BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0172.11
(148 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203647 homologue to UP|O82529 (O82529) Ribosomal protein L27a,... 274 1e-74
TC203438 homologue to UP|O82529 (O82529) Ribosomal protein L27a,... 274 1e-74
TC203626 homologue to UP|O82529 (O82529) Ribosomal protein L27a,... 272 4e-74
TC203270 homologue to UP|O82529 (O82529) Ribosomal protein L27a,... 272 4e-74
TC203703 homologue to UP|O82529 (O82529) Ribosomal protein L27a,... 270 2e-73
TC203304 similar to UP|O82529 (O82529) Ribosomal protein L27a, p... 268 9e-73
AW459111 similar to GP|3608481|gb|A ribosomal protein L27a {Petu... 172 5e-44
BE440483 similar to GP|3608481|gb| ribosomal protein L27a {Petun... 159 5e-40
BG239019 similar to GP|3608481|gb| ribosomal protein L27a {Petun... 149 4e-37
BF067302 140 2e-34
BE022344 weakly similar to GP|3608481|gb|A ribosomal protein L27... 122 6e-29
TC224179 similar to UP|RL28_NEUCR (P08978) 60S ribosomal protein... 114 2e-26
BE608604 similar to GP|21553702|gb| 60S ribosomal protein L27A {... 97 3e-21
BG315939 similar to GP|7959355|dbj| 60S ribosomal protein L27a {... 89 6e-19
BE801178 weakly similar to GP|3608481|gb|A ribosomal protein L27... 82 7e-17
TC203546 homologue to UP|Q9MAW6 (Q9MAW6) 60S ribosomal protein L... 39 7e-04
AI443106 39 0.001
BF070779 33 0.039
TC225899 similar to UP|O48685 (O48685) Pyruvate dehydrogenase E1... 27 3.6
>TC203647 homologue to UP|O82529 (O82529) Ribosomal protein L27a, partial
(94%)
Length = 796
Score = 274 bits (701), Expect = 1e-74
Identities = 129/148 (87%), Positives = 139/148 (93%)
Frame = +2
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 74 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 253
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FHKLRN+F+CP VNIDKLWSLLPQE KD+A D KAP++DVT +GYFKVLGKGVLP NQ
Sbjct: 254 FHKLRNKFYCPIVNIDKLWSLLPQEAKDKATAD--KAPLLDVTQFGYFKVLGKGVLPQNQ 427
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P+VVKAKL+SKIAEKKIKE GGAV+LTA
Sbjct: 428 PLVVKAKLVSKIAEKKIKEAGGAVVLTA 511
>TC203438 homologue to UP|O82529 (O82529) Ribosomal protein L27a, partial
(96%)
Length = 891
Score = 274 bits (700), Expect = 1e-74
Identities = 128/148 (86%), Positives = 137/148 (92%)
Frame = +3
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 210 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 389
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FHKLRN+F+ P VNIDKLWSL+PQ+ KD+A K AP+IDVT +GYFKVLGKGVLP NQ
Sbjct: 390 FHKLRNKFYSPIVNIDKLWSLIPQDAKDKALKSKDTAPLIDVTQHGYFKVLGKGVLPQNQ 569
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P+VVKAKLISKIAEKKIKE GGAVLLTA
Sbjct: 570 PIVVKAKLISKIAEKKIKEAGGAVLLTA 653
>TC203626 homologue to UP|O82529 (O82529) Ribosomal protein L27a, partial
(94%)
Length = 756
Score = 272 bits (696), Expect = 4e-74
Identities = 129/148 (87%), Positives = 141/148 (95%)
Frame = +1
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 52 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 231
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FHKLRN+F+ P +NIDKLWSL+PQEVKD+A+ + +KAP+IDVT +GYFKVLGKGVLP NQ
