BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0166.9
(746 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC206906 similar to UP|Q6Z901 (Q6Z901) Kinesin light chain-like ... 469 e-132
TC235021 similar to UP|Q7XA91 (Q7XA91) At3g27960, partial (23%) 261 1e-69
BG043253 175 1e-55
TC232427 similar to UP|Q6Z901 (Q6Z901) Kinesin light chain-like ... 189 4e-48
TC230349 weakly similar to UP|Q15287 (Q15287) RNA-binding protei... 183 2e-46
AW186182 similar to GP|9294312|dbj contains similarity to kinesi... 174 1e-43
AI507873 172 5e-43
TC232391 similar to UP|Q7XA91 (Q7XA91) At3g27960, partial (14%) 164 2e-40
TC230348 123 3e-28
TC224048 similar to UP|Q8LBI4 (Q8LBI4) Nicotiana lesion-inducing... 37 0.042
TC230269 weakly similar to UP|WSC2_YEAST (P53832) Cell wall inte... 35 0.093
TC233446 similar to UP|Q6K715 (Q6K715) Kinesin light chain-like,... 35 0.12
BF425630 35 0.16
TC217042 UP|Q6I684 (Q6I684) Protein disulfide isomerase-like pro... 34 0.21
TC205329 similar to UP|Q9LW57 (Q9LW57) Arabidopsis thaliana geno... 32 0.79
TC213501 32 0.79
TC215362 homologue to UP|Q8LRL5 (Q8LRL5) Nam-like protein 10, pa... 32 1.0
TC214142 similar to PIR|T49142|T49142 CCR4-associated factor 1-l... 32 1.0
TC214570 homologue to PIR|T05766|T05766 peptidylprolyl isomerase... 32 1.3
CF922863 31 1.8
>TC206906 similar to UP|Q6Z901 (Q6Z901) Kinesin light chain-like protein,
partial (58%)
Length = 1342
Score = 469 bits (1207), Expect = e-132
Identities = 227/341 (66%), Positives = 288/341 (83%)
Frame = +1
Query: 396 LDIHKANSSAPSLEEAADRRLMGLILDTKGNHEAALEHLVLASMAMVANGQEVEVASVDC 455
L+IH+A+S SLEEAADRRLM LI + KG++E+ALEHLVLASMAM+ANGQ+ EVAS+D
Sbjct: 25 LEIHRAHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVASIDV 204
Query: 456 SIGDTYLSMSRYDEAVFAYEKALTVFKTGKGENHPAVGSVFVRLADLHNRTGKIKESKSY 515
SIG+ Y+S+ R+DEA+F+Y+KALTVFK+ KGENHP+V SVFVRLADL++RTGK++ESKSY
Sbjct: 205 SIGNIYMSLCRFDEAIFSYQKALTVFKSAKGENHPSVASVFVRLADLYHRTGKLRESKSY 384
Query: 516 CDSALRIYENPMPGVNPEEIASGLTNVSAIYESMNELEKALKLLQKALLIYNDSPGQQSS 575
C++ALRIY P+PG EEIA GLT +SA++ES++E E+ALKLL +A+ + D PGQQS+
Sbjct: 385 CENALRIYSKPVPGTTAEEIAGGLTEISAVFESVDEPEEALKLLNRAMKLLEDKPGQQST 564
Query: 576 IAGIEAQMGVMYYMLGNYTESYNTLKNAITKLRAIGEKKSSFIGIALNQMGLACVQLYAF 635
IAGIEA+MGVMYYM+G Y +S N+ ++A+ KLRA GE+KS+F G+ LNQMGLACVQL+
Sbjct: 565 IAGIEARMGVMYYMIGRYEDSRNSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKI 744
Query: 636 GEATELFEEAKSILEHEYGPYHPETLGVYSNLAGTYDAIGRLDEAIQILEYVVSVREEKL 695
EA ELFEEA+ ILE E GP H +TLGVYSNLA TYDA+GR+ +AI+ILEYV+ +REEKL
