BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0175.2
(314 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227781 similar to GB|AAM47367.1|21360503|AY113059 At5g50917/At... 328 2e-90
TC205597 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {A... 148 4e-36
TC214620 homologue to UP|Q6NKN9 (Q6NKN9) At1g10120, partial (28%) 148 4e-36
TC215736 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {A... 147 8e-36
TC230392 99 1e-33
TC209384 homologue to UP|Q71SQ1 (Q71SQ1) MYC1, partial (41%) 137 8e-33
TC214594 132 2e-31
TC214592 similar to UP|Q71SQ1 (Q71SQ1) MYC1, partial (51%) 132 2e-31
TC214588 homologue to UP|Q71SQ1 (Q71SQ1) MYC1, partial (35%) 127 9e-30
AW307067 126 1e-29
TC205595 108 4e-24
TC205596 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {A... 108 4e-24
TC209383 homologue to UP|Q71SQ1 (Q71SQ1) MYC1, partial (25%) 107 5e-24
TC214555 similar to GB|AAO23602.1|27764962|BT003037 AT3g57800/T1... 106 1e-23
TC214582 homologue to UP|Q6NKN9 (Q6NKN9) At1g10120, partial (20%) 101 4e-22
TC215735 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {A... 100 1e-21
BG352163 70 2e-20
TC214519 similar to UP|Q71SQ1 (Q71SQ1) MYC1, partial (41%) 89 2e-18
TC205173 homologue to UP|Q6K8Y4 (Q6K8Y4) Basic helix-loop-helix ... 89 2e-18
TC205174 homologue to UP|Q6K8Y4 (Q6K8Y4) Basic helix-loop-helix ... 87 1e-17
>TC227781 similar to GB|AAM47367.1|21360503|AY113059 At5g50917/At5g50917
{Arabidopsis thaliana;} , partial (36%)
Length = 1727
Score = 328 bits (841), Expect = 2e-90
Identities = 199/330 (60%), Positives = 233/330 (70%), Gaps = 33/330 (10%)
Frame = +3
Query: 1 MAAFSHHHYHPFLVDSTSRFIKMSSLEDELLQPHINTTTL--------HQETSFSVT--E 50
MAAFS+ YHPFLVD + + L P+ L H+ +SF+VT E
Sbjct: 42 MAAFSYQ-YHPFLVDP-------AFFPNNLNTPNSPPPPLPSQFQQLPHETSSFNVTNQE 197
Query: 51 TSSVDQSSKITISDSELSVEKNQSPETSMVVASME--------------KKRRSRNGSPL 96
TS VDQSSKITISD+E SV KN SP++SMVV +E KKRR+RNGS
Sbjct: 198 TSCVDQSSKITISDNEPSVTKNLSPQSSMVVDKLETGEQVTQKVNIPVDKKRRTRNGSSF 377
Query: 97 SKDPK-------GGSKKQKKGNGGVKEEDMAKEEKKDKKKGPEEPSTGYIHVRARRGQAT 149
+ +P+ G +KKQ+K NGG+KEED AKEEKKD++K PEEP TGYIHVRARRGQAT
Sbjct: 378 TSNPQSKDTATEGKNKKQRKNNGGLKEEDKAKEEKKDQRKCPEEPPTGYIHVRARRGQAT 557
Query: 150 DSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMKLA 209
DSHSLAERVRREKISERM +LQ+LVPGCDKVTGKAL+L+EIINYVQSLQ QVEFLSMKLA
Sbjct: 558 DSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQKQVEFLSMKLA 737
Query: 210 SVNPMLFDMAMDLDNLLVRPEQKVNSLASPPLVLPCVPLCNP--NPGTTFADTSTLNPST 267
SVNPM +D+A DLD LLVRPE K+N++ASP LP + CN N TTFADT+T+ P+
Sbjct: 738 SVNPMFYDLATDLDTLLVRPE-KLNNMASPS-PLPSMSHCNSPNNQATTFADTTTMTPTN 911
Query: 268 SFPTANHDYLLDYPCSDFLQGQQRPNFLCE 297
F T + DYLLD S FLQG QRPN L E
Sbjct: 912 IFHTTS-DYLLDNSVSFFLQG-QRPNVLSE 995
>TC205597 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {Arabidopsis
thaliana;} , partial (30%)
Length = 1417
Score = 148 bits (373), Expect = 4e-36
Identities = 91/191 (47%), Positives = 110/191 (56%), Gaps = 8/191 (4%)
Frame = +3
Query: 71 KNQSPETSMVVASMEKKRRSR------NGSPLSKDPKGGSKKQKKGNGGVKEEDMAKEEK 124
K + P+ S VVA+ + K+ R G + + N E + E
