BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0166.12
(1518 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 1047 0.0
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 1025 0.0
NP004897 gag-protease polyprotein 379 e-122
TC213445 115 2e-42
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 149 9e-36
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 136 6e-32
TC232995 127 3e-29
CO982036 124 2e-28
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 119 1e-26
BG508993 116 9e-26
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 112 9e-25
BU549979 110 5e-24
BI321712 110 6e-24
CO983516 78 8e-24
AW185460 108 2e-23
BE609922 similar to GP|29423273|g gag-pol polyprotein {Glycine m... 103 6e-22
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 102 1e-21
TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (F... 98 3e-20
BU548243 97 5e-20
BI425121 96 9e-20
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 1047 bits (2707), Expect(4) = 0.0
Identities = 544/958 (56%), Positives = 697/958 (71%), Gaps = 13/958 (1%)
Frame = +1
Query: 145 QKILRSLPKKFDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDKKSKSIAFVSNT 204
+KILRSLPK+FDMKVTAIEEAQDI +++VDELIGSLQTFE+ +++R++KKSK++AFVSN
Sbjct: 517 RKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSND 696
Query: 205 E-DDDASEKDSDENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFARRKKE 263
E ++D + D+DE L+ A+ +LG++FNKV+ R +RR +P+V + DI K S++ +KK
Sbjct: 697 EGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEY--QKKS 870
Query: 264 EDKYNKSKGVQCHECEGYEHIKAECATYLKKLGKGMVATWSDDDTGEED---EPQVMRLT 320
++K + SKG+QCH CEGY HIKAEC T+LKK KG+ SDD E++ + V LT
Sbjct: 871 DEKPSHSKGIQCHGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALT 1050
Query: 321 VKCNSGS*SSD--GEISEEELAETYKLLFNNWKDACEKGMKLEGVVKNLEVEKQNFLILN 378
+ S SSD EI+ +ELA +Y+ L + ++ +L+ V+ NLE EK+
Sbjct: 1051 GRFESAEDSSDTDSEITFDELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEI 1230
Query: 379 GSLQEEVTVLKSKIEGMIKYVRMLNNGTDVFDLILEIG*VAKDMTGLGYTEDPTTEENRK 438
L+ EV L SK+E M K ++MLN G+D+ D +L++G + GLG+ R
Sbjct: 1231 SELKGEVGFLNSKLENMTKSIKMLNKGSDMLDEVLQLGKNVGNQRGLGFNHKSA---GRT 1401
Query: 439 ISNKFIPAEKKTEFKMSNRMSQHVAQQGYQQIPYSYPPTQIMRSTTWKCHHCGKHGHIRP 498
+F+PA+ T MS S+H G QQ + + W+CH+CGK+GHI+P
Sbjct: 1402 TMTEFVPAKNSTGATMSQHRSRH---HGTQQ--------KKSKRKKWRCHYCGKYGHIKP 1548
Query: 499 YCYRLYGTPQHWRTTQMHTSTNPKIREWKPKNIVTALVAYTSLRASSKEDWYFDSGCSRH 558
+CY L+G P H +S++ + W PK+ + +LV +TSLRAS+KEDWY DSGCSRH
Sbjct: 1549 FCYHLHGHPHHGT----QSSSSGRKMMWVPKHKIVSLVVHTSLRASAKEDWYLDSGCSRH 1716
Query: 559 MNSVKMYLDNIKPHSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLLVEGLTANLISIS 618
M VK +L NI+P STS+VTFGDG+KG+I G K+V G P+L+ VLLV+GLTANLISIS
Sbjct: 1717 MTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISIS 1896
Query: 619 QLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSSMCLVSMEDEAKL 678
QLCD NV+ K+ C VTNE EV+M G RSKDNCY+W+PQ + SS CL S EDE K+
Sbjct: 1897 QLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLFSKEDEVKI 2076
Query: 679 WHQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKTSHKKLTQIGTTRS 738
WHQ+ GHL+ MKK+I K A+RGIP LKIEE ++CGECQIGKQ K SH+KL T+R
Sbjct: 2077 WHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRV 2256
Query: 739 LQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEK 798
L+LLHMDLMGPM ES GGKRY +V VDDFSRFTWVNF+ EKS+TFEVF+ELS +LQ EK
Sbjct: 2257 LELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREK 2436
Query: 799 GYGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVML 858
I +IRSDHG+EFEN KF+E+C +EGI HEFSA ITPQQNG+VERKNRTLQE+ARVML
Sbjct: 2437 DCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVML 2616
Query: 859 HAKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVKYFYVFESRCYILTD 918
HAK++PY+LWAEA+NTACYIH RVT+R GT +TLYE+WKG+KPTVK+F++F S CYIL D
Sbjct: 2617 HAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILAD 2796
Query: 919 REQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVVVDDMVSSLNEINVDGD- 977
REQRRK+DPKSD G+FLGYS NS+AYRVFNSRT+T+MESINVVVDD+ + + +V+ D