Sbjct: 745 DEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKL 924
Query: 696 GTANPDVDDEKRRLSELLKEAGRVRSRKVMSLENLLDANAR 736
G ANPD +DEKRRL+ELLKEAG+ R RK SLENL+D ++
Sbjct: 925 GIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPGSK 1047
>TC235021 similar to UP|Q7XA91 (Q7XA91) At3g27960, partial (23%)
Length = 686
Score = 261 bits (666), Expect = 1e-69
Identities = 134/158 (84%), Positives = 142/158 (89%)
Frame = +1
Query: 589 MLGNYTESYNTLKNAITKLRAIGEKKSSFIGIALNQMGLACVQLYAFGEATELFEEAKSI 648
MLGNY++SYNTLKNAI+KLRAIGEKKSSF GIALNQMGLACVQ YA EATELFEEAKS
Sbjct: 1 MLGNYSKSYNTLKNAISKLRAIGEKKSSFFGIALNQMGLACVQCYALSEATELFEEAKSF 180
Query: 649 LEHEYGPYHPETLGVYSNLAGTYDAIGRLDEAIQILEYVVSVREEKLGTANPDVDDEKRR 708
LEHEYGPYHPETLGV SNLA TYDAIGRLD+AIQILEYVV+ REEKLGTANP+VDDEKRR
Sbjct: 181 LEHEYGPYHPETLGVSSNLAATYDAIGRLDDAIQILEYVVNTREEKLGTANPEVDDEKRR 360
Query: 709 LSELLKEAGRVRSRKVMSLENLLDANARIPNINLVIKA 746
L ELLKEAGRVRSRK SLENLLD NA N N+VI+A
Sbjct: 361 LGELLKEAGRVRSRKTRSLENLLDGNAHAAN-NVVIRA 471
>BG043253
Length = 411
Score = 175 bits (443), Expect(2) = 1e-55
Identities = 86/103 (83%), Positives = 96/103 (92%)
Frame = +2
Query: 449 EVASVDCSIGDTYLSMSRYDEAVFAYEKALTVFKTGKGENHPAVGSVFVRLADLHNRTGK 508
EVASVDCSIGDTYLS+SRYDEAVFAY+KALTVFKT KGENHPAVG VF+RLADL+NRTGK
Sbjct: 5 EVASVDCSIGDTYLSLSRYDEAVFAYQKALTVFKTSKGENHPAVGLVFLRLADLYNRTGK 184
Query: 509 IKESKSYCDSALRIYENPMPGVNPEEIASGLTNVSAIYESMNE 551
I+ESKSYC+SAL+IYENPMPG+ PEEIASGLTN+ I E +NE
Sbjct: 185 IRESKSYCESALKIYENPMPGIPPEEIASGLTNILTI*E-LNE 310
Score = 60.8 bits (146), Expect(2) = 1e-55
Identities = 30/35 (85%), Positives = 33/35 (93%)
Frame = +3
Query: 549 MNELEKALKLLQKALLIYNDSPGQQSSIAGIEAQM 583
MN+LE ALKLLQKAL IYND+PGQQS+IAGIEAQM
Sbjct: 306 MNDLEHALKLLQKALEIYNDTPGQQSTIAGIEAQM 410
>TC232427 similar to UP|Q6Z901 (Q6Z901) Kinesin light chain-like protein,
partial (24%)
Length = 504
Score = 189 bits (480), Expect = 4e-48
Identities = 94/130 (72%), Positives = 112/130 (85%), Gaps = 1/130 (0%)
Frame = +2
Query: 607 LRAIGEKKSSFIGIALNQMGLACVQLYAFGEATELFEEAKSILEHEYGPYHPETLGVYSN 666
LRA GEKKS+F G+ LNQMGLACVQLY G+A + FEEAK ILE E G YH +TLGVYSN
Sbjct: 2 LRASGEKKSAFFGVVLNQMGLACVQLYKIGDAAKHFEEAKEILERECGTYHSDTLGVYSN 181
Query: 667 LAGTYDAIGRLDEAIQILEYVVSVREEKLGTANPDVDDEKRRLSELLKEAGRVRSRK-VM 725
LA TYDA+GR+++AI+ILEY++ +REEKLGTANPDVDDEK+RL ELLKEAGRVR+RK
Sbjct: 182 LAATYDALGRVEDAIEILEYILKMREEKLGTANPDVDDEKKRLFELLKEAGRVRNRKGKK 361
Query: 726 SLENLLDANA 735
SLENL+D+N+
Sbjct: 362 SLENLIDSNS 391
>TC230349 weakly similar to UP|Q15287 (Q15287) RNA-binding protein S1,
serine-rich domain, partial (12%)