Sbjct: 402 KKRKPQNSKVVAASDNKQDKRVKASGEEGESKVTEQTSNKNGKSNANKNNNRETTSAETS 581
Query: 125 KDKKKGPE--EPSTGYIHVRARRGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTG 182
KD KG E YIHVRARRGQATDSHSLAERVRREKISERM LQ LVPGC+KV G
Sbjct: 582 KDNSKGSEVQNQKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVAG 761
Query: 183 KALVLEEIINYVQSLQHQVEFLSMKLASVNPMLFDMAMDLDNLLVRPEQKVNSLASPPLV 242
KA +L+EIINYVQSLQ QVEFLSMKLA+VNP L +LD L + + + P +
Sbjct: 762 KAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRL---DFNLDELFTKEVFPSCAQSFPNIG 932
Query: 243 LPCVPLCNPNP 253
+P + NP
Sbjct: 933 MPSDMSISNNP 965
>TC214620 homologue to UP|Q6NKN9 (Q6NKN9) At1g10120, partial (28%)
Length = 1137
Score = 148 bits (373), Expect = 4e-36
Identities = 81/130 (62%), Positives = 99/130 (75%), Gaps = 4/130 (3%)
Frame = +1
Query: 97 SKDPKGGSKKQK--KGNGG-VKEEDMAKEEKKDKKKGPEEPSTGYIHVRARRGQATDSHS 153
S PK K+ K + NG V+ + K+ K + + E P +IHVRARRGQAT+SHS
Sbjct: 610 SNGPKEHEKRPKGEQNNGADVRGKQSVKQAKDNNSQSGEAPKENFIHVRARRGQATNSHS 789
Query: 154 LAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMKLASVNP 213
LAERVRREKISERM +LQ+LVPGC+K+TGKA++L+EIINYVQSLQ QVEFLSMKLA+VNP
Sbjct: 790 LAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNP 969
Query: 214 ML-FDMAMDL 222
L FD+ M L
Sbjct: 970 ELNFDVDMIL 999
>TC215736 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {Arabidopsis
thaliana;} , partial (28%)
Length = 1047
Score = 147 bits (370), Expect = 8e-36
Identities = 101/190 (53%), Positives = 112/190 (58%), Gaps = 13/190 (6%)
Frame = +1
Query: 45 SFSVTETSS-----VDQSSKIT---ISDSELSVEKNQSPETSMVVASMEKK-RRSRNGSP 95
S S++ T S VD K T I K P VVA E K +R + G+
Sbjct: 7 SSSISRTFSCPPALVDPEPKPTDSSIGKDSFKKRKTDKPHNPKVVAENENKDKRIKVGAD 186
Query: 96 LSKDPKGGSKKQK----KGNGGVKEEDMAKEEKKDKKKGPEEPSTGYIHVRARRGQATDS 151
G SK K N KE K K E+P YIHVRARRGQATDS
Sbjct: 187 -----DGESKITKCNTINTNTNNKETCTDTSNSKQNSKASEKPD--YIHVRARRGQATDS 345
Query: 152 HSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMKLASV 211
HSLAERVRREKISERMN LQ LVPGC+KVTGKA +L+EIINYVQSLQ QVEFLSMKLA+V
Sbjct: 346 HSLAERVRREKISERMNYLQDLVPGCNKVTGKAGMLDEIINYVQSLQRQVEFLSMKLAAV 525
Query: 212 NPMLFDMAMD 221
NP L D +MD
Sbjct: 526 NPRL-DFSMD 552
>TC230392
Length = 708
Score = 98.6 bits (244), Expect(2) = 1e-33
Identities = 56/83 (67%), Positives = 65/83 (77%), Gaps = 1/83 (1%)
Frame = +3
Query: 158 VRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMKLASVNPMLFD 217
VRREKISERM +LQ LVPGC+KVTGKAL+L+EIINYVQSLQ QVEFLSMKLASVN L
Sbjct: 222 VRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRL-- 395
Query: 218 MAMDLDNLLVRP-EQKVNSLASP 239
+++L+ + Q NSLA P
Sbjct: 396 -DFSIESLISKDIFQSNNSLAHP 461
Score = 62.4 bits (150), Expect(2) = 1e-33
Identities = 31/46 (67%), Positives = 36/46 (77%), Gaps = 1/46 (2%)
Frame = +2
Query: 120 AKEEKKDKKKG-PEEPSTGYIHVRARRGQATDSHSLAERVRREKIS 164
A +EK++K P EP YIHVRARRGQATDSHSLAERVR+E +S
Sbjct: 2 ANDEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRKESLS 139
>TC209384 homologue to UP|Q71SQ1 (Q71SQ1) MYC1, partial (41%)
Length = 1054
Score = 137 bits (344), Expect = 8e-33
