BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0171.3
(96 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227653 similar to UP|O80383 (O80383) 98b, partial (78%) 29 0.33
TC208586 similar to UP|Q43323 (Q43323) Membrane protein, partial... 29 0.44
TC220507 similar to UP|Q7Q3J9 (Q7Q3J9) AgCP11343 (Fragment), par... 29 0.44
BQ627962 similar to GP|294845|gb|AA membrane protein {Saccharum ... 28 0.57
TC222960 similar to UP|Q43323 (Q43323) Membrane protein, partial... 28 0.97
TC225394 UP|SUSY_SOYBN (P13708) Sucrose synthase (Sucrose-UDP g... 27 2.2
TC214197 similar to UP|Q6UNT2 (Q6UNT2) 60S ribosomal protein L5,... 27 2.2
TC214267 similar to UP|Q6UNT2 (Q6UNT2) 60S ribosomal protein L5,... 27 2.2
TC208003 similar to UP|Q6VBB5 (Q6VBB5) Heat shock factor RHSF2, ... 26 2.8
TC208591 similar to UP|Q6NM33 (Q6NM33) At5g19340, partial (31%) 26 2.8
TC221754 similar to UP|Q06312 (Q06312) H(+)/MONOSACCHARIDE cotra... 26 2.8
AI938553 26 2.8
TC225488 homologue to UP|Q7XAU4 (Q7XAU4) Ethylene responsive pro... 26 2.8
BI425304 similar to GP|15528642|dbj P0011G08.35 {Oryza sativa (j... 26 2.8
TC216649 weakly similar to UP|Q840B9 (Q840B9) Endo-b1,4-mannanas... 26 3.7
TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, pa... 26 3.7
TC222982 UP|Q9SJF7 (Q9SJF7) T27G7.3, partial (5%) 25 4.8
TC226106 similar to UP|Q9FGQ2 (Q9FGQ2) MtN3-like protein, partia... 25 4.8
BE609363 25 6.3
CA801450 25 6.3
>TC227653 similar to UP|O80383 (O80383) 98b, partial (78%)
Length = 1654
Score = 29.3 bits (64), Expect = 0.33
Identities = 13/42 (30%), Positives = 23/42 (53%), Gaps = 1/42 (2%)
Frame = +2
Query: 38 HCSCLRKERRAKI-ARADSNTETGEQSIKESRVAVSSSTSSL 78
HC+CLR+ R+ KI +R + T + +R+ + + SL
Sbjct: 1121 HCNCLRRRRKLKI*SRKQNRTARRRNRTRMTRILIQTGLRSL 1246
>TC208586 similar to UP|Q43323 (Q43323) Membrane protein, partial (66%)
Length = 893
Score = 28.9 bits (63), Expect = 0.44
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 18 LALNVSFILRLLFEGEEGHDHC 39
L + +S L +LF GE G+DHC
Sbjct: 650 LIVGLSIALVMLFRGESGYDHC 715
>TC220507 similar to UP|Q7Q3J9 (Q7Q3J9) AgCP11343 (Fragment), partial (3%)
Length = 829
Score = 28.9 bits (63), Expect = 0.44
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -1
Query: 53 ADSNTETGEQSIKESRVAVSSSTSSLANST-CK 84
+DSN ET E+S +E ++SSS S+ + S+ CK
Sbjct: 232 SDSNQETEEESDEEPNPSISSSASTTSTSSHCK 134
>BQ627962 similar to GP|294845|gb|AA membrane protein {Saccharum hybrid
cultivar H65-7052}, partial (12%)
Length = 415
Score = 28.5 bits (62), Expect = 0.57
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 18 LALNVSFILRLLFEGEEGHDHC 39
L + +S L +LF GE G+DHC
Sbjct: 127 LNVRLSIALVMLFRGESGYDHC 192
>TC222960 similar to UP|Q43323 (Q43323) Membrane protein, partial (52%)
Length = 731
Score = 27.7 bits (60), Expect = 0.97
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +1
Query: 13 LLVLSLAL---NVSFILRLLFEGEEGHDHCSCLR 43
L V+SL L +S L +LF GE+G+DHC R
Sbjct: 394 LWVVSLILLIAGLSTALVMLFLGEKGYDHCHWCR 495
>TC225394 UP|SUSY_SOYBN (P13708) Sucrose synthase (Sucrose-UDP
glucosyltransferase) (Nodulin-100) , complete
Length = 3328
Score = 26.6 bits (57), Expect = 2.2
Identities = 11/35 (31%), Positives = 21/35 (59%)
Frame = +3
Query: 7 VFSLRHLLVLSLALNVSFILRLLFEGEEGHDHCSC 41
++SL HL ++ + SF+++L GE+ + SC
Sbjct: 2538 IWSLSHLSFINNVRDFSFVIKLSIRGEKEKEKKSC 2642
>TC214197 similar to UP|Q6UNT2 (Q6UNT2) 60S ribosomal protein L5, partial
(67%)
Length = 904
Score = 26.6 bits (57), Expect = 2.2
Identities = 15/41 (36%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Frame = -3
Query: 5 PNVFSLRHLLVLSLALNVSFILRL---LFEGEEGHDHCSCL 42
P S H +VLS +LN+SF+L + FE G S +
Sbjct: 134 PPALSRFH*IVLSSSLNISFVLLIHFKCFEDSSGQQETSAI 12
>TC214267 similar to UP|Q6UNT2 (Q6UNT2) 60S ribosomal protein L5, partial
(97%)
Length = 1300
Score = 26.6 bits (57), Expect = 2.2
Identities = 15/41 (36%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Frame = -3
Query: 5 PNVFSLRHLLVLSLALNVSFILRL---LFEGEEGHDHCSCL 42
P S H ++LS +LN+SFIL + FE G S +
Sbjct: 470 PPALSRFHGIILSSSLNISFILLIHFKCFEDSSGQQETSAI 348