Length = 479
Score = 183 bits (465), Expect = 2e-46
Identities = 84/152 (55%), Positives = 117/152 (76%), Gaps = 1/152 (0%)
Frame = +1
Query: 230 AESALDKPERAPILLKQARDLISSGDNPQKALELALQAMNLLEKLG-NGKPSLELVMCLH 288
++++LD P+ P LLK ARD I+SGD P KAL+ A++A E+ G+PSL+L M LH
Sbjct: 22 SDASLDNPDLGPFLLKLARDTIASGDGPSKALDFAIRASKSFERCAVEGEPSLDLAMSLH 201
Query: 289 VTAAIYCNLGQYNEAIPILERSIEIPVIGESQQHALAKFAGHMQLGDTYAMLGQLENSIM 348
V AAIYC+LG+++EA+P+LER+I++P + HALA F+G+MQLGDT++MLGQ++ SI
Sbjct: 202 VLAAIYCSLGRFDEAVPVLERAIQVPDVERGADHALAAFSGYMQLGDTFSMLGQVDRSIS 381
Query: 349 CYSSGFEVQRQVLGETDPRVGETCRYVAEANV 380
CY G ++Q Q LG++DPRVGETCRY+ EANV
Sbjct: 382 CYDQGLQIQIQALGDSDPRVGETCRYLTEANV 477
Score = 37.4 bits (85), Expect = 0.025
Identities = 22/63 (34%), Positives = 35/63 (54%), Gaps = 1/63 (1%)
Frame = +1
Query: 461 YLSMSRYDEAVFAYEKALTVFKTGKGENHP-AVGSVFVRLADLHNRTGKIKESKSYCDSA 519
Y S+ R+DEAV E+A+ V +G +H A S +++L D + G++ S S D
Sbjct: 217 YCSLGRFDEAVPVLERAIQVPDVERGADHALAAFSGYMQLGDTFSMLGQVDRSISCYDQG 396
Query: 520 LRI 522
L+I
Sbjct: 397 LQI 405
>AW186182 similar to GP|9294312|dbj contains similarity to kinesin light
chain~gene_id:K24A2.5 {Arabidopsis thaliana}, partial
(16%)
Length = 333
Score = 174 bits (441), Expect = 1e-43
Identities = 83/110 (75%), Positives = 98/110 (88%)
Frame = +3
Query: 310 SIEIPVIGESQQHALAKFAGHMQLGDTYAMLGQLENSIMCYSSGFEVQRQVLGETDPRVG 369
SI+IPV+ + Q HALAKFAG MQLGDTYAM+GQ+ENS++ Y++G E+Q QVLGETDPR G
Sbjct: 3 SIDIPVLEDGQDHALAKFAGCMQLGDTYAMMGQIENSLLFYTAGLEIQGQVLGETDPRFG 182
Query: 370 ETCRYVAEANVQALQFDEAERLCQMALDIHKANSSAPSLEEAADRRLMGL 419
ETCRYVAEA+VQALQFDEAE+LCQMALDIH+ N + S+EEAADRRLMGL
Sbjct: 183 ETCRYVAEAHVQALQFDEAEKLCQMALDIHRGNGAPASIEEAADRRLMGL 332
>AI507873
Length = 405
Score = 172 bits (436), Expect = 5e-43
Identities = 83/133 (62%), Positives = 108/133 (80%)
Frame = +2
Query: 446 QEVEVASVDCSIGDTYLSMSRYDEAVFAYEKALTVFKTGKGENHPAVGSVFVRLADLHNR 505
++ EVA++D SIGD YLS+ R+DEAVFAY+KALTVFK+ KGE+H V V++RLADL+ R
Sbjct: 5 EDNEVAAIDVSIGDIYLSLCRFDEAVFAYQKALTVFKSTKGESHSCVALVYIRLADLYYR 184
Query: 506 TGKIKESKSYCDSALRIYENPMPGVNPEEIASGLTNVSAIYESMNELEKALKLLQKALLI 565
TGK++ESKSYC++ALRIY P+ G EIASGLT +SAIYE++NE E+ALKLLQKA+ +
Sbjct: 185 TGKLRESKSYCENALRIYSKPVAGTTAGEIASGLTEISAIYEALNEPEEALKLLQKAVKL 364
Query: 566 YNDSPGQQSSIAG 578
D PGQ ++AG
Sbjct: 365 LEDIPGQYRTVAG 403
>TC232391 similar to UP|Q7XA91 (Q7XA91) At3g27960, partial (14%)
Length = 562
Score = 164 bits (414), Expect = 2e-40
Identities = 81/113 (71%), Positives = 97/113 (85%), Gaps = 1/113 (0%)
Frame = +3