Identities = 76/125 (60%), Positives = 87/125 (68%), Gaps = 10/125 (8%)
Frame = +2
Query: 98 KDPKGGSKKQKKG-----NGGVKEEDMAK-----EEKKDKKKGPEEPSTGYIHVRARRGQ 147
++ G +K+ K G N G K E A + + K E P YIHVRARRGQ
Sbjct: 194 QNDSGSNKRMKVGGSSFENDGFKAEAEASSVGGNKSSEQSNKPCEAPKPDYIHVRARRGQ 373
Query: 148 ATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMK 207
ATDSHSLAER RREKISERM +LQ LVPGC+KV GKALVL+EIINY+QSLQ QVEFLSMK
Sbjct: 374 ATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMK 553
Query: 208 LASVN 212
L +VN
Sbjct: 554 LEAVN 568
>TC214594
Length = 1015
Score = 132 bits (332), Expect = 2e-31
Identities = 80/184 (43%), Positives = 110/184 (59%)
Frame = +3
Query: 61 TISDSELSVEKNQSPETSMVVASMEKKRRSRNGSPLSKDPKGGSKKQKKGNGGVKEEDMA 120
T S S L KN+ ET S + + + + + + +K+++ VK
Sbjct: 99 TGSVSNLDRVKNEPQETDSNPCSSSRLGCISDPAVENNNQRTAKRKEREKKLTVKGSSKK 278
Query: 121 KEEKKDKKKGPEEPSTGYIHVRARRGQATDSHSLAERVRREKISERMNMLQQLVPGCDKV 180
+ D+ G E Y+HVR RRGQATDSHSLAER RREKI+ RM +LQ+LVPGC+K+
Sbjct: 279 SKSIADETSGDGE-KLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKI 455
Query: 181 TGKALVLEEIINYVQSLQHQVEFLSMKLASVNPMLFDMAMDLDNLLVRPEQKVNSLASPP 240
+G ALVL++IIN+VQSLQ++VE LSMKLA+VNP++ +LD+LL PP
Sbjct: 456 SGTALVLDKIINHVQSLQNEVEILSMKLAAVNPVI---DFNLDSLLATEGVTPMDCNFPP 626
Query: 241 LVLP 244
V P
Sbjct: 627 TVAP 638
>TC214592 similar to UP|Q71SQ1 (Q71SQ1) MYC1, partial (51%)
Length = 821
Score = 132 bits (332), Expect = 2e-31
Identities = 67/85 (78%), Positives = 72/85 (83%)
Frame = +1
Query: 128 KKGPEEPSTGYIHVRARRGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVL 187
K E P YIHVRARRGQATDSHSLAER RREKISERM +LQ LVPGC+KV GKALVL
Sbjct: 7 KPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVL 186
Query: 188 EEIINYVQSLQHQVEFLSMKLASVN 212
+EIINY+QSLQ QVEFLSMKL +VN
Sbjct: 187 DEIINYIQSLQRQVEFLSMKLEAVN 261
>TC214588 homologue to UP|Q71SQ1 (Q71SQ1) MYC1, partial (35%)
Length = 837
Score = 127 bits (318), Expect = 9e-30
Identities = 70/122 (57%), Positives = 83/122 (67%)
Frame = +3
Query: 94 SPLSKDPKGGSKKQKKGNGGVKEEDMAKEEKKDKKKGPEEPSTGYIHVRARRGQATDSHS 153
+P S+D G K + V + ++ K + P YIHVRARRGQATD+HS
Sbjct: 249 APESQDQNGALKVGEVDATSVAGNKLPQQTPKPSSS-EQAPKQDYIHVRARRGQATDNHS 425
Query: 154 LAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMKLASVNP 213
LAER RREKISERM +LQ LVPGC+KV KA VL+EIINYVQSLQ QVEFLSMKL +V+
Sbjct: 426 LAERARREKISERMKILQDLVPGCNKVIDKAYVLDEIINYVQSLQRQVEFLSMKLEAVSS 605
Query: 214 ML 215
L
Sbjct: 606 RL 611
>AW307067
Length = 430
Score = 126 bits (317), Expect = 1e-29
Identities = 67/100 (67%), Positives = 77/100 (77%), Gaps = 1/100 (1%)
Frame = +1
Query: 102 GGSKKQKKGNGGVKEEDMAKEEKKDKKKG-PEEPSTGYIHVRARRGQATDSHSLAERVRR 160
G K +++ GG A +EK++K P EP YIHVRARRGQATDSHSLAERVRR
Sbjct: 136 GQVKAEEESKGG--NNSNANDEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRR 309
Query: 161 EKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQ 200
EKISERM +LQ LVPGC+KVTGKAL+L+EIINYVQSLQ Q
Sbjct: 310 EKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQ 429
>TC205595
Length = 944
Score = 108 bits (269), Expect = 4e-24
Identities = 63/112 (56%), Positives = 74/112 (65%)
