BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0173b.2
(347 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC215868 similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, partial (50%) 35 0.050
TC207955 weakly similar to UP|Q94F78 (Q94F78) Nucleosome/chromat... 34 0.11
TC207954 similar to UP|Q9M9V0 (Q9M9V0) F6A14.10 protein, partial... 33 0.15
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 33 0.25
TC221531 similar to UP|Q84N48 (Q84N48) CRS2-associated factor 2,... 33 0.25
TC234699 similar to UP|Q9LVK2 (Q9LVK2) Gb|AAD25600.1, partial (27%) 32 0.42
BE329858 homologue to GP|11124841|emb envelope glycoprotein gp12... 32 0.55
TC232703 similar to UP|Q93ZJ9 (Q93ZJ9) At1g80000/F19K16_3, parti... 31 0.72
TC209338 weakly similar to UP|Q8W586 (Q8W586) AT4g21800/F17L22_2... 31 0.72
TC228249 similar to UP|Q9M9V0 (Q9M9V0) F6A14.10 protein, partial... 31 0.72
TC219510 UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase HD2-P3... 31 0.72
TC235094 similar to UP|PRT3_SCYCA (P30258) Protamine Z3 (Scyllio... 31 0.95
TC231511 weakly similar to UP|SCWB_YEAST (P53189) Probable famil... 30 1.2
TC207721 UP|Q43466 (Q43466) Protein kinase 3 , complete 30 1.2
TC211161 similar to UP|Q8S9A1 (Q8S9A1) Glucosyltransferase-8 (Fr... 30 1.6
TC215449 similar to UP|P93488 (P93488) NAP1Ps, partial (97%) 30 2.1
BQ079492 30 2.1
TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1... 30 2.1
TC219825 weakly similar to UP|MID2_YEAST (P36027) Mating process... 30 2.1
TC215450 similar to UP|P93488 (P93488) NAP1Ps, partial (30%) 30 2.1
>TC215868 similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, partial (50%)
Length = 1472
Score = 35.0 bits (79), Expect = 0.050
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = +1
Query: 136 EKDVEAHDYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDD--------NKDLGSA 187
EK H ED P+ P + S+ +EV +DE +EDE +E+D K+ G +
Sbjct: 298 EKHQNDHVEEQEEDAPNNPEQSQPSDSKEVTDEDEEEEDEEEEEDKPKHAKKAKKNKGRS 477
Query: 188 TTIDPDEIDEIYRDGG 203
T+ + + + R GG
Sbjct: 478 NTLGDEVVKK--RGGG 519
>TC207955 weakly similar to UP|Q94F78 (Q94F78) Nucleosome/chromatin assembly
factor A, partial (26%)
Length = 694
Score = 33.9 bits (76), Expect = 0.11
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 146 VVEDMPSTPVKVYNSEE-EEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDE 197
+ +D+ P+ +N+EE +E E D++ +DE +ED++ D D DE +E
Sbjct: 139 IKDDLWPNPLTYFNNEEPDEEEGDEDEADDEGKEDESGDDDDDQEEDDDEGEE 297
>TC207954 similar to UP|Q9M9V0 (Q9M9V0) F6A14.10 protein, partial (33%)
Length = 742
Score = 33.5 bits (75), Expect = 0.15
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 6/42 (14%)
Frame = +3
Query: 146 VVEDMPSTPVKVYNSEE------EEVEADDEVQEDEAQEDDN 181
+ +D+ P+ +N+EE +E EADDE +EDE+ +DD+
Sbjct: 231 IKDDLWPNPLTYFNNEEPDEEEGDEDEADDEGKEDESDDDDD 356
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 32.7 bits (73), Expect = 0.25
Identities = 23/73 (31%), Positives = 38/73 (51%), Gaps = 2/73 (2%)
Frame = +2
Query: 133 ILVEKDVEAHDY--GVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATTI 190
+LVE+D E ++ VV+D + +EEE + DDE +++ +EDD D G
Sbjct: 272 VLVEEDDEEYESVDEVVDDAED------DEDEEEDDDDDEGDDNDDEEDDAPDGGDDDDD 433
Query: 191 DPDEIDEIYRDGG 203
+ DE + + GG
Sbjct: 434 EDDEEEGDVQRGG 472
Score = 30.0 bits (66), Expect = 1.6
Identities = 13/39 (33%), Positives = 25/39 (63%)
Frame = +2
Query: 159 NSEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDE 197
+S+++ + +DE +EDE ++ + +DLG+ I P E E
Sbjct: 494 DSDDDSDDDEDEDEEDEEEQGEEEDLGTEYLIRPLETAE 610
>TC221531 similar to UP|Q84N48 (Q84N48) CRS2-associated factor 2, partial
