BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0166.4
(721 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC207472 similar to GB|AAO42856.1|28416651|BT004610 At4g18070 {A... 45 1e-04
TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, pa... 41 0.002
TC220974 similar to UP|MP62_LYTPI (P91753) Mitotic apparatus pro... 39 0.011
TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety... 38 0.014
TC218783 similar to UP|Q40363 (Q40363) NuM1 protein, partial (19%) 38 0.018
TC216150 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, ... 35 0.089
TC214054 similar to UP|Q75QC2 (Q75QC2) Glutamate-rich protein, p... 34 0.26
TC210062 GT-2 factor [Glycine max] 34 0.26
BF070369 33 0.34
TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety... 33 0.34
TC218770 UP|Q9XIU5 (Q9XIU5) GmMYB29B2 protein, complete 33 0.44
TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1... 33 0.58
TC230554 similar to UP|Q9SX62 (Q9SX62) F11A17.16, partial (24%) 33 0.58
TC231237 weakly similar to GB|AAL69460.1|18491271|AY074644 At2g4... 32 0.99
BU761594 similar to GP|22654971|gb At1g80930/F23A5_23 {Arabidops... 32 0.99
TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C2... 32 0.99
TC217017 32 0.99
TC219510 UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase HD2-P3... 32 0.99
TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%) 32 0.99
TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated anti... 31 1.7
>TC207472 similar to GB|AAO42856.1|28416651|BT004610 At4g18070 {Arabidopsis
thaliana;} , partial (18%)
Length = 1361
Score = 45.1 bits (105), Expect = 1e-04
Identities = 55/283 (19%), Positives = 108/283 (37%), Gaps = 25/283 (8%)
Frame = +3
Query: 230 MPTRRSKKTTSKPSDPKGKEILIEEPKRKKAASNEETEDDD-------VPLDKRRKVIFE 282
MP+ K+ +K K EI P N+E + D P + F
Sbjct: 210 MPSGAKKRKAAKKKKEKETEINTNHPSTTNPQGNDEVKSQDEKGSDGGSPTHGEHDLAFN 389
Query: 283 EEDEQDDHEIIQNVLQVIRESSEAEESTDSDEVPLVKRRKLPLKG----------PLQQK 332
EE+E+ D Q S A S D +EVP R +G ++ +
Sbjct: 390 EEEEERDPSAAQ-------PSHAAAASKDFEEVPGDANRIDETEGGKEGIVVIEWDMKSE 548
Query: 333 EADSQQASDPASEAQRE-----RRSKSTSDPARAAQLTRTTSIRSPSKVITESINSDSAL 387
++S+ S E+ +E S+S + ++ ++++ S+N A
Sbjct: 549 GSESKDVSVGHVESAKESDNGNANGNSSSSSSSSSSSDEIGTLKNSKDESHNSVNETVAF 728
Query: 388 VVIPEQPLHISTSMPTLTQTAATQPETQAETPDLSFTSLENTATSRQRQVTISEAEHMDE 447
+ + + M ++T+ + ET DL E++A + + ++ E + +D
Sbjct: 729 DELVKSMDSLHAKMASITENVLAE-----ETGDL---VAESSAAPVKAEASVPEVQSVDN 884