Sbjct: 232 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKE-NKAPLIDVTQFGYFKVLGKGVLPQNQ 408
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
PVVVKAKLISKIAEKKIKE GGAV+LTA
Sbjct: 409 PVVVKAKLISKIAEKKIKEAGGAVVLTA 492
>TC203270 homologue to UP|O82529 (O82529) Ribosomal protein L27a, partial
(94%)
Length = 709
Score = 272 bits (696), Expect = 4e-74
Identities = 129/148 (87%), Positives = 141/148 (95%)
Frame = +2
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 71 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 250
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FHKLRN+F+ P +NIDKLWSL+PQEVKD+A+ + +KAP+IDVT +GYFKVLGKGVLP NQ
Sbjct: 251 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKE-NKAPLIDVTQFGYFKVLGKGVLPQNQ 427
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
PVVVKAKLISKIAEKKIKE GGAV+LTA
Sbjct: 428 PVVVKAKLISKIAEKKIKEAGGAVVLTA 511
>TC203703 homologue to UP|O82529 (O82529) Ribosomal protein L27a, partial
(94%)
Length = 1049
Score = 270 bits (689), Expect = 2e-73
Identities = 128/148 (86%), Positives = 138/148 (92%)
Frame = +3
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 351 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 530
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FHKLRN+F+ P +NIDKLWSLLPQE KD+A D KAP++DVT +GYFKVLGKGVLP NQ
Sbjct: 531 FHKLRNKFYNPIINIDKLWSLLPQEAKDKATAD--KAPLLDVTQFGYFKVLGKGVLPQNQ 704
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P+VVKAKLISKIAEKKIKE GGAV+LTA
Sbjct: 705 PLVVKAKLISKIAEKKIKEAGGAVVLTA 788
>TC203304 similar to UP|O82529 (O82529) Ribosomal protein L27a, partial (95%)
Length = 870
Score = 268 bits (684), Expect = 9e-73
Identities = 124/148 (83%), Positives = 136/148 (91%)
Frame = +2
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
+TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 17 LTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 196
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FHKLRN+F+ P VN++KLWSL+PQ+ K++A K AP+IDVT +GYFKVLGKGVLP NQ
Sbjct: 197 FHKLRNKFYSPIVNVEKLWSLIPQDAKEKALKSKDTAPLIDVTQHGYFKVLGKGVLPQNQ 376
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P VVKAKLISKIAEKKIKE GGAVLLTA
Sbjct: 377 PFVVKAKLISKIAEKKIKEAGGAVLLTA 460
>AW459111 similar to GP|3608481|gb|A ribosomal protein L27a {Petunia x
hybrida}, partial (58%)
Length = 337
Score = 172 bits (436), Expect = 5e-44
Identities = 77/110 (70%), Positives = 90/110 (81%)
Frame = +1
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
+TTRFKKNRKKRGHVSAGH RIGKH KHP GRGNA GMHHH+ILFDKYHP +F KV ++Y
Sbjct: 7 VTTRFKKNRKKRGHVSAGHSRIGKHHKHPSGRGNASGMHHHKILFDKYHPEFFEKVXIKY 186
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKV 110
FHKL N+F+ P VNIDKL SL+PQ+ KD+A K P+I+VT + YFKV
Sbjct: 187 FHKLHNKFYSPIVNIDKL*SLIPQDTKDKALKSKDTTPLINVTQHKYFKV 336
>BE440483 similar to GP|3608481|gb| ribosomal protein L27a {Petunia x
hybrida}, partial (68%)
Length = 436
Score = 159 bits (402), Expect = 5e-40
Identities = 88/147 (59%), Positives = 102/147 (68%), Gaps = 2/147 (1%)
Frame = +2
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61
TTRFKKNRKKRGHVS G G I KHRKHP GR NAGGMHHHRILF KYHPG+FGKV MRYF
Sbjct: 2 TTRFKKNRKKRGHVSVGPG*IRKHRKHPVGRANAGGMHHHRILFHKYHPGFFGKVRMRYF 181
Query: 62 HKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQP 121
HKLRN+F+ P +NI KLWSL+P +V D+A N+ + AP+I GKG A +P
Sbjct: 182 HKLRNKFYSPILNIGKLWSLVP*DVMDKAFNE-NNAPLI*RHAVRVL*CSGKGRF-AVEP 355
Query: 122 V--VVKAKLISKIAEKKIKENGGAVLL 146
V + L AE I + GGAV+L
Sbjct: 356 VRSGLCQSLFPISAEMNINDAGGAVVL 436
>BG239019 similar to GP|3608481|gb| ribosomal protein L27a {Petunia x
hybrida}, partial (78%)
Length = 436
Score = 149 bits (377), Expect = 4e-37
Identities = 83/145 (57%), Positives = 98/145 (67%)
Frame = +2
Query: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
TRF KN KRGHVSAG +HHH+ILF YH F V MR+F
Sbjct: 2 TRFYKNMNKRGHVSAGRAESENS*SSLYDAIMLEALHHHQILFKGYHA*TF*NVLMRFFL 181
Query: 63 KLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQPV 122
KLRN+F+ VNIDKLWSL+P EVKD+A+ + +KAP+I VT +GYFKVLGKGVLP NQPV
Sbjct: 182 KLRNRFYSAIVNIDKLWSLVPHEVKDKASKE-NKAPLIGVTQFGYFKVLGKGVLPENQPV 358
Query: 123 VVKAKLISKIAEKKIKENGGAVLLT 147
V KA LI ++AEKKI E G A +LT
Sbjct: 359 VGKA*LILQMAEKKINEAGRAFVLT 433
>BF067302
Length = 433
Score = 140 bits (354), Expect = 2e-34
Identities = 80/145 (55%), Positives = 97/145 (66%)
Frame = +2
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61
TT KN KKRGHVSAGHGRIGKHRKH GGR NA MHHH IL +P +FG V MRY
Sbjct: 2 TTCLMKNTKKRGHVSAGHGRIGKHRKHLGGRRNA*CMHHHLILVYMNNPWFFGGVRMRYS 181
Query: 62 HKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQP 121
H LR F+ +NI KLW L +VKD A+N+ +KAPVI VT +FK +GKGV+ N
Sbjct: 182 HMLRLTFYSMMLNICKLWILFTLDVKDDASNE-NKAPVICVTQILFFKGVGKGVMT*N*F 358
Query: 122 VVVKAKLISKIAEKKIKENGGAVLL 146
V V A ++ I +K I + GGAV++
Sbjct: 359 VGVIA*RMTTIGDKMINDVGGAVVV 433
>BE022344 weakly similar to GP|3608481|gb|A ribosomal protein L27a {Petunia
x hybrida}, partial (58%)
Length = 262
Score = 122 bits (306), Expect = 6e-29
Identities = 57/87 (65%), Positives = 67/87 (76%)
Frame = +2
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61
TTRF NR KRGHV+AGHGRIGKH+ HPGGR NAGGM H R+LF+K+ PG FGKV MR F
Sbjct: 2 TTRFTMNRNKRGHVTAGHGRIGKHQMHPGGRCNAGGMLHRRMLFNKFRPGLFGKVRMRCF 181
Query: 62 HKLRNQFFCPTVNIDKLWSLLPQEVKD 88
KL ++F+ P + I KLW L+ QEV D
Sbjct: 182RKLLSRFYSPVLIIYKLWFLVSQEVMD 262
>TC224179 similar to UP|RL28_NEUCR (P08978) 60S ribosomal protein L28 (L27A)
(L29) (CRP1), partial (71%)
Length = 647
Score = 114 bits (284), Expect = 2e-26
Identities = 57/105 (54%), Positives = 74/105 (70%), Gaps = 2/105 (1%)
Frame = +3
Query: 46 DKYHPGYFGKVGMRYFHKLRNQFFCPTVNIDKLWSLLPQEVKDQAAND--KSKAPVIDVT 103
DKYHPGYFGKVGMR FH LRN + P +N+DKLWSL+P +V+++ + AP+ID+
Sbjct: 9 DKYHPGYFGKVGMRRFHLLRNHQWKPEINVDKLWSLVPADVREKTLKNAASDSAPLIDLN 188
Query: 104 NYGYFKVLGKGVLPANQPVVVKAKLISKIAEKKIKENGGAVLLTA 148
GY K+LGKG LP P+VV+A+ +S AEKKI + GG V L A
Sbjct: 189 ALGYAKLLGKGRLP-EAPIVVRARYVSAEAEKKITDAGGVVELVA 320
>BE608604 similar to GP|21553702|gb| 60S ribosomal protein L27A
{Arabidopsis thaliana}, partial (39%)
Length = 181
Score = 97.1 bits (240), Expect = 3e-21
Identities = 45/60 (75%), Positives = 49/60 (81%)
