TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0171.6
         (799 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co...   262  5e-70
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete             261  1e-69
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara...   178  7e-45
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi...   153  3e-37
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V...   145  7e-35
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ...   132  8e-31
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti...   125  6e-29
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag...   116  4e-26
BM307983                                                              111  1e-24
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ...   103  2e-22
BU764568                                                              102  9e-22
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr...   101  1e-21
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl...    97  3e-20
CO983516                                                               95  1e-19
TC232995                                                               93  4e-19
BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa ...    69  4e-19
BU548243                                                               90  3e-18
AI959950                                                               87  3e-17
AW759031 weakly similar to GP|22093573|db polyprotein {Oryza sat...    70  5e-16
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)        82  7e-16

>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
          Length = 4734

 Score =  262 bits (669), Expect = 5e-70
 Identities = 163/472 (34%), Positives = 246/472 (51%), Gaps = 14/472 (2%)
 Frame = +1

Query: 340  EPHTYAEASKHKCWVDAMNLEISALEANGTWSLVPLPPNVVPIDNKWVYKIKRRANGTVE 399
            EP    EA   + W++AM  E+   + N  W LVP P     I  KW++K K    G + 
Sbjct: 3202 EPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVIT 3381

Query: 400  RYKARLVA*GYNQIEGIYYFDTFSPTAKLTIVRMVLALASVNNWHLHQLDVNNAFLLGDL 459
            R KARLVA GY QIEG+ + +TF+P A+L  +R++L +A +  + L+Q+DV +AFL G L
Sbjct: 3382 RNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYL 3561

Query: 460  YEDVYMKVPEG-VSCVDSGKVCKLHKSSYGLKQASRQWYAKFTSLLVTCGYKQAHSDHSL 518
             E+ Y++ P+G V       V +L K+ YGLKQA R WY + T  L   GY++   D +L
Sbjct: 3562 NEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTL 3741

Query: 519  FSKTQGQSFTILLIYVDDIILAGNFLDEFTRIKAALDNAFKIKDLGVLKYFLGLEVSHSA 578
            F K   ++  I  IYVDDI+  G   +        + + F++  +G L YFLGL+V    
Sbjct: 3742 FVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQME 3921

Query: 579  KGISLCQRKYCLDLVHDSGVLGSKPVSTPLDPSSRLSQDGGGATL*GCFFIQKTHRKTVL 638
              I L Q KY  ++V   G+  +    TP     +LS+D  G ++      Q  +R  + 
Sbjct: 3922 DSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSV-----DQSLYRSMIG 4086

Query: 639  SYYNQV*YNLCSSAAKSVPLQSYCDSLCCS-S*NSKVSERESKKRVI--------FPKEF 689
            S        L  +A++  P  +Y   +C     N K+S     KR++        +   +
Sbjct: 4087 SL-------LYLTASR--PDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMY 4239

Query: 690  C----STIVGV**CRLGGCVDTRRSVTSYCFFIGNSLICWRSKKQQTISKSSSEAVYRAL 745
            C    S +VG       G  D R+S +  CF++G +LI W SKKQ  +S S++EA Y A 
Sbjct: 4240 CHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAA 4419

Query: 746  ASATCEL*RLTYLLKDLQIEPVKPSVIYCDNQSALHIAANPVFHERTKHLEI 797
             S+  +L  +  +LK+  +E      +YCDN SA++I+ NPV H RTKH++I
Sbjct: 4420 GSSCSQLVWMKQMLKEYNVEQ-DVMTLYCDNMSAINISKNPVQHSRTKHIDI 4572


>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
          Length = 4731

 Score =  261 bits (666), Expect = 1e-69
 Identities = 162/472 (34%), Positives = 246/472 (51%), Gaps = 14/472 (2%)
 Frame = +1

Query: 340  EPHTYAEASKHKCWVDAMNLEISALEANGTWSLVPLPPNVVPIDNKWVYKIKRRANGTVE 399
            EP    EA   + W++AM  E+   + N  W LVP P     I  KW++K K    G + 
Sbjct: 3199 EPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVIT 3378