Frame = +2
Query: 142 RARRGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQV 201
R R G HSLAERVRREKISERM LQ LVPGC+KV GKA +L+EIINYVQSLQ QV
Sbjct: 155 RRRLGFTQGKHSLAERVRREKISERMKYLQDLVPGCNKVAGKAGMLDEIINYVQSLQRQV 334
Query: 202 EFLSMKLASVNPMLFDMAMDLDNLLVRPEQKVNSLASPPLVLPCVPLCNPNP 253
EFLSMKLA+VNP L +LD L + + + P + +P + NP
Sbjct: 335 EFLSMKLAAVNPRL---DFNLDELFTKEVFPSCAQSFPNIGMPLDMSMSNNP 481
>TC205596 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {Arabidopsis
thaliana;} , partial (28%)
Length = 1029
Score = 108 bits (269), Expect = 4e-24
Identities = 62/133 (46%), Positives = 79/133 (58%), Gaps = 8/133 (6%)
Frame = +3
Query: 71 KNQSPETSMVVASMEKKRRSRNGSPLSKDPKGGSK--------KQKKGNGGVKEEDMAKE 122
K + P+ S VV + + ++ +G SK K K N + + +
Sbjct: 453 KKRKPQNSKVVVAEIDNNKDKDKRVKVTGEEGESKVTEHHTRNKNAKSNANKNNRETSAD 632
Query: 123 EKKDKKKGPEEPSTGYIHVRARRGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTG 182
K + ++P YIHVRARRGQATDSHSLAERVRREKISERM LQ L+PGC+KV G
Sbjct: 633 TSKGSEVQNQKPD--YIHVRARRGQATDSHSLAERVRREKISERMKYLQDLIPGCNKVAG 806
Query: 183 KALVLEEIINYVQ 195
KA +L+EIINYVQ
Sbjct: 807 KAGMLDEIINYVQ 845
Score = 42.0 bits (97), Expect = 4e-04
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +1
Query: 179 KVTGKALVLEEIINYVQSLQHQVEFLSMKLASVNPML 215
K+ GK L +++ +SLQ QVEFLSMKLA+VNP L
Sbjct: 796 KLQGKLECLMKLLTMFKSLQRQVEFLSMKLAAVNPRL 906
>TC209383 homologue to UP|Q71SQ1 (Q71SQ1) MYC1, partial (25%)
Length = 431
Score = 107 bits (268), Expect = 5e-24
Identities = 53/66 (80%), Positives = 59/66 (89%)
Frame = +3
Query: 150 DSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMKLA 209
DSHSLAER RREKISERM +LQ +VPGC+KV GKALVL+EIINY+QSLQHQVEFLSMKL
Sbjct: 3 DSHSLAERARREKISERMKILQDIVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLE 182
Query: 210 SVNPML 215
+VN L
Sbjct: 183 AVNSRL 200
>TC214555 similar to GB|AAO23602.1|27764962|BT003037 AT3g57800/T10K17_10
{Arabidopsis thaliana;} , partial (22%)
Length = 737
Score = 106 bits (265), Expect = 1e-23
Identities = 61/102 (59%), Positives = 75/102 (72%), Gaps = 4/102 (3%)
Frame = +2
Query: 151 SHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMKLAS 210
SHSLAER RREKI+ RM +LQ+LVPGCDK++G A+VL+EIIN+VQSLQ QVE LSMKLA+
Sbjct: 2 SHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAA 181
Query: 211 VNPMLFDMAMDLDNLLVRPEQKV--NSLAS--PPLVLPCVPL 248
VNP M LD+LL + N+L S PL+ P +PL
Sbjct: 182 VNPR---MDFSLDSLLATDGASLMDNNLPSMVTPLMWPEIPL 298
>TC214582 homologue to UP|Q6NKN9 (Q6NKN9) At1g10120, partial (20%)
Length = 652
Score = 101 bits (252), Expect = 4e-22
Identities = 50/71 (70%), Positives = 63/71 (88%)
Frame = +2
Query: 156 ERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMKLASVNPML 215
+RVRREKISERM +LQ+LVPGC+K+TGKA++L+EIINYVQSLQ QVEFLSMKLA+VNP
Sbjct: 101 KRVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNP-- 274
Query: 216 FDMAMDLDNLL 226
++ D+D +L
Sbjct: 275 -ELNFDVDRIL 304
>TC215735 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {Arabidopsis
thaliana;} , partial (22%)
Length = 691
Score = 99.8 bits (247), Expect = 1e-21