(5%)
Length = 922
Score = 32.7 bits (73), Expect = 0.25
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 143 DYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATT 189
DY ED S+ EEEE E +DE ++++ +D++ DL + T
Sbjct: 592 DYAKFEDSYSSDALQTEEEEEEEEDEDEDEDEDYYDDEDDDLYAVDT 732
>TC234699 similar to UP|Q9LVK2 (Q9LVK2) Gb|AAD25600.1, partial (27%)
Length = 777
Score = 32.0 bits (71), Expect = 0.42
Identities = 16/52 (30%), Positives = 31/52 (58%)
Frame = +1
Query: 147 VEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEI 198
VE++ +K Y ++ EVE DD + ++ +E+D+ D+ S + D E+D +
Sbjct: 418 VEELARDLLKNYQ-KKSEVEFDDVMHYEDEEEEDDDDVASCASSDLFELDNL 570
>BE329858 homologue to GP|11124841|emb envelope glycoprotein gp120 {Human
immunodeficiency virus 1}, partial (6%)
Length = 466
Score = 31.6 bits (70), Expect = 0.55
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Frame = +1
Query: 134 LVEKDVEAHDYG---VVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATTI 190
+ E+ ++AH VVED P+ V + + + +E++ E L T+
Sbjct: 127 ITEQKIDAHFSHPEIVVEDQVDKPIPVQDKSDIAEDVTAAAKENQLPEYPESSL---TSD 297
Query: 191 DPDEIDEIYRDGGLEGLRSGGDARIVAVQG------GDGISPEEVAVKNNQPEKKE 240
DP + + + + G+ G++S +G SP+E +KN QPE+ E
Sbjct: 298 DPSK-ESVTQSDGIIGIQSTETVNARMEEGYHHASTSTQTSPDENGMKNIQPEQLE 462
>TC232703 similar to UP|Q93ZJ9 (Q93ZJ9) At1g80000/F19K16_3, partial (10%)
Length = 527
Score = 31.2 bits (69), Expect = 0.72
Identities = 16/54 (29%), Positives = 24/54 (43%)
Frame = +1
Query: 143 DYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEID 196
DY ED+ V EEEEVE +D +E+ ++ + D D+ D
Sbjct: 4 DYDDEEDLEEEEEAVEEEEEEEVEEEDLEEEERSEHEYEGGANGTVVKDSDDAD 165
>TC209338 weakly similar to UP|Q8W586 (Q8W586) AT4g21800/F17L22_260, partial
(28%)
Length = 544
Score = 31.2 bits (69), Expect = 0.72
Identities = 17/48 (35%), Positives = 27/48 (55%), Gaps = 4/48 (8%)
Frame = +3
Query: 159 NSEEEEVEADDEVQEDEAQEDDNKDLGSAT----TIDPDEIDEIYRDG 202
+ E + D+E +++E +DD+ DLG T ID DE +E+ R G
Sbjct: 264 DKEASKSMMDEEDEDEEMDDDDDDDLGIYTEEEDAIDEDEDEEVDRFG 407
>TC228249 similar to UP|Q9M9V0 (Q9M9V0) F6A14.10 protein, partial (82%)
Length = 1066
Score = 31.2 bits (69), Expect = 0.72
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = +3
Query: 146 VVEDMPSTPVKVYNSE--EEEV--EADDEVQEDEAQEDDNKDLGSATTID 191
+ +D+ P+ +N+E EE+V EADDE +++ EDD+++ A + D
Sbjct: 693 IKDDLWPNPLTYFNNELDEEDVDSEADDEENDEDDSEDDDQEENDAGSED 842
>TC219510 UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase HD2-P39, complete
Length = 1196
Score = 31.2 bits (69), Expect = 0.72
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +3
Query: 161 EEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYRDGGLEGLRSGGDARIVAVQG 220
++E+ ++DDE +D A ED++ GS+ +D D E D G D A +G
Sbjct: 531 KDEDDDSDDESDDDLAGEDES---GSSHEMDDDSNSEEESD--------GDDEETPAKKG 677
Query: 221 GDG--ISPEEVAVKNNQPEKK 239
G G P E A K KK
Sbjct: 678 GSGQEXDPMESAAKTPISAKK 740
>TC235094 similar to UP|PRT3_SCYCA (P30258) Protamine Z3 (Scylliorhinine Z3),
partial (76%)
Length = 466
Score = 30.8 bits (68), Expect = 0.95
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -2
Query: 148 EDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKD 183
E +P +P N+EE++ E D+ EDE +E+D+ D
Sbjct: 393 EQLPFSPPNPNNAEEDD-EIDEPEDEDEEEEEDDDD 289
>TC231511 weakly similar to UP|SCWB_YEAST (P53189) Probable family 17
glucosidase SCW11 precursor (Soluble cell wall protein
11) , partial (7%)
Length = 518
Score = 30.4 bits (67), Expect = 1.2
Identities = 17/61 (27%), Positives = 31/61 (49%)
Frame = +2
Query: 152 STPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYRDGGLEGLRSGG 211
S PV +E E E +DEV+++ E+D+ GS + D + + +R+ G + +
Sbjct: 152 SHPVHELQMQESEDEDEDEVEDEYYHEEDD---GSEMSTDDES*SDFFREIGFQVVSFAA 322
Query: 212 D 212
D
Sbjct: 323 D 325
>TC207721 UP|Q43466 (Q43466) Protein kinase 3 , complete
Length = 1416
Score = 30.4 bits (67), Expect = 1.2
Identities = 15/38 (39%), Positives = 24/38 (62%), Gaps = 2/38 (5%)
Frame = +3
Query: 145 GVVEDMP--STPVKVYNSEEEEVEADDEVQEDEAQEDD 180
G D P S PVK + + EE E +++V+E+E +ED+
Sbjct: 1014 GEARDPPPVSRPVKGFGWDGEEDEGEEDVEEEEDEEDE 1127
>TC211161 similar to UP|Q8S9A1 (Q8S9A1) Glucosyltransferase-8 (Fragment),
partial (17%)
Length = 462
Score = 30.0 bits (66), Expect = 1.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 162 EEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEI 195
EE+++ DDE EDE +E+D+ L T P +
Sbjct: 352 EEDLDDDDETPEDEEEEEDDDVLDDDETEPPPSV 251
>TC215449 similar to UP|P93488 (P93488) NAP1Ps, partial (97%)
Length = 1495
Score = 29.6 bits (65), Expect = 2.1
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 139 VEAHDYGVVED-MPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSA 187
++ ++G +ED ++ + EEEE + DD+ ED+ +E K SA
Sbjct: 1016 IQGDEFGDLEDDEDDEDIEEDDDEEEEEDEDDDDDEDDEEESKTKKKSSA 1165
>BQ079492
Length = 426
Score = 29.6 bits (65), Expect = 2.1
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = -3
Query: 145 GVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEI------ 198
G VE++P EEEE E + V E+ +ED+ ++ G + +E+ ++
Sbjct: 388 GEVEEVPG------GGEEEEEEEGEGVAEEGEEEDEEEEEG----VVEEEVGQVVGEARG 239
Query: 199 -YRDGGLEGLRSG 210
+RDGG E G
Sbjct: 238 GFRDGGWEAEGGG 200
>TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(70%)
Length = 2075
Score = 29.6 bits (65), Expect = 2.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 161 EEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEI 198
EEEE E D+E +E+E +E++ D+ + D+I
Sbjct: 182 EEEEEEEDEEEEEEEEEEEEENDVVKQQQQQQQDEDDI 295
Score = 29.3 bits (64), Expect = 2.8
Identities = 13/38 (34%), Positives = 24/38 (62%)
Frame = +2
Query: 146 VVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKD 183
V E++ V+ EEEE E +DE +E+E +E++ ++
Sbjct: 134 VEEEVEEEEVEEEVEEEEEEEEEDEEEEEEEEEEEEEN 247
>TC219825 weakly similar to UP|MID2_YEAST (P36027) Mating process protein
MID2 (Serine-rich protein SMS1) (Protein kinase A
interference protein), partial (19%)
Length = 862
Score = 29.6 bits (65), Expect = 2.1
Identities = 24/69 (34%), Positives = 35/69 (49%), Gaps = 4/69 (5%)
Frame = -2
Query: 159 NSEEEE---VEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYRDGGLEGLRSGGDA-R 214
+SEEEE V D E ED+ +ED+ + DP E +E + +G GG+
Sbjct: 303 DSEEEEEGVVGVDGEDHEDQGEEDEGV-VEDHEEGDP*EGEEEALEDAGDGGEGGGEGDG 127
Query: 215 IVAVQGGDG 223
+ V+GGDG
Sbjct: 126 LGGVEGGDG 100
>TC215450 similar to UP|P93488 (P93488) NAP1Ps, partial (30%)
Length = 672
Score = 29.6 bits (65), Expect = 2.1
Identities = 11/45 (24%), Positives = 28/45 (61%)
Frame = +3
Query: 139 VEAHDYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKD 183
++ ++G +ED + ++E++E DD+ +E+E ++DD+ +
Sbjct: 183 IQGDEFGDLED---------DEDDEDIEEDDDEEEEEDEDDDDDE 290
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,152,636
Number of Sequences: 63676
Number of extensions: 196544
Number of successful extensions: 1614
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of query: 347
length of database: 12,639,632
effective HSP length: 98
effective length of query: 249
effective length of database: 6,399,384
effective search space: 1593446616
effective search space used: 1593446616
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0173b.2