Query: 400  RYKARLVA*GYNQIEGIYYFDTFSPTAKLTIVRMVLALASVNNWHLHQLDVNNAFLLGDL 459
            R KARLVA GY QIEG+ + +TF+P A+L  +R++L +A +  + L+Q+DV +AFL G L
Sbjct: 3379 RNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYL 3558

Query: 460  YEDVYMKVPEG-VSCVDSGKVCKLHKSSYGLKQASRQWYAKFTSLLVTCGYKQAHSDHSL 518
             E+VY++ P+G         V +L K+ YGLKQA R WY + T  L   GY++   D +L
Sbjct: 3559 NEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTL 3738

Query: 519  FSKTQGQSFTILLIYVDDIILAGNFLDEFTRIKAALDNAFKIKDLGVLKYFLGLEVSHSA 578
            F K   ++  I  IYVDDI+  G   +        + + F++  +G L YFLGL+V    
Sbjct: 3739 FVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQME 3918

Query: 579  KGISLCQRKYCLDLVHDSGVLGSKPVSTPLDPSSRLSQDGGGATL*GCFFIQKTHRKTVL 638
              I L Q +Y  ++V   G+  +    TP     +LS+D  G ++      Q  +R  + 
Sbjct: 3919 DSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSV-----DQSLYRSMIG 4083

Query: 639  SYYNQV*YNLCSSAAKSVPLQSYCDSLCCS-S*NSKVSERESKKRVI--------FPKEF 689
            S        L  +A++  P  +Y   +C     N K+S     KR++        +   +
Sbjct: 4084 SL-------LYLTASR--PDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMY 4236

Query: 690  C----STIVGV**CRLGGCVDTRRSVTSYCFFIGNSLICWRSKKQQTISKSSSEAVYRAL 745
            C      +VG       G  D R+S +  CF++GN+LI W SKKQ  +S S++EA Y A 
Sbjct: 4237 CHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAA 4416

Query: 746  ASATCEL*RLTYLLKDLQIEPVKPSVIYCDNQSALHIAANPVFHERTKHLEI 797
             S+  +L  +  +LK+  +E      +YCDN SA++I+ NPV H RTKH++I
Sbjct: 4417 GSSCSQLVWMKQMLKEYNVEQ-DVMTLYCDNMSAINISKNPVQHSRTKHIDI 4569


>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
           thaliana}, partial (18%)
          Length = 421

 Score =  178 bits (452), Expect = 7e-45
 Identities = 90/136 (66%), Positives = 108/136 (79%)
 Frame = -2

Query: 484 KSSYGLKQASRQWYAKFTSLLVTCGYKQAHSDHSLFSKTQGQSFTILLIYVDDIILAGNF 543
           KS YGLKQASR+WY K T+LL+  GY Q+ SD+SLF+ T+G +FT LL+YVDDIILAG+ 
Sbjct: 420 KSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTLTKGNTFTALLVYVDDIILAGDS 241

Query: 544 LDEFTRIKAALDNAFKIKDLGVLKYFLGLEVSHSAKGISLCQRKYCLDLVHDSGVLGSKP 603
           +DEF RIK  LD AFKIK+LG LKYFLGLEV+HS  GI++ QRKYCLDL+ DSG+LG KP
Sbjct: 240 IDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCKP 61

Query: 604 VSTPLDPSSRLSQDGG 619
            STPLD S +L    G
Sbjct: 60  ASTPLDTSIKLHSAAG 13


>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
           partial (34%)
          Length = 407

 Score =  153 bits (387), Expect = 3e-37
 Identities = 75/133 (56%), Positives = 96/133 (71%), Gaps = 1/133 (0%)
 Frame = -2

Query: 373 VPLPPNVVPIDNKWVYKIKRRANGTVERYKARLVA*GYNQIEGIYYFDTFSPTAKLTIVR 432
           VPLPP   P+  +WVY +K    G V+R KARLVA GY Q+ GI Y DTFSP AKLT VR
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227

Query: 433 MVLALASVNNWHLHQLDVNNAFLLGDLYEDVYMKVPEG-VSCVDSGKVCKLHKSSYGLKQ 491
           + LA+A++ +W LHQLD+ NAFL GDL ED+YM+ P G V+  + G VCKLH+S YGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47