Query: 630 VQLYAFGEATELFEEAKSILEHEYGPYHPETLGVYSNLAGTYDAIGRLDEAIQILEYVVS 689
VQ YA EA +LFEEA++ILE EYGPYHP+TLGVYSNLAGTYDA+GR+D+AI+ILEYVV
Sbjct: 3 VQCYAINEAADLFEEARTILEKEYGPYHPDTLGVYSNLAGTYDAMGRVDDAIEILEYVVG 182
Query: 690 VREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKV-MSLENLLDANARIPNIN 741
+REEKLGTANPDVDDEKRRL ELLKE+GR R+R+ SLE LLD ++++ N
Sbjct: 183 MREEKLGTANPDVDDEKRRLEELLKESGRARNRRSRRSLETLLDTHSQLVKNN 341
>TC230348
Length = 438
Score = 123 bits (309), Expect = 3e-28
Identities = 62/132 (46%), Positives = 87/132 (64%), Gaps = 1/132 (0%)
Frame = +1
Query: 207 SGVKSLKSSPLGKSVSLNRVENSAESALDKPERAPILLKQARDLISSGDNPQKALELALQ 266
S V +SP S + ++++LD P+ P LLK ARD I+SGD P KAL+ A++
Sbjct: 43 SPVPKKAASPSPSGSSKKKAPLLSDASLDNPDLGPFLLKLARDTIASGDGPAKALDFAIR 222
Query: 267 AMNLLEKLG-NGKPSLELVMCLHVTAAIYCNLGQYNEAIPILERSIEIPVIGESQQHALA 325
A E+ G+PSL+L M LHV AAIYC+LG++ EA+P+LER+I +P + HALA
Sbjct: 223 ASTSFERCAIQGEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLERAILVPDVDRGPDHALA 402
Query: 326 KFAGHMQLGDTY 337
F+G+MQLGDT+
Sbjct: 403 SFSGYMQLGDTF 438
>TC224048 similar to UP|Q8LBI4 (Q8LBI4) Nicotiana lesion-inducing like,
partial (8%)
Length = 330
Score = 36.6 bits (83), Expect = 0.042
Identities = 20/29 (68%), Positives = 22/29 (74%)
Frame = +2
Query: 718 RVRSRKVMSLENLLDANARIPNINLVIKA 746
RVRSRK SLENLLD NA N N+VI+A
Sbjct: 17 RVRSRKARSLENLLDGNAHAAN-NVVIRA 100
>TC230269 weakly similar to UP|WSC2_YEAST (P53832) Cell wall integrity and
stress response component 2 precursor, partial (6%)
Length = 696
Score = 35.4 bits (80), Expect = 0.093
Identities = 34/110 (30%), Positives = 48/110 (42%), Gaps = 8/110 (7%)
Frame = +2
Query: 94 ELRQLVGGRMREVEIMEEEVEVEVEKERGGSSSGEISSGVGGLSSNEKKLDKVHEIQSAT 153
EL +L ++++V+ EE VEVEVEK+ EKK K + +++
Sbjct: 62 ELEKLEKVKVKKVD--EETVEVEVEKK-------------------EKKKKKKKDKENSE 178
Query: 154 TSSVSTEKSVKALNS--------QLDASPKSKPKGKSPPAKAPLERKNDK 195
+S EK+ K N +LD S K K K K A A E N K
Sbjct: 179 VASSDEEKTEKKKNKNKIEDGSPELDKSEKKKKKKKDKAAAAAAEISNGK 328
>TC233446 similar to UP|Q6K715 (Q6K715) Kinesin light chain-like, partial
(22%)
Length = 698
Score = 35.0 bits (79), Expect = 0.12
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = +1
Query: 637 EATELFEEAKSILEHEYGPYHPETLGVYSNLAGTYDAIGRLDEAIQILEYVVSVREEKLG 696
+A E A L+ +GP H +Y+NL Y + R A Q+ + + LG
Sbjct: 61 QAIPYLESAAERLKDSFGPKHFGVGYIYNNLGAAYLELDRPQSAAQMFAVAKDIMDTSLG 240
Query: 697 TANPDVDDEKRRLSELLKEAG 717
+ D + + LS+ E G
Sbjct: 241 PHHADTIEACQNLSKAYGEMG 303
>BF425630
Length = 421
Score = 34.7 bits (78), Expect = 0.16