Query: 448 SDHSGIEKDHEIDSIHSEQTRP---DSSNASSSNATRTPQPVL 487
D D + +I E+ +P DS ++S + + P+ ++
Sbjct: 885 DDKEHSSFDENVRTISLEEPKPREFDSEVSASVSQSPIPESII 1013
>TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (41%)
Length = 2064
Score = 41.2 bits (95), Expect = 0.002
Identities = 54/258 (20%), Positives = 98/258 (37%), Gaps = 4/258 (1%)
Frame = +1
Query: 193 KKDNPASILEYVRMLRRNGDKITLEEFV----RTLPESPPEMPTRRSKKTTSKPSDPKGK 248
K++ A +LE++ D + ++ RT P + P S +T +K K
Sbjct: 847 KEELSAKLLEFLESPHATTDILLADKEQKGKKRTRKSVPSKSPGEASTETPAK------K 1008
Query: 249 EILIEEPKRKKAASNEETEDDDVPLDKRRKVIFEEEDEQDDHEIIQNVLQVIRESSEAEE 308
+ + +K+ S+++ EDD L + V E+ED + V S+ EE
Sbjct: 1009 QKQTSQSGKKQKQSSDDDEDDKAELSDAKGVSQEDED-----------VAVPNNESDDEE 1155
Query: 309 STDSDEVPLVKRRKLPLKGPLQQKEADSQQASDPASEAQRERRSKSTSDPARAAQLTRTT 368
S +E K RK S++A +S ++ +R S P + A+ T
Sbjct: 1156 SRSEEEEEKSKSRK-----------RTSKKAVKESSVSKADRTSSVKKTPVKDAKSIEKT 1302
Query: 369 SIRSPSKVITESINSDSALVVIPEQPLHISTSMPTLTQTAATQPETQAETPDLSFTSLEN 428
+ SK +S SA V +QP + Q + ++ T S +++
Sbjct: 1303 KKKPTSKKGVAEHDSASASVSKSKQPASKKQKTASEKQDTKGKAASKKRTDKSSKALVKD 1482
Query: 429 TATSRQRQVTISEAEHMD 446
S+ + +E D
Sbjct: 1483 QGKSKSNKKAKAEPTKQD 1536
>TC220974 similar to UP|MP62_LYTPI (P91753) Mitotic apparatus protein p62,
partial (7%)
Length = 436
Score = 38.5 bits (88), Expect = 0.011
Identities = 33/132 (25%), Positives = 58/132 (43%)
Frame = +1
Query: 218 EFVRTLPESPPEMPTRRSKKTTSKPSDPKGKEILIEEPKRKKAASNEETEDDDVPLDKRR 277
+F T+ + P+ + T+ SD + +E ++P +K N+E ED++V +
Sbjct: 46 KFNFTMAQKQKLRPSPLDEPPTASSSDSEEEEPQQQQPSSQK---NKEEEDEEVSSGEE- 213
Query: 278 KVIFEEEDEQDDHEIIQNVLQVIRESSEAEESTDSDEVPLVKRRKLPLKGPLQQKEADSQ 337
EEEDE+++ S E EE D P+ K P P Q + + S+
Sbjct: 214 ----EEEDEEEEE---------AASSEEEEEDEDLPPPPVSKNPPPPPANP-QPQHSSSE 351
Query: 338 QASDPASEAQRE 349
++ SE + E
Sbjct: 352 SETESGSETESE 387
>TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (24%)
Length = 808
Score = 38.1 bits (87), Expect = 0.014
Identities = 37/150 (24%), Positives = 63/150 (41%), Gaps = 3/150 (2%)
Frame = +1
Query: 229 EMPTRRSKKTTSKPSDPKGKEILIEEPKRKKAASNEETEDDDVPLDKRRKVIFEEEDEQD 288
E+ SKK +K S K++ I EPK+ NEE DDD E++D
Sbjct: 85 ELKVPESKKAVAKAS-ASAKQVKIVEPKK----DNEEDSDDDSD---------EDDDFGS 222
Query: 289 DHEIIQNVLQVIRESSEAEESTDSDEVPLVKRRKLPLKGP---LQQKEADSQQASDPASE 345
E +++ + S+ +E D + P K+ L K P + S++A + E