Frame = +2
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61
T FKKNRKKRGH SAGHGRIGK+R GRG+AGGMHHHRIL +YH G+FGKVGM YF
Sbjct: 2 TIMFKKNRKKRGHFSAGHGRIGKYRTLS*GRGDAGGMHHHRILLLQYHLGFFGKVGMCYF 181
>BG315939 similar to GP|7959355|dbj| 60S ribosomal protein L27a {Panax
ginseng}, partial (34%)
Length = 163
Score = 89.4 bits (220), Expect = 6e-19
Identities = 40/54 (74%), Positives = 44/54 (81%)
Frame = +2
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGK 55
TTRFK KKRGHVSAGHGRI HRKHP GRG+AGGMHHH IL +YHPG+ G+
Sbjct: 2 TTRFKMTGKKRGHVSAGHGRI*XHRKHPRGRGDAGGMHHHCILCYEYHPGFSGR 163
>BE801178 weakly similar to GP|3608481|gb|A ribosomal protein L27a {Petunia
x hybrida}, partial (52%)
Length = 235
Score = 82.4 bits (202), Expect = 7e-17
Identities = 42/78 (53%), Positives = 47/78 (59%)
Frame = +2
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61
TT F KN G V AGHGR GK R HP AGG+H R LF KYHPG F K +RYF
Sbjct: 2 TTTFMKNWINIGLVYAGHGRFGKLRMHPFSHRYAGGLHDLRFLFYKYHPGLFMKAVLRYF 181
Query: 62 HKLRNQFFCPTVNIDKLW 79
KL +F+C +N KLW
Sbjct: 182LKLLCRFYCSMINRVKLW 235
>TC203546 homologue to UP|Q9MAW6 (Q9MAW6) 60S ribosomal protein L27a, partial
(14%)
Length = 737
Score = 39.3 bits (90), Expect = 7e-04
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1
Query: 72 TVNIDKLWSLLPQEVKDQAAND 93
+VNIDKLWSLLPQE KD+A D
Sbjct: 670 SVNIDKLWSLLPQEAKDKATAD 735
>AI443106
Length = 160
Score = 38.9 bits (89), Expect = 0.001
Identities = 21/44 (47%), Positives = 23/44 (51%)
Frame = +1
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILF 45
TTR KNR GH H + +H KHP NA MH H ILF
Sbjct: 28 TTRSHKNRTWTGHERPDHR*MTQHWKHPARPRNAVCMHQHWILF 159
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/52 (26%), Positives = 26/52 (49%)
Frame = +2
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYF 53
+ R +K+R++R H+ GHGR+ K +H +L+ + G+F
Sbjct: 2 SARLEKSRRQRAHIRTGHGRVTKDLTTVE*HSTGSTLHDPVMLYACTNTGFF 157
>BF070779
Length = 382
Score = 33.5 bits (75), Expect = 0.039
Identities = 20/55 (36%), Positives = 26/55 (46%), Gaps = 1/55 (1%)
Frame = +1
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGG-RGNAGGMHHHRILFDKYHPGYFGK 55
T R +N +G V AGH +GKHR H GG+ RIL + G G+
Sbjct: 25 TIR*TRNAMNKGPVIAGHALLGKHRTHHWTISAMRGGIRKRRILLHETRVGARGR 189
>TC225899 similar to UP|O48685 (O48685) Pyruvate dehydrogenase E1 alpha
subunit , partial (40%)
Length = 700
Score = 26.9 bits (58), Expect = 3.6
Identities = 11/23 (47%), Positives = 15/23 (64%)
Frame = +2
Query: 21 RIGKHRKHPGGRGNAGGMHHHRI 43
R G R+ GGR +A G+ HHR+
Sbjct: 440 RSGGCRRRHGGRHHAQGLRHHRL 508
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.140 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,453,312
Number of Sequences: 63676
Number of extensions: 117218
Number of successful extensions: 588
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of query: 148
length of database: 12,639,632
effective HSP length: 88
effective length of query: 60
effective length of database: 7,036,144
effective search space: 422168640
effective search space used: 422168640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0172.11