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
Frame = +2
Query: 461 YLSMSRYDEAVFAYEKALTVFKTGKGENHPAVGSVF----VRLADLHNRTGKIKESKSYC 516
Y + Y+ A + + L V +GE H +F + L +LH+ + +S Y
Sbjct: 32 YHELGNYELAYTYFCEPLRVCIELQGEEHFDTAKLFNNIGLSLYNLHDYS----KSMEYF 199
Query: 517 DSALRIYENPMPGVNPEEIASGLTNVSAIYESMNELEKALKLLQKALLIYNDSPGQQSSI 576
AL IY + ++A+ TN+++IY+ + L+ AL+ + I Q S
Sbjct: 200 QKALEIYSELCQD-DHIDMANFYTNIASIYDQEDNLDIALQYYDECKRIRRQYLTQDHS- 373
Query: 577 AGIEAQMGVMYYMLGNYTES 596
++G +YY LG S
Sbjct: 374 -----EIGTVYYSLGTIYHS 418
>TC217042 UP|Q6I684 (Q6I684) Protein disulfide isomerase-like protein,
complete
Length = 1422
Score = 34.3 bits (77), Expect = 0.21
Identities = 55/257 (21%), Positives = 103/257 (39%), Gaps = 12/257 (4%)
Frame = +1
Query: 427 HEAALEHLVLASMAMVANGQEVEVASVDCSIGDTYLSMSRYDEAVFAYEKALTVFKTGKG 486
+E A LA+ + G V++ASV S+ LS + +DE VF K + V
Sbjct: 463 YEGARTAEALAAFVNIEAGTNVKIASVASSV--VVLSPNNFDEVVFDETKDVLVEFYAPW 636
Query: 487 ENH-PAVGSVFVRLADLHNRTGKIK----ESKSYCDSALRIYENPMPGVN--PEEIASGL 539
H A+ ++ ++A N + ++ Y D A + + P + P+ +G
Sbjct: 637 CGHCKALAPIYEKVAAAFNLDKDVVIANVDADKYKDLAEKYGVSGYPTLKFFPKSNKAGE 816
Query: 540 TNVSAIYESMNELEKALKLLQKALLIYNDSPGQQSSIAGIEAQMG--VMYYMLGNYTES- 596
Y+ +L+ + + + Y D GQ +S AGI A + V ++ + E
Sbjct: 817 N-----YDGGRDLDDFVAFINEKCGTYRDGKGQLTSKAGIIASLDDLVKEFVSADSNEKK 981
Query: 597 --YNTLKNAITKLRAIGEKKSSFIGIALNQMGLACVQLYAFGEATELFEEAKSILEHEYG 654
Y+ L+ + KL+ + + + L + G+ YA E L + +LE
Sbjct: 982 AVYSRLEEEVKKLKGSSARHGD-LYLKLAKKGIEKGADYAKNEIQRL----ERMLEKSIS 1146
Query: 655 PYHPETLGVYSNLAGTY 671
P + + N+ +
Sbjct: 1147PAKADEFTLKKNILSIF 1197
>TC205329 similar to UP|Q9LW57 (Q9LW57) Arabidopsis thaliana genomic DNA,
chromosome 3, P1 clone: MLM24, partial (62%)
Length = 1036
Score = 32.3 bits (72), Expect = 0.79
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 3/149 (2%)
Frame = +2
Query: 167 NSQLDASPKSKPKGKSPPAKAPLERKNDKPLLRKQTKGVASGVKSLKSSPLGKSVSLNRV 226
N+ L +PK + S K+ + + P + + SLK + L LNR
Sbjct: 101 NTHLLLTPKPSQRRPSLVVKSTVGVADPSPSSSSYAGDTSDSISSLKLNLLSAVSGLNRG 280
Query: 227 ENSAESALDKPERAPILLKQARDLISSG---DNPQKALELALQAMNLLEKLGNGKPSLEL 283
++E L K + A L+ A L+ DN Q +L + LG +P +
Sbjct: 281 LAASEDDLRKADDAAKELEAAGGLVDLSLGLDNLQGRWKLIYSSAFSSRTLGGSRPGPPI 460
Query: 284 VMCLHVTAAIYCNLGQYNEAIPILERSIE 312
L +T LGQ + I IL + +
Sbjct: 461 GRLLPIT------LGQVFQRIDILSKDFD 529
>TC213501
Length = 804
Score = 32.3 bits (72), Expect = 0.79
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +3
Query: 78 SRKSFGSDGDESRIDSELRQLVGGRMREVEIMEEEVEVEVEKERGGSSSGEISSGVGGLS 137