Query: 492 ASRQWYAKFTSLL 504
           + R W+ KF+ ++
Sbjct: 46  SPRAWFGKFSHVV 8


>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
           vinifera}, partial (34%)
          Length = 409

 Score =  145 bits (366), Expect = 7e-35
 Identities = 74/134 (55%), Positives = 89/134 (66%)
 Frame = +3

Query: 335 LSLDSEPHTYAEASKHKCWVDAMNLEISALEANGTWSLVPLPPNVVPIDNKWVYKIKRRA 394
           LS  + P T  EA  H  W  AM  E+ ALE NGTW LVPLPP    +  +WVY +K   
Sbjct: 3   LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182

Query: 395 NGTVERYKARLVA*GYNQIEGIYYFDTFSPTAKLTIVRMVLALASVNNWHLHQLDVNNAF 454
           NG V+R KARLVA GY Q+ GI Y DTFSP   LT VR+ LA+A++ +W LHQLD+ NAF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362

Query: 455 LLGDLYEDVYMKVP 468
           L GDL ED+YM+ P
Sbjct: 363 LHGDLEEDIYMEQP 404


>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
           (japonica cultivar-group)}, partial (10%)
          Length = 463

 Score =  132 bits (331), Expect = 8e-31
 Identities = 69/151 (45%), Positives = 96/151 (62%), Gaps = 1/151 (0%)
 Frame = -3

Query: 356 AMNLEISALEANGTWSLVPLPPNVVPIDNKWVYKIKRRANGTVERYKARLVA*GYNQIEG 415
           AM  E++  E N  W LV  P N   I  KWV++ K   +G + R KARLVA GYNQ EG
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279

Query: 416 IYYFDTFSPTAKLTIVRMVLALASVNNWHLHQLDVNNAFLLGDLYEDVYMKVPEGVSCVD 475
           I Y +T++P A+L ++RM+LA  S+ N+ L+Q+DV +AFL G + E+VY++ P G    D
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99

Query: 476 S-GKVCKLHKSSYGLKQASRQWYAKFTSLLV 505
               V KL K+ YGLKQA R WY + ++ L+
Sbjct: 98  KPTHVYKLQKALYGLKQAPRAWYERISNFLL 6


>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
          Length = 558

 Score =  125 bits (315), Expect = 6e-29
 Identities = 76/180 (42%), Positives = 103/180 (57%), Gaps = 2/180 (1%)
 Frame = +1

Query: 395 NGTVERYKARLVA*GYNQIEGIYYFDTFSPTAKLTIVRMVLALASVNNWHLHQLDVNNAF 454
           +GT++++KARLVA  Y Q+ G  Y  TFSP AK+  V ++ ++A V +W L  LD  NAF
Sbjct: 25  SGTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAF 204

Query: 455 LLGDLYEDVYMKVPEG--VSCVDSGKVCKLHKSSYGLKQASRQWYAKFTSLLVTCGYKQA 512
           L G L E+VYM+ P G       S  VC+L +S YGLKQ+ R W   F        Y   
Sbjct: 205 LHGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAW--PFLYCGAAIWYDSH 378

Query: 513 HSDHSLFSKTQGQSFTILLIYVDDIILAGNFLDEFTRIKAALDNAFKIKDLGVLKYFLGL 572
            +DHS+F     Q    L++YVDDI + G+     T +K  L   F+ KDLG L+YFLG+
Sbjct: 379 EADHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558


>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment),
           partial (30%)
          Length = 687

 Score =  116 bits (290), Expect = 4e-26
 Identities = 52/97 (53%), Positives = 71/97 (72%)
 Frame = +2

Query: 703 GCVDTRRSVTSYCFFIGNSLICWRSKKQQTISKSSSEAVYRALASATCEL*RLTYLLKDL 762
           GC   RRS + YC FIG +L+ W+SKKQ  +++SS+EA YR++A  TCEL  +   L++L
Sbjct: 47  GCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCELMWIKQFLQEL 226

Query: 763 QIEPVKPSVIYCDNQSALHIAANPVFHERTKHLEIEC 799
           +        +YCDNQ+ALHIA+NPVFHERTKH+EI+C
Sbjct: 227 RFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDC 337