Sbjct: 223 SDEEMEDADSDSDDESDDKEDDDEETHPKNKKADLGKKRPNESASKTPVSSKKAKNATPE 402
Query: 346 AQRERRSKSTSDPARAAQLTRTTSIRSPSK 375
++ T+ P A + +T S + +K
Sbjct: 403 KTDGKKGGHTATPHPAKKGGKTPSSEAKAK 492
>TC218783 similar to UP|Q40363 (Q40363) NuM1 protein, partial (19%)
Length = 870
Score = 37.7 bits (86), Expect = 0.018
Identities = 46/238 (19%), Positives = 104/238 (43%), Gaps = 5/238 (2%)
Frame = +3
Query: 252 IEEPKRKKAASNEETEDDDVPLDKRRKVIFEEEDEQDDHEIIQNVLQVIRE--SSEAEES 309
++ K K+ +S++++ D KV +++ + + + + + SS + ES
Sbjct: 42 VKVQKGKEESSSDDSSSDSEDEKPAAKVAVPSKNQSAKNGTLSTLAKKGKPAASSSSSES 221
Query: 310 TD--SDEVPLVKRRKLPLKGPLQQKEADSQQASDPASEAQRERRSKSTSDPARAAQLTRT 367
+D SDE K + P G Q S+ + + S S+SD ++ + +
Sbjct: 222 SDDNSDEDEAPKTKVAPAAGKNGHASTKKTQPSESSDSDSSD--SDSSSDEGKSKK--KP 389
Query: 368 TSIRSPSKVITESINSDSALVVIPEQPLHISTSMPTLTQTAATQPETQAETPDLSFTSLE 427
T+ + P+ + + +S+ E + + P +T A ++P +A+ S S +
Sbjct: 390 TTAKLPTLPVAPAKKVESSDDESSESSDEDNDAKPAVT--AVSKPSARAQKKVESSDSDD 563
Query: 428 NTATSRQRQVTISEAEHM-DESDHSGIEKDHEIDSIHSEQTRPDSSNASSSNATRTPQ 484
+++ + ++ I + + DES+ +K + S+ + DS + S ++TPQ
Sbjct: 564 SSSDEDKGKMDIDDDDDSSDESEEPQKKKAVKNSKESSDSSEEDSEDESEEKPSKTPQ 737
>TC216150 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, partial (5%)
Length = 928
Score = 35.4 bits (80), Expect = 0.089
Identities = 21/74 (28%), Positives = 37/74 (49%)
Frame = +3
Query: 218 EFVRTLPESPPEMPTRRSKKTTSKPSDPKGKEILIEEPKRKKAASNEETEDDDVPLDKRR 277
+ V P PE KK K +PK +E EEPK++ A EE + ++ ++ +
Sbjct: 354 DIVSVGPAKEPE------KKEEPKKEEPKKEEEKKEEPKKEGEAKKEEEKKEEPKKEEEK 515
Query: 278 KVIFEEEDEQDDHE 291
K ++E+E+ + E
Sbjct: 516 KEETKKEEEKKEEE 557
>TC214054 similar to UP|Q75QC2 (Q75QC2) Glutamate-rich protein, partial (68%)
Length = 1306
Score = 33.9 bits (76), Expect = 0.26
Identities = 30/135 (22%), Positives = 53/135 (39%)
Frame = +1
Query: 224 PESPPEMPTRRSKKTTSKPSDPKGKEILIEEPKRKKAASNEETEDDDVPLDKRRKVIFEE 283
PES E P + + ++ + E+ EEPK +VP++ V E
Sbjct: 262 PESTTEAPKEETTEAPTETVEKTTTEVAPEEPK-------------EVPVETEEVVAKET 402
Query: 284 EDEQDDHEIIQNVLQVIRESSEAEESTDSDEVPLVKRRKLPLKGPLQQKEADSQQASDPA 343
E+E+ E + + ++E EAEE P + E +S A+ PA
Sbjct: 403 EEEKPAEEKSEEKTEEVKE--EAEE-------------------PKETTETESAAAAPPA 519
Query: 344 SEAQRERRSKSTSDP 358
+ + + ++S P
Sbjct: 520 TTEEENKPAESVETP 564
Score = 33.1 bits (74), Expect = 0.44
Identities = 24/110 (21%), Positives = 51/110 (45%)
Frame = +1