S+K GS + E + + E ++ E+E E E+E G + S G G
Sbjct: 195 SKKFRGSKKKNKHNEGESGSEISSAVGEEKLPILEIEEEEEEENGDNKSSNTKPGCGITC 374
Query: 138 SNEKKLDKVHEIQSA 152
S EKK+++V S+
Sbjct: 375 SYEKKVNRVENSGSS 419
>TC215362 homologue to UP|Q8LRL5 (Q8LRL5) Nam-like protein 10, partial (63%)
Length = 1565
Score = 32.0 bits (71), Expect = 1.0
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = -3
Query: 475 EKALTVFKTGKGENHPAVGSVFVRLADLHNR 505
++AL V TGK NH +G F +DLH R
Sbjct: 615 DRALLVVNTGKAPNHVPLGCSFCERSDLHRR 523
>TC214142 similar to PIR|T49142|T49142 CCR4-associated factor 1-like protein -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(85%)
Length = 1439
Score = 32.0 bits (71), Expect = 1.0
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 18/93 (19%)
Frame = -3
Query: 83 GSDGDESRIDSELRQL-----VGGRMREVEIMEEE-------------VEVEVEKERGGS 124
G DESR E + VGG RE++ + E VEV + G+
Sbjct: 1035 GIVADESRRHHEFSEARGLYAVGGVTREIDSLTAEEIDGVQRVGVTRNVEVTEVEFPDGA 856
Query: 125 SSGEISSGVGGLSSNEKKLDKVHEIQSATTSSV 157
SGEI GG+ +E LD+V + +V
Sbjct: 855 VSGEIGKVAGGVGESEADLDEVESVDVGLEEAV 757
>TC214570 homologue to PIR|T05766|T05766 peptidylprolyl isomerase M4E13.20 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(13%)
Length = 944
Score = 31.6 bits (70), Expect = 1.3
Identities = 24/86 (27%), Positives = 38/86 (43%)
Frame = +2
Query: 102 RMREVEIMEEEVEVEVEKERGGSSSGEISSGVGGLSSNEKKLDKVHEIQSATTSSVSTEK 161
+++ ++ EE VEVEVEK+ + SS+E+K +K +
Sbjct: 434 KVKVKKVDEETVEVEVEKKEKKKKKKKNKENSEAASSDEEKTEK---------KKKKHKD 586
Query: 162 SVKALNSQLDASPKSKPKGKSPPAKA 187
V+ + +LD S K K K K A A
Sbjct: 587 KVEDSSPELDKSEKKKKKKKDKEAAA 664
>CF922863
Length = 392
Score = 31.2 bits (69), Expect = 1.8
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Frame = +1
Query: 175 KSKPKGKSPPAKAPLERKNDKPLLRKQTKGVASGVKSLKSSPLGKS-------VSLNRVE 227
+ +PK PP K P K K L KG G + K P GK+ R +
Sbjct: 169 QKEPKTPPPPKKRPRGEKKKKTLSPPNPKGAPPGPREGKKKPGGKTPPPPGGPEKTPRAQ 348
Query: 228 NSAESALDKPERAP 241
N + K R P
Sbjct: 349 NKFPKKIPKTPRGP 390
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.311 0.130 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,026,472
Number of Sequences: 63676
Number of extensions: 296523
Number of successful extensions: 1453
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of query: 746
length of database: 12,639,632
effective HSP length: 104
effective length of query: 642
effective length of database: 6,017,328
effective search space: 3863124576
effective search space used: 3863124576
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0166.9