>BM307983 
          Length = 406

 Score =  111 bits (277), Expect = 1e-24
 Identities = 58/130 (44%), Positives = 82/130 (62%), Gaps = 2/130 (1%)
 Frame = +2

Query: 385 KWVYKIKRRANGTVERYKARLVA*GYNQIEGIYYFDTFSPTAK-LTIVRMVLALASVNNW 443
           +W+Y +K  A+ T++RYKARLVA GY Q  GI Y +TF+   K +          +   W
Sbjct: 11  RWIYTVKY*ADDTLDRYKARLVAKGYIQTYGIDYEETFAQWQK*IQSGSSSP*QQAQFGW 190

Query: 444 HLHQLDVNNAFLLGDLYEDVYMKVPEGVSCVDSG-KVCKLHKSSYGLKQASRQWYAKFTS 502
            +HQ DV NAFL G L E+VYM++P G    + G KVC+L K+ YGLKQ+ R W+ +FT 
Sbjct: 191 EMHQFDVKNAFLHGSLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPRAWFGRFTQ 370

Query: 503 LLVTCGYKQA 512
            +++ GYKQ+
Sbjct: 371 AMLSLGYKQS 400


>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial
           (16%)
          Length = 662

 Score =  103 bits (258), Expect = 2e-22
 Identities = 62/138 (44%), Positives = 87/138 (62%), Gaps = 3/138 (2%)
 Frame = +3

Query: 665 LCCSS*NSKVSERESKKRVIFPKEFCSTIVGV**CRLGGCVDTRRSVTSYCFFIGNSLIC 724
           LC ++   K  +   +K + F +E    I+G        C+D+ +S+T YCFF+G+SLI 
Sbjct: 12  LCAATRVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSSLIS 191

Query: 725 WRSKKQQTISK--SSSEAVYRALASATCEL*RLTYLLKDLQIEPVKPSVIYCDNQSALH- 781
           W++KKQ T+S+  SSSEA YRAL S TCEL  LTYLLKDL +     ++IYCDNQSAL  
Sbjct: 192 WKAKKQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDLHV-----TLIYCDNQSALQ* 356

Query: 782 IAANPVFHERTKHLEIEC 799
           +    ++H +   LEI+C
Sbjct: 357 LPIKVIYHGQ---LEIDC 401


>BU764568 
          Length = 420

 Score =  102 bits (253), Expect = 9e-22
 Identities = 63/141 (44%), Positives = 83/141 (58%)
 Frame = +3

Query: 655 SVPLQSYCDSLCCSS*NSKVSERESKKRVIFPKEFCSTIVGV**CRLGGCVDTRRSVTSY 714
           SVP  S   SL CS  N +++   S KR    +    +   +  CRL G   T    + Y
Sbjct: 3   SVPELSLPGSLECSQLNPEIN*ECSWKRSHLRR*GTFSNYWLFRCRLSGV--T***TSGY 176

Query: 715 CFFIGNSLICWRSKKQQTISKSSSEAVYRALASATCEL*RLTYLLKDLQIEPVKPSVIYC 774
           C  IG +LI W+SKKQ  ++KSS+EA YRA+A  TCEL  L  LL +L+ E      + C
Sbjct: 177 CVLIGGNLISWKSKKQSVVAKSSAEAEYRAMALVTCELIWLKQLL*ELKFEEDTQMTLIC 356

Query: 775 DNQSALHIAANPVFHERTKHL 795
           DNQ+ALHIA+NP+FH RTKH+
Sbjct: 357 DNQAALHIASNPIFH*RTKHI 419


>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
           Hopscotch polyprotein, partial (7%)
          Length = 1446

 Score =  101 bits (252), Expect = 1e-21
 Identities = 46/92 (50%), Positives = 65/92 (70%)
 Frame = +2

Query: 708 RRSVTSYCFFIGNSLICWRSKKQQTISKSSSEAVYRALASATCEL*RLTYLLKDLQIEPV 767
           R S   YC  IG +L+ W+S K   +++SS+EA Y+A+  ATCEL  +  LL++L+    
Sbjct: 38  RGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQLLQELKFGST 217