Query: 225 ESPPEMPTRRSKKTTSKPSDPKGKEILIEEPKRKKAASNEETEDDDVPLDKRRKVIFEEE 284
E E PT +KTT++ + + KE+ +E + + EE ++ +K +V E E
Sbjct: 289 EETTEAPTETVEKTTTEVAPEEPKEVPVETEEVVAKETEEEKPAEEKSEEKTEEVKEEAE 468
Query: 285 DEQDDHEIIQNVLQVIRESSEAEESTDSDEVPLVKRRKLPLKGPLQQKEA 334
+ ++ E ++ A +T +E + + P++ P+++ EA
Sbjct: 469 EPKETTE--------TESAAAAPPATTEEENKPAESVETPVEVPVEKTEA 594
>TC210062 GT-2 factor [Glycine max]
Length = 712
Score = 33.9 bits (76), Expect = 0.26
Identities = 42/205 (20%), Positives = 81/205 (39%), Gaps = 17/205 (8%)
Frame = +3
Query: 222 TLPESPPEMPT---------------RRSKKTTSKPSDPKGKEILIEEPKRKKAASNEET 266
T+P PP PT T + PS P L+ + S+EET
Sbjct: 123 TIPSFPPSNPTTYFPTQTPNPTSNNNNNPPSTITPPSFPNFPADLLSNSS-SSSTSSEET 299
Query: 267 EDDDVPLDKRRKVIFEEEDEQDDHEIIQNVLQVIRESSEAEESTDSDEVPLVKRRKLPLK 326
+ ++RK +++ E+ E+I+ ++ R EA E + + V + ++
Sbjct: 300 PTTEAR-GRKRKRKWKDFFERLMKEVIEKQEELQRRFLEAIEKREQERVVREEAWRMQ-- 470
Query: 327 GPLQQKEADSQQASDPASEAQRERRSKSTSDPARAAQLTRTTSIRSPSKVITESI--NSD 384
+ Q+ + +ER + D A L + + + E N++
Sbjct: 471 --------EMQRINREREILAQERSIAAAKDAAVMTFLQKIAEHQQQETINLEPALNNNN 626
Query: 385 SALVVIPEQPLHISTSMPTLTQTAA 409
+++ V+P+QP+ +T+ PT T A
Sbjct: 627 NSITVVPQQPVPQTTTTPTPTPQQA 701
>BF070369
Length = 413
Score = 33.5 bits (75), Expect = 0.34
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Frame = +2
Query: 252 IEEPKRKKAASNEETEDDDVPLDKRRKVIFEEEDEQDDHEI-----IQNVLQVIRESSEA 306
IEE + +S E + ++ + +RK+I E +EQ E+ +++ ++ + A
Sbjct: 68 IEEENPESLSSPEHGTEKNMNMMIKRKIITYESNEQPQVEVCPTPFADSLVSIVPQEENA 247
Query: 307 EESTDS-DEVPLVKRRKLPLKGPLQQKEADSQQASDPASEAQRERRSKSTSD 357
E ST + + P K++K ++G Q + D + +E ++ SD
Sbjct: 248 ETSTQNPNPPPRKKKKKNSVQGAEQVQTLDPSILLGVEPDVTKEEGAQQASD 403
>TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (63%)
Length = 1144
Score = 33.5 bits (75), Expect = 0.34
Identities = 40/182 (21%), Positives = 75/182 (40%), Gaps = 18/182 (9%)
Frame = +3
Query: 224 PESPPE-MPTRRSKKTTSKPSDPKGKEILIEEPKR-KKAASNEETEDDDVPLDKRRKVIF 281
PE+ E + SKK +K S K++ + EPK+ + S+++++DDD
Sbjct: 438 PETKAEDLKVPESKKAVAKASG-SAKQVKVVEPKKDNEEDSDDDSDDDDFGSSDEE---M 605
Query: 282 EEEDEQDDHEIIQNVLQVIRESSEAEESTDSDEVPLVKRR--KLPLKGPLQQKEA----- 334
E+ D D E + +E T +V L K+R + K P+ K+A
Sbjct: 606 EDADSDSDDE---------SGDEDDDEETPPKKVDLGKKRPNESASKTPVSSKKAKNATP 758
Query: 335 ---DSQQASDPASEAQRERRSKSTSDPARAAQLTRTTSIRSPS------KVITESINSDS 385
D ++ A+ ++ K+ + A+A ++P K ++S ++S
Sbjct: 759 EKTDGKKGGHTATPHPAKKGGKTPNSEAKAKTPNSEAKAKTPKSGGLSCKTCSKSFTNES 938