Identities = 52/66 (78%), Positives = 59/66 (88%)
Frame = +1
Query: 156 ERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMKLASVNPML 215
ERVRREKISERM LQ LVPGC+KVTGKA +L+EIINYVQSLQ QVEFLSMKLA+VNP L
Sbjct: 1 ERVRREKISERMKYLQDLVPGCNKVTGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRL 180
Query: 216 FDMAMD 221
D+++D
Sbjct: 181 -DLSID 195
>BG352163
Length = 465
Score = 69.7 bits (169), Expect(2) = 2e-20
Identities = 34/46 (73%), Positives = 39/46 (83%)
Frame = +3
Query: 157 RVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVE 202
+VRREKISERM LQ L+PGC+ V GKA +L+EIINYVQSLQ QVE
Sbjct: 327 QVRREKISERMKYLQDLIPGCNXVAGKAGMLDEIINYVQSLQRQVE 464
Score = 47.0 bits (110), Expect(2) = 2e-20
Identities = 25/35 (71%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Frame = +2
Query: 126 DKKKGPE--EPSTGYIHVRARRGQATDSHSLAERV 158
D KG E YIHVRARRGQATDSHSLAERV
Sbjct: 128 DTSKGSEVQNQKPDYIHVRARRGQATDSHSLAERV 232
>TC214519 similar to UP|Q71SQ1 (Q71SQ1) MYC1, partial (41%)
Length = 741
Score = 89.4 bits (220), Expect = 2e-18
Identities = 44/57 (77%), Positives = 50/57 (87%)
Frame = +3
Query: 159 RREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMKLASVNPML 215
RREKISERM +LQ +VPGC+KV GKALVL+EIINY+QSLQ QVEFLSMKL +VN L
Sbjct: 3 RREKISERMKILQDIVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRL 173
>TC205173 homologue to UP|Q6K8Y4 (Q6K8Y4) Basic helix-loop-helix (BHLH)-like,
partial (29%)
Length = 1490
Score = 89.4 bits (220), Expect = 2e-18
Identities = 60/143 (41%), Positives = 83/143 (57%), Gaps = 10/143 (6%)
Frame = +2
Query: 89 RSRNGSPLSKDPKGGSKKQKKGN------GGVKEEDMAKEEKKDKKKGPEEPSTGYIHVR 142
+S N + + P+G S + N GG + A P +P VR
Sbjct: 314 QSSNQTQHFQHPQGSSNPMQGQNFGAVPAGGGSATNQAPASGAAAGGAPAQPRQ---RVR 484
Query: 143 ARRGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVE 202
ARRGQATD HS+AER+RRE+I+ERM LQ+LVP +K T KA +L+EII+YV+ LQ QV+
Sbjct: 485 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVK 661
Query: 203 FLSMK----LASVNPMLFDMAMD 221
LSM A+V P++ DM+ +
Sbjct: 662 VLSMSRLGGAAAVAPLVADMSSE 730
>TC205174 homologue to UP|Q6K8Y4 (Q6K8Y4) Basic helix-loop-helix (BHLH)-like,
partial (29%)
Length = 845
Score = 86.7 bits (213), Expect = 1e-17
Identities = 49/82 (59%), Positives = 63/82 (76%), Gaps = 4/82 (4%)
Frame = +1
Query: 141 VRARRGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQ 200
VRARRGQATD HS+AER+RRE+I+ERM LQ+LVP +K T KA +L+EII+YV+ LQ Q
Sbjct: 133 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 309
Query: 201 VEFLSMK----LASVNPMLFDM 218
V+ LSM A+V P++ DM
Sbjct: 310 VKVLSMSRLGGAAAVAPLVADM 375
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,923,762
Number of Sequences: 63676
Number of extensions: 172643
Number of successful extensions: 1536
Number of sequences better than 10.0: 197
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of query: 314
length of database: 12,639,632
effective HSP length: 97
effective length of query: 217
effective length of database: 6,463,060
effective search space: 1402484020
effective search space used: 1402484020
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0175.2