>TC208003 similar to UP|Q6VBB5 (Q6VBB5) Heat shock factor RHSF2, partial
(15%)
Length = 1105
Score = 26.2 bits (56), Expect = 2.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 60 GEQSIKESRVAVSSSTSSLANSTCK 84
GE+ +K +R +S STS + + +CK
Sbjct: 845 GEREMKRNRAEMSESTSIMLSQSCK 919
>TC208591 similar to UP|Q6NM33 (Q6NM33) At5g19340, partial (31%)
Length = 835
Score = 26.2 bits (56), Expect = 2.8
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = +2
Query: 39 CSCLRKERRAKIARADSNTETGEQSIKESRVA 70
C C R+ERR K + E G++ + ES+V+
Sbjct: 137 CGCQRRERRVKE**QRAACEEGKERVGESKVS 232
>TC221754 similar to UP|Q06312 (Q06312) H(+)/MONOSACCHARIDE cotransporter,
partial (24%)
Length = 582
Score = 26.2 bits (56), Expect = 2.8
Identities = 14/44 (31%), Positives = 20/44 (44%)
Frame = -2
Query: 26 LRLLFEGEEGHDHCSCLRKERRAKIARADSNTETGEQSIKESRV 69
LR E+GHD C ++E +AK+ A + E E V
Sbjct: 356 LRQQHGNEDGHDEYKCSKEEEKAKLQVAKHD*ENLSNRKSEQHV 225
>AI938553
Length = 409
Score = 26.2 bits (56), Expect = 2.8
Identities = 13/36 (36%), Positives = 18/36 (49%)
Frame = +1
Query: 14 LVLSLALNVSFILRLLFEGEEGHDHCSCLRKERRAK 49
L LSL+L++S L L H H +R+ R K
Sbjct: 16 LSLSLSLSLSLSLSLSLSDSRSHSHTVSVRERERGK 123
>TC225488 homologue to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein,
partial (55%)
Length = 1103
Score = 26.2 bits (56), Expect = 2.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 40 SCLRKERRAKIARADSNTETGEQSIKESRVAVSSSTSSLANSTCKD 85
S L K+ A A+A S E ++ ++ SSS A S+C D
Sbjct: 579 SSLSKDANAASAQASSRKEGVSKNFSWDSMSASSSERVFAESSCTD 442
>BI425304 similar to GP|15528642|dbj P0011G08.35 {Oryza sativa (japonica
cultivar-group)}, partial (13%)
Length = 421
Score = 26.2 bits (56), Expect = 2.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 14 LVLSLALNVSFILRLLFEGEEGHDHC 39
L LSL+L++S L L E EE +HC
Sbjct: 9 LSLSLSLSLSLSLSLSLEEEEQGEHC 86
>TC216649 weakly similar to UP|Q840B9 (Q840B9) Endo-b1,4-mannanase 26B,
partial (7%)
Length = 470
Score = 25.8 bits (55), Expect = 3.7
Identities = 12/43 (27%), Positives = 24/43 (54%)
Frame = -3
Query: 43 RKERRAKIARADSNTETGEQSIKESRVAVSSSTSSLANSTCKD 85
R + + ++ S+ T ++S+KE+ V+ + TSS + KD
Sbjct: 327 RSKSEEQKEKSKSHKRTSKKSVKENSVSKADRTSSAKKTPVKD 199
>TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (41%)
Length = 2064
Score = 25.8 bits (55), Expect = 3.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 52 RADSNTETGEQSIKESRVAVSSSTSSLANSTCKD 85
++ S T ++++KES V+ + TSS+ + KD
Sbjct: 1180 KSKSRKRTSKKAVKESSVSKADRTSSVKKTPVKD 1281
>TC222982 UP|Q9SJF7 (Q9SJF7) T27G7.3, partial (5%)
Length = 1161
Score = 25.4 bits (54), Expect = 4.8
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -2
Query: 17 SLALNVSFILRLLFEGEEGHDHCSCLRKERRAKIARADSNTETGEQSIKE 66
SL N + +L ++ + E GH C CL + R +N +T ++++E
Sbjct: 302 SLRRNGNDMLPIMPQDEGGHGWCCCLAMQFGWNRRRIAANIDTRVRALQE 153
>TC226106 similar to UP|Q9FGQ2 (Q9FGQ2) MtN3-like protein, partial (31%)
Length = 502
Score = 25.4 bits (54), Expect = 4.8
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -1
Query: 2 AKLPNVFSLRHLLVLSLALNVSFILRLLFEGEEG 35
AKL ++ L LSL+L++S I R L EG EG
Sbjct: 220 AKLR*LWDDMVLEFLSLSLSLSLIFRPLSEGREG 119
>BE609363
Length = 457
Score = 25.0 bits (53), Expect = 6.3
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -3
Query: 12 HLLVLSLALNVSFILRL---LFEGEEGHDHCSCL 42
H ++LS +LN+SFIL + FE G S +
Sbjct: 236 H*IILSSSLNISFILLIHFKCFEDSSGQQETSAI 135
>CA801450
Length = 409
Score = 25.0 bits (53), Expect = 6.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 14 LVLSLALNVSFILRLLFEGE 33
L+L L L +SFI L+FE E
Sbjct: 212 LILELLLELSFIKELIFEAE 153
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,383,600
Number of Sequences: 63676
Number of extensions: 49030
Number of successful extensions: 370
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of query: 96
length of database: 12,639,632
effective HSP length: 72
effective length of query: 24
effective length of database: 8,054,960
effective search space: 193319040
effective search space used: 193319040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0171.3