Sbjct: 2797 REQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARKK-DVEEDV 2973
Query: 978 ----DNVPQIVDERPNDCDIRSDTEPEEEKEQESSKEIVPSIRIQKMHLKENIIGNLNEG 1033
DNV N SD+ +E + K PSIRIQKMH KE IIG+ N G
Sbjct: 2974 RTSGDNVADTAKSAEN--AENSDSATDEPNINQPDKR--PSIRIQKMHPKELIIGDPNRG 3141
Query: 1034 VVTRSR--DIIANACFISKIEPKNIKEALTDEYWINAMQEELSQFKRNEVWDLVPRPE 1089
V TRSR +I++N+CF+SKIEPKN+KEALTDE+WINAMQEEL QFKRNEVW+LVPRPE
Sbjct: 3142 VTTRSREIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPE 3315
Score = 484 bits (1246), Expect(4) = 0.0
Identities = 230/299 (76%), Positives = 266/299 (88%)
Frame = +1
Query: 1220 YNKRGIDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNY 1279
Y K GIDKTLFVK D +MIAQIYVDDIVFGGMS+ M+ HFV+ M+SEFEMSLVGEL Y
Sbjct: 3712 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTY 3891
Query: 1280 FPGLQVKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLY 1339
F GLQVKQM+DSIF+SQSKYAK +VKKFG+E ++HKRTPA TH+KL+KDE+GT VDQSLY
Sbjct: 3892 FLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLY 4071
Query: 1340 RSMICSLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNS 1399
RSMI SLLYLTASRPDI +++ VCARYQA PK SHL VKRI+KY+NGT+DYG Y H S
Sbjct: 4072 RSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCS 4251
Query: 1400 NSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWC 1459
+S L+ YCDADWAG+ADD KSTSGGCF+LG NLISWF+KKQNCVSLST EAEYIAAGS C
Sbjct: 4252 DSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSC 4431
Query: 1460 TQLLWMKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEEK 1518
+QL+WMK ML+EYNV+QDVMTLYC+N+SAINISKNP+QHSRTKHIDIRHH+I+DLV++K
Sbjct: 4432 SQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDK 4608
Score = 111 bits (278), Expect(4) = 0.0
Identities = 73/128 (57%), Positives = 85/128 (66%)
Frame = +2
Query: 1088 PEVVM*LVPSGFSETSQMKVIL*QETRPD*LLKGILRLKELILMRPLLMLLDWNQSDCC* 1147
P +M*L PSG S T MK +L* ETRPD LLK LRLK LM+ +LLD + SDC
Sbjct: 3311 PRELM*LAPSGSSRTKPMKKVL*PETRPDLLLKATLRLKV*TLMKLSPLLLDLSPSDCYL 3490
Query: 1148 D*HAF*NSNCSRWM*RVLS*MDT*MRKSM*NNQRAL*IQPFQNMFTS*ERRYMD*SKSQG 1207
* A NS+C+RWM*R *MDT*M+K M ++QR L*IQ Q M+T R MD*SK Q
Sbjct: 3491 V*LASSNSSCTRWM*RARF*MDT*MKKPMWSSQRDL*IQLIQIMYTGSRRLSMD*SKLQE 3670
Query: 1208 LDMEG*QS 1215
L M+G*QS
Sbjct: 3671 LGMKG*QS 3694
Score = 76.3 bits (186), Expect(4) = 0.0
Identities = 46/124 (37%), Positives = 75/124 (60%)
Frame = +3
Query: 10 QDMKIHCQKVETSCEK*QRGNFNH*FEA*GRMDQGGR**SFSKLKSTECHLQWSGEEYVQ 69
Q+++ Q++ TS + R + * EA R+D+ R KL+S EC +QWS +EY+Q
Sbjct: 111 QNLESCHQRLGTSQDAGHRRKAH**IEARRRLDKRRRRIGTWKLQSLECSIQWS*QEYLQ 290
Query: 70 VDQYLHCG*GCLGNPQSCS*RHHKSKSVKTSTSYHSV*DSEDEGG*NCVRISHEGARYG* 129
DQ++H G GC+G+P++ S*R+ +S+ V+ +T + + SEDEGG + HE +
Sbjct: 291 TDQHMHSGQGCMGDPENHS*RNLQSEDVQIATIGYKIRKSEDEGGRVYS*LPHEHS*NCQ 470
Query: 130 CIIC 133
C+ C
Sbjct: 471 CLHC 482
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 1025 bits (2649), Expect(4) = 0.0
Identities = 537/957 (56%), Positives = 689/957 (71%), Gaps = 12/957 (1%)
Frame = +1
Query: 145 QKILRSLPKKFDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDKKSKSIAFVSNT 204
+KILRSLPK+FDMKVTAIEEAQDI +++VDELIGSLQTFE+ +++R++KKSK++AFVSN
Sbjct: 517 RKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSND 696
Query: 205 E-DDDASEKDSDENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFARRKKE 263
E ++D + D+DE L+ A+ +LG++FNKV+ R ++R +P+V + DI K S + +K+
Sbjct: 697 EGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKY--QKRS 870
Query: 264 EDKYNKSKGVQCHECEGYEHIKAECATYLKKLGKGMVATWSDDDTGEEDEPQ--VMRLTV 321
+ K + SKG+QCH CEGY HI AEC T+LKK KG+ SD ++ +E + V LT
Sbjct: 871 DVKPSHSKGIQCHGCEGYGHIIAECPTHLKKHRKGLSVCQSDTESEQESDSDRDVNALTG 1050
Query: 322 KCNSGS*SSD--GEISEEELAETYKLLFNNWKDACEKGMKLEGVVKNLEVEKQNFLILNG 379
+ SSD EI+ +ELA +Y+ L + ++ +L+ V+ +LE EK+
Sbjct: 1051 IFETAEDSSDTDSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEIS 1230
Query: 380 SLQEEVTVLKSKIEGMIKYVRMLNNGTDVFDLILEIG*VAKDMTGLGYTEDPTTEENRKI 439
L+ EV L SK+E M K ++MLN G+D D +L +G A + GLG+ R
Sbjct: 1231 ELKGEVGFLNSKLENMTKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKSA---GRTT 1401
Query: 440 SNKFIPAEKKTEFKMSNