TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0174.3
         (919 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC232165                                                               54  4e-12
BE058322                                                               55  1e-07
TC230029 homologue to GB|AAQ56811.1|34098857|BT010368 At1g21690 ...    45  1e-04
TC230028 homologue to GB|AAQ56811.1|34098857|BT010368 At1g21690 ...    41  0.002
TC207334 similar to UP|Q949K3 (Q949K3) Suppressor-like protein, ...    32  1.3
TC212378 similar to UP|O15324 (O15324) HPV16 E1 protein binding ...    30  4.8
CA784694                                                               30  6.3
TC218776 similar to GB|AAM16209.1|20334906|AY094053 AT5g02020/T7...    30  6.3

>TC232165 
          Length = 599

 Score = 53.5 bits (127), Expect(2) = 4e-12
 Identities = 25/46 (54%), Positives = 32/46 (69%)
 Frame = +2

Query: 868 EVDSSKEKGNRCAHLVPSVLESDYQSNCFPQNLWLQKKFRSSYSSK 913
           +VDS KE+G     L PS L+ D QS+CFP+  WL KKF SSY+S+
Sbjct: 95  DVDSLKEEGCNYELLAPSTLDLDNQSDCFPRTRWLHKKFSSSYASQ 232



 Score = 36.6 bits (83), Expect(2) = 4e-12
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = +1

Query: 837 TTLRSCKGNLLSSGERFLNRSFQENMGTSCSEVDSSKEKG 876
           TTLRS +GNLLSS + F+NR  +E    SCS    S+ +G
Sbjct: 1   TTLRSTEGNLLSSRKMFVNRPDRETPRISCSGC*FSQGRG 120


>BE058322 
          Length = 180

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 26/40 (65%), Positives = 32/40 (80%), Gaps = 2/40 (5%)
 Frame = -3

Query: 871 SSKEKGNRCAHLVPSVLESDY--QSNCFPQNLWLQKKFRS 908
           S K++   CAHL PS+L+SD+  QSNCFP+ LWLQKKFRS
Sbjct: 127 SLKKRDTICAHLDPSMLDSDHNHQSNCFPKTLWLQKKFRS 8



 Score = 33.5 bits (75), Expect = 0.44
 Identities = 18/27 (66%), Positives = 20/27 (73%), Gaps = 1/27 (3%)
 Frame = -2

Query: 854 LNRSFQENMGTSCSEVDSSKEKG-NRC 879
           LNRSFQE   TS +EVD SKE+G N C
Sbjct: 179 LNRSFQETNRTSSAEVDLSKEEGYNLC 99


>TC230029 homologue to GB|AAQ56811.1|34098857|BT010368 At1g21690 {Arabidopsis
           thaliana;} , partial (47%)
          Length = 687

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 41/160 (25%), Positives = 70/160 (43%)
 Frame = +1

Query: 289 ISPTLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSAS 348
           ++P L++ +    K+RP    D+  Q+ VVR L   +  G      LF+GP GTGKT+ +
Sbjct: 214 MAPILQSTQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGS-CPHMLFYGPPGTGKTTTA 390

Query: 349 RIFAAALNCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPP 408
              A  L    +   +   L        +    ++K+  +V +  T+Q KS     C P 
Sbjct: 391 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVG-TNQRKS--GYPCPP- 558

Query: 409 ISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMI 448
               FK+ ++DE   +  +   +L   +E  S+   F  I
Sbjct: 559 ----FKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFI 666


>TC230028 homologue to GB|AAQ56811.1|34098857|BT010368 At1g21690 {Arabidopsis
           thaliana;} , partial (24%)
          Length = 435

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 23/67 (34%), Positives = 35/67 (51%)
 Frame = +1

Query: 289 ISPTLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSAS 348
           ++P L++ +    K+RP    D+  Q+ VVR L   +  G      LF+GP GTGKT+ +
Sbjct: 196 MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGS-CPHMLFYGPPGTGKTTTA 372

Query: 349 RIFAAAL 355
              A  L
Sbjct: 373 LAIAHQL 393


>TC207334 similar to UP|Q949K3 (Q949K3) Suppressor-like protein, partial (53%)
          Length = 1828

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
 Frame = +3

Query: 113  HNDDELVYSNPNRQCSSGNKSSSESCDSNHGGEGLDLASIEPHSNNFRDGESCFIATAKS 172
            H+D E+  SN       G+ S  +  DS+      D+A ++  +    DGE  F+ +   
Sbjct: 954  HSDGEVANSN----IEEGSSSDLDFDDSDES----DIAELDEDTE---DGEEIFMRSYSD 1100

Query: 173  SQLGRIDHSRSDKKSLRANQVRPAQVEG--GIVNHVGNPCLSVHDDFSPHSTSVDINQDF 230
            +    +  +   K  +RAN+  P + +G      H+      + +DFSP    VD+N   
Sbjct: 1101 AMNEELKTTTLQKSFVRANEQIPKKDQGTSNASEHI------MDEDFSP--VDVDVNLVK 1256

Query: 231  DVLDNNDNGCGI 242
             +LD+  +  G+
Sbjct: 1257 SLLDSFSSQQGL 1292


>TC212378 similar to UP|O15324 (O15324) HPV16 E1 protein binding protein
           (Thyroid hormone receptor interactor 13) (TRIP13
           protein), partial (36%)
          Length = 1106

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 35/130 (26%), Positives = 54/130 (40%), Gaps = 3/130 (2%)
 Frame = +1

Query: 332 SFYLFHGPRGTGKTSASRIFAAALNC---LSVEGQKPCGLCRECVLFFSGRSKEVKEVDS 388
           S  L  GP GTGKTS  +  A  L+    L     +   +   C+      SK   E   
Sbjct: 229 SIILLQGPPGTGKTSLCKALAQKLSIRFNLRYPQAQLVEVNAHCLF-----SKWFSESGK 393

Query: 389 VRINRTDQVKSLVKNACIPPISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMI 448
           +      +++ +V+        S     +IDE + L A   A+LS +  + S  VV  ++
Sbjct: 394 LVAKLFQKIQEMVEE------ESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALL 555

Query: 449 TPDLDKLPRS 458
           T  +DKL  S
Sbjct: 556 T-QMDKLKSS 582


>CA784694 
          Length = 408

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 867 SEVDSSKEKGNRCAHLVPSVLESDYQSNCFPQ 898
           +++++S    + C H VPS  E+ Y+ N FP+
Sbjct: 319 NKIEASSHLWSGCFHSVPSTFETTYEPNRFPR 224


>TC218776 similar to GB|AAM16209.1|20334906|AY094053 AT5g02020/T7H20_70
           {Arabidopsis thaliana;} , partial (38%)
          Length = 472

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +3

Query: 10  IPISKTLVALRRVRSLRDPSTNSICKRSSLIDNVQWENGSGNGISLLFPEASRECDS 66
           I +++T + + RV  +RD +  +      +I N+  E   G G+S++    ++ C S
Sbjct: 45  IMVARTSIQILRVHRMRDSTLCTGMMEEKMIQNLLQEETGGKGVSIIKITIAKACAS 215


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,180,890
Number of Sequences: 63676
Number of extensions: 613294
Number of successful extensions: 2757
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2753
length of query: 919
length of database: 12,639,632
effective HSP length: 106
effective length of query: 813
effective length of database: 5,889,976
effective search space: 4788550488
effective search space used: 4788550488
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)