Query: 768 KPSVIYCDNQSALHIAANPVFHERTKHLEIEC 799
           +   + CDNQ+ALHIA+NPVFHERTKH+EI+C
Sbjct: 218 QQMKLCCDNQAALHIASNPVFHERTKHIEIDC 313


>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
           partial (7%)
          Length = 336

 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 50/111 (45%), Positives = 67/111 (60%)
 Frame = +3

Query: 340 EPHTYAEASKHKCWVDAMNLEISALEANGTWSLVPLPPNVVPIDNKWVYKIKRRANGTVE 399
           EP    EA     W+  M  E++  E N  W LV  P N   I  KWV++ K   +G + 
Sbjct: 3   EPKNIKEAIVDDNWIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIII 182

Query: 400 RYKARLVA*GYNQIEGIYYFDTFSPTAKLTIVRMVLALASVNNWHLHQLDV 450
           R KARLVA GYNQ EGI Y +T++P A+L  +RM+LA AS+ N+ L+Q+DV
Sbjct: 183 RNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMNFKLYQMDV 335


>CO983516 
          Length = 724

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
 Frame = +2

Query: 422 FSPTAKLTIVRMVLALASVNNWHLHQLDVNNAFLLGDLYEDVYMKVPEG-VSCVDSGKVC 480
           F P A+L  +R++L +A +  + L+Q+DV +AFL G L E+VY++ P+G +       V 
Sbjct: 365 FHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVY 544

Query: 481 KLHKSSYGLKQASRQWYAKFTSLLVTCGYKQAHSDHSLFSKTQGQSFTILLIYVDDII 538
           +L K+ YGLKQA R WY + T LL   GY++   D +LF K   ++  I  IYVDDI+
Sbjct: 545 RLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIV 718


>TC232995 
          Length = 1009

 Score = 93.2 bits (230), Expect = 4e-19
 Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 1/157 (0%)
 Frame = +2

Query: 468 PEGVSCVDS-GKVCKLHKSSYGLKQASRQWYAKFTSLLVTCGYKQAHSDHSLFSKTQGQS 526
           P G    D    V KL K+ YGLKQA R WY + ++ L+   + +   D +LF K +   
Sbjct: 11  PPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRKHND 190

Query: 527 FTILLIYVDDIILAGNFLDEFTRIKAALDNAFKIKDLGVLKYFLGLEVSHSAKGISLCQR 586
             ++ IYVDDII               + + F++  +G LKYFLGL++  +  GI + Q 
Sbjct: 191 ILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFINQS 370

Query: 587 KYCLDLVHDSGVLGSKPVSTPLDPSSRLSQDGGGATL 623
           KYC +L+   G+  +K +STP+  +  L +D  G ++
Sbjct: 371 KYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSI 481


>BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa (japonica
           cultivar-group)}, partial (18%)
          Length = 430

 Score = 68.9 bits (167), Expect(2) = 4e-19
 Identities = 37/90 (41%), Positives = 50/90 (55%)
 Frame = +1

Query: 339 SEPHTYAEASKHKCWVDAMNLEISALEANGTWSLVPLPPNVVPIDNKWVYKIKRRANGTV 398
           +EP T  +A     W  AM  +  AL  N T +L  LP     ID KWV++IK    GT+
Sbjct: 28  AEPSTVKQALISPPWRQAMQADFDALMENKTLTLTSLPSGKAAIDCKWVFRIKENLYGTL 207

Query: 399 ERYKARLVA*GYNQIEGIYYFDTFSPTAKL 428
            RY++RLVA G++   G  Y +TFSP  +L
Sbjct: 208 NRYRSRLVAKGFHLKFGCDYSETFSPVIEL 297



 Score = 44.7 bits (104), Expect(2) = 4e-19
 Identities = 19/35 (54%), Positives = 27/35 (76%)
 Frame = +3

Query: 431 VRMVLALASVNNWHLHQLDVNNAFLLGDLYEDVYM 465
           +R++L +A  N+W L Q+D+NNAFL G L E+VYM
Sbjct: 303 IRLILFIALTNHWPLQQVDINNAFLHGLLTEEVYM 407


