 FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHI 363
Query: 977 EVK 979
+ +
Sbjct: 364 DTR 372
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 117 bits (293), Expect = 3e-26
Identities = 55/131 (41%), Positives = 88/131 (66%), Gaps = 1/131 (0%)
Frame = +3
Query: 887 RTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQI 946
R +RKST+G F+G +W SK+Q + LST EAEY++A C +W+++ L++ ++
Sbjct: 6 RDDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKM 185
Query: 947 -LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWAD 1005
E + I DN +A++L+KNP+ H ++KHI+ +YHFIR+ ++K + LK+V + Q AD
Sbjct: 186 PQEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAAD 365
Query: 1006 IFTKPLAEDRF 1016
IFTKPL + F
Sbjct: 366 IFTKPLKLETF 398
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 114 bits (284), Expect = 3e-25
Identities = 56/134 (41%), Positives = 81/134 (59%)
Frame = +3
Query: 517 LVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNE 576
L SL P +I EAL W AM +E+ N W LV P +G +WV+ K+
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 577 KGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQIDVKSAF 636
G V R KARLVA+GY+Q GI+Y +TF+PV L +RL ++ + + LHQ+D+K+AF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 637 LNGYISEEVYVHQP 650
L+G + E++Y+ QP
Sbjct: 363 LHGDLEEDIYMEQP 404
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,185,559
Number of Sequences: 63676
Number of extensions: 626313
Number of successful extensions: 3193
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 3091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3147
length of query: 1032
length of database: 12,639,632
effective HSP length: 107
effective length of query: 925
effective length of database: 5,826,300
effective search space: 5389327500
effective search space used: 5389327500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0177.6