Query: 386 AL 387
L
Sbjct: 939 GL 944
>TC218770 UP|Q9XIU5 (Q9XIU5) GmMYB29B2 protein, complete
Length = 1316
Score = 33.1 bits (74), Expect = 0.44
Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 3/175 (1%)
Frame = +1
Query: 280 IFEEEDEQDDHEIIQNVLQVIRESSEAEESTDSDEVPLVKRRKLPLKGPLQQKEADSQQA 339
I EEE HE++ N I + V +K LK Q + S++A
Sbjct: 325 IEEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTNLKKRLLKS--DQSKPSSKRA 498
Query: 340 SDPASEAQRERRSKST-SDPA--RAAQLTRTTSIRSPSKVITESINSDSALVVIPEQPLH 396
+ P + S T S+PA R ++ T++ + S S+ + +I + +
Sbjct: 499 TKPKIKRSDSNSSIITQSEPAHLRFREMDTTSTACNTSSSDFSSVTVGDSKNIIKSEDIE 678
Query: 397 ISTSMPTLTQTAATQPETQAETPDLSFTSLENTATSRQRQVTISEAEHMDESDHS 451
+MP + ++ ++ ETP +S SL + Q + E + H+
Sbjct: 679 SMETMPVIDESFWSEAAIDDETPTMSSQSLITISNDMPLQYPFANYEETFQQSHA 843
>TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(70%)
Length = 2075
Score = 32.7 bits (73), Expect = 0.58
Identities = 26/132 (19%), Positives = 56/132 (41%), Gaps = 5/132 (3%)
Frame = +2
Query: 231 PTRRSKKTTSKPSDPKGKEILIEEPKRKKAASNEETEDDDVPLDKRRKVIFEEEDEQDDH 290
P R +K K S + ++PK + E +++V ++ + + EEE+E+++
Sbjct: 26 PMGRKRKVAPKSSLSTEPPLKQQQPKPENPPQEYEEVEEEVEEEEVEEEVEEEEEEEEED 205
Query: 291 EIIQNVLQVIRESSEA-----EESTDSDEVPLVKRRKLPLKGPLQQKEADSQQASDPASE 345
E + + E ++ ++ D D++P+ K L PL + + + A
Sbjct: 206 EEEEEEEEEEEEENDVVKQQQQQQQDEDDIPISK-----LLEPLGKDQLLNLLCDAAAKH 370
Query: 346 AQRERRSKSTSD 357
E R + +D
Sbjct: 371 RDVEERIRKAAD 406
>TC230554 similar to UP|Q9SX62 (Q9SX62) F11A17.16, partial (24%)
Length = 1106
Score = 32.7 bits (73), Expect = 0.58
Identities = 63/291 (21%), Positives = 107/291 (36%), Gaps = 37/291 (12%)
Frame = +2
Query: 224 PESPPEMPTRRSKKTTSKPSDP----------------------KGKEILIEEPKRKKAA 261
P+SPPE+ R S +T S P + K +++ P+R+
Sbjct: 41 PKSPPEIVNRESISSTRAKSVPPDLKNVSRAKRGVVVNKPKLNEEAKVVVVARPRRRVGD 220
Query: 262 SNEETEDDDVPLDKRRKVIFEE-EDEQDDHEIIQNVLQVIRESSEAEESTDSDEVPLVKR 320
+ + +DD P K++K + E+ E ++ + +Q+ + +RE + +S + + ++
Sbjct: 221 FDLQKNEDDDPDGKKKKELQEKLEVSENLIKSLQSEVLALREELDRVKSLNVE----LES 388
Query: 321 RKLPLKGPLQQKEAD------SQQASDPASEAQRERRSKSTSDPARAAQLTRTTSIRSPS 374
R L L EA P E Q + A + +R +P
Sbjct: 389 RNTKLTQNLAAAEAKISTVDIGNNGKGPIGEHQSPKFKDIQKLIAEKLERSRVKKEGTPE 568
Query: 375 KVITE-SINSDSALVVIPEQPLHISTSMPTLTQTAATQPETQAETPDLSFTSLEN----- 428
+ + SI++ + IPE I P T P T S T L+
Sbjct: 569 IIFAKASISAPTPSYAIPE-TTSIGRKSPPNTCLQPPPPVTSVGRKSPSNTCLQPPPPPP 745