>BU548243 
          Length = 599

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 48/94 (51%), Positives = 63/94 (66%)
 Frame = -1

Query: 705 VDTRRSVTSYCFFIGNSLICWRSKKQQTISKSSSEAVYRALASATCEL*RLTYLLKDLQI 764
           VD  RS      F+G +LI W S+KQQ  ++SS+EA YR++A  + EL  +  LL +LQI
Sbjct: 566 VDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQALLMELQI 387

Query: 765 EPVKPSVIYCDNQSALHIAANPVFHERTKHLEIE 798
            P  P VI CDN+SA+ IA N VFH RTKH+EI+
Sbjct: 386 -PFTPPVILCDNKSAVAIAHNLVFHSRTKHMEID 288


>AI959950 
          Length = 466

 Score = 87.0 bits (214), Expect = 3e-17
 Identities = 47/115 (40%), Positives = 71/115 (60%)
 Frame = -1

Query: 356 AMNLEISALEANGTWSLVPLPPNVVPIDNKWVYKIKRRANGTVERYKARLVA*GYNQIEG 415
           AM  E+   + N    LV LP     +  KW++  K   +G V RYKARLVA GY+Q EG
Sbjct: 391 AMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEG 212

Query: 416 IYYFDTFSPTAKLTIVRMVLALASVNNWHLHQLDVNNAFLLGDLYEDVYMKVPEG 470
           I Y  TF+  A+L ++ ++L+ A+ +N  L+Q+DV +AFL G + ++VY++ P G
Sbjct: 211 IDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPG 47


>AW759031 weakly similar to GP|22093573|db polyprotein {Oryza sativa
           (japonica cultivar-group)}, partial (5%)
          Length = 430

 Score = 69.7 bits (169), Expect(2) = 5e-16
 Identities = 35/88 (39%), Positives = 54/88 (60%), Gaps = 1/88 (1%)
 Frame = +3

Query: 494 RQWYAKFTSLLVTCGYKQAHSDHSLFSKTQGQSFTI-LLIYVDDIILAGNFLDEFTRIKA 552
           R W+ +F+S L+     +  +DHS+FS        I L++Y+DDI++ G+  D   R+K+
Sbjct: 6   RAWFGRFSSELLQFCMTRYEADHSVFSLHSPSGLCIYLVVYLDDIVITGDDFDGIHRLKS 185

Query: 553 ALDNAFKIKDLGVLKYFLGLEVSHSAKG 580
            L N F+ KDLG   YFLG+EV+ S+ G
Sbjct: 186 HLHNKFQTKDLGPPNYFLGIEVAQSSSG 269



 Score = 33.5 bits (75), Expect(2) = 5e-16
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +2

Query: 581 ISLCQRKYCLDLVHDSGVLGSKPVSTPLDPSSRL 614
           IS+ QRKY LD++ ++ +L  +   TP+DP+ +L
Sbjct: 269 ISISQRKYVLDILIETSMLDFRHSDTPMDPNIKL 370


>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
          Length = 493

 Score = 82.4 bits (202), Expect = 7e-16
 Identities = 40/91 (43%), Positives = 58/91 (62%)
 Frame = +3

Query: 706 DTRRSVTSYCFFIGNSLICWRSKKQQTISKSSSEAVYRALASATCEL*RLTYLLKDLQIE 765
           D R+S T + FF+G++   W SKKQ  ++ S+ EA Y A  S  C    L  LLK+L++ 
Sbjct: 9   DDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMP 188

Query: 766 PVKPSVIYCDNQSALHIAANPVFHERTKHLE 796
             +P  I  DN+SAL +A NPVFHE++KH++
Sbjct: 189 QEEPMEICVDNKSALALAKNPVFHEKSKHID 281


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.338    0.145    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,986,565
Number of Sequences: 63676
Number of extensions: 608966
Number of successful extensions: 6458
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 6234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6390
length of query: 799
length of database: 12,639,632
effective HSP length: 105
effective length of query: 694
effective length of database: 5,953,652
effective search space: 4131834488
effective search space used: 4131834488
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 63 (28.9 bits)