Query: 429 -TATSRQRQVTISEAEHMDESDHSGIEKDHEIDSIHS-EQTRPDSSNASSS 477
R ++ + E HS KD +IDS S RP +A SS
Sbjct: 746 IPTRPLARLANSQKSPAIVELFHSLKNKDWKIDSKGSVNHQRPVVISAHSS 898
>TC231237 weakly similar to GB|AAL69460.1|18491271|AY074644
At2g41330/F13H10.12 {Arabidopsis thaliana;} , partial
(24%)
Length = 583
Score = 32.0 bits (71), Expect = 0.99
Identities = 31/134 (23%), Positives = 53/134 (39%)
Frame = +2
Query: 297 LQVIRESSEAEESTDSDEVPLVKRRKLPLKGPLQQKEADSQQASDPASEAQRERRSKSTS 356
L+ +R SS A S P P S S P++ + + + S
Sbjct: 44 LRNLRLSSAASGSPPPCSAPGAPHAPPPPPHSRPASTRVSSSTSPPSASSAAPSTTAAPS 223
Query: 357 DPARAAQLTRTTSIRSPSKVITESINSDSALVVIPEQPLHISTSMPTLTQTAATQPETQA 416
DP+ AA + +TS SPS + + ++ S+ P +S+S T+A + +
Sbjct: 224 DPSSAASASPSTSATSPSTTASATSSTPSS-AAAATSPCRVSSS---AASTSAAPTTSAS 391
Query: 417 ETPDLSFTSLENTA 430
T S T+ N +
Sbjct: 392 STRAASSTASSNAS 433
>BU761594 similar to GP|22654971|gb At1g80930/F23A5_23 {Arabidopsis
thaliana}, partial (13%)
Length = 397
Score = 32.0 bits (71), Expect = 0.99
Identities = 24/87 (27%), Positives = 41/87 (46%), Gaps = 4/87 (4%)
Frame = +1
Query: 252 IEEPKR----KKAASNEETEDDDVPLDKRRKVIFEEEDEQDDHEIIQNVLQVIRESSEAE 307
+E KR KK+ EE+EDD+ LD +E+DE D+ E E + +
Sbjct: 139 LENEKRYEELKKSMLGEESEDDEEGLDSESDDDDDEDDESDEEE---------EEQMQIK 291
Query: 308 ESTDSDEVPLVKRRKLPLKGPLQQKEA 334
+ T+++ V L + L + + +EA
Sbjct: 292 DETETNLVNLRRTIYLTIMSSVDFEEA 372
>TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23), partial
(7%)
Length = 735
Score = 32.0 bits (71), Expect = 0.99
Identities = 23/96 (23%), Positives = 34/96 (34%)
Frame = +3
Query: 263 NEETEDDDVPLDKRRKVIFEEEDEQDDHEIIQNVLQVIRESSEAEESTDSDEVPLVKRRK 322
N ETEDDD D+ + +++D+ +D E E +E D ++ P
Sbjct: 327 NSETEDDDKDGDEDDEDGHDQDDDGEDEEF---------SGEEGDEEGDPEDDPEANGGG 479
Query: 323 LPLKGPLQQKEADSQQASDPASEAQRERRSKSTSDP 358
E D D E E + TS P
Sbjct: 480 SDDDDDDNDNEEDDDDGEDEEEEEDEEEDEEETSQP 587
>TC217017
Length = 1946
Score = 32.0 bits (71), Expect = 0.99
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +3
Query: 550 QLSREKRLRVHDASERAYEQRRRVLHRVCAPLRRAMAERQYVVSECTSEDAEMIPAEAAE 609
Q REK L+ + +E A E+ RR+ RR + E Q + ++ +++ + P +++
Sbjct: 1236 QADREKELKAMEEAEAAREEERRIAEE----SRRKLQEEQELETKLAAKEVSLPPEPSSD 1403
Query: 610 DNS 612
D++
Sbjct: 1404 DDN 1412
>TC219510 UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase HD2-P39, complete
Length = 1196
Score = 32.0 bits (71), Expect = 0.99
Identities = 39/191 (20%), Positives = 71/191 (36%), Gaps = 1/191 (0%)
Frame = +3
Query: 228 PEMPTRRSKKTTSKPSDPK-GKEILIEEPKRKKAASNEETEDDDVPLDKRRKVIFEEEDE 286
PE+ +K T S PK G +PK+ + +++ DDD + E++
Sbjct: 441 PELKAEGAKVTKPSKSIPKIGAPAKAADPKKDEDDDSDDESDDD---------LAGEDES 593
Query: 287 QDDHEIIQNVLQVIRESSEAEESTDSDEVPLVKRRKLPLKGPLQQKEADSQQASDPASEA 346
HE+ + +SE E D +E P K G Q+ + A P S
Sbjct: 594 GSSHEMDDD------SNSEEESDGDDEETPAKK------GGSGQEXDPMESAAKTPISAK 737
Query: 347 QRERRSKSTSDPARAAQLTRTTSIRSPSKVITESINSDSALVVIPEQPLHISTSMPTLTQ 406
+ + + +D ++ + + PSK ++ NS L ++ + T
Sbjct: 738 KAKTATPEKTDGKKSVHV----ATPHPSKKGGKTPNSTKGQTPNSAGQLSCASCKKSFTN 905
Query: 407 TAATQPETQAE 417
A Q +A+
Sbjct: 906 EAGLQQHKKAK 938
>TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%)
Length = 1005
Score = 32.0 bits (71), Expect = 0.99
Identities = 25/125 (20%), Positives = 53/125 (42%)
Frame = +3
Query: 233 RRSKKTTSKPSDPKGKEILIEEPKRKKAASNEETEDDDVPLDKRRKVIFEEEDEQDDHEI 292
++ KK K + K+ E K+ N+E EDD+ K++ ++++++ DH+
Sbjct: 363 KKEKKDKEKEKKKEKKDKDEETDTLKEKGKNDEGEDDEGNKKKKK----DKKEKEKDHK- 527
Query: 293 IQNVLQVIRESSEAEESTDSDEVPLVKRRKLPLKGPLQQKEADSQQASDPASEAQRERRS 352
+E + EE D V R + ++ +KE + + + +E++
Sbjct: 528 --------KEKKDKEEGEKEDSKVEVSVRDIDIEE--IKKEGEKEDKGKDGGKEVKEKKK 677
Query: 353 KSTSD 357
K D
Sbjct: 678 KEDKD 692
>TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated antigen, partial
(7%)
Length = 466
Score = 31.2 bits (69), Expect = 1.7
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +1
Query: 253 EEPKRKKAASNEETEDDDVPLDKRRKVIFEEEDEQDDHEIIQNVLQVIRESSEAEESTDS 312
EE + K+ EE E+++ ++ EEE+++++ E NVL +I E E +
Sbjct: 25 EEEEEKEEEEEEEEEEEEEEEEEE-----EEEEKEEEEEEEGNVLVIIDEDKHDTEELNK 189
Query: 313 DEVPLVKRRK 322
+KR K
Sbjct: 190 KCEDFIKRMK 219
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.311 0.127 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,208,928
Number of Sequences: 63676
Number of extensions: 294008
Number of successful extensions: 2014
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 1963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1999
length of query: 721
length of database: 12,639,632
effective HSP length: 104
effective length of query: 617
effective length of database: 6,017,328
effective search space: 3712691376
effective search space used: 3712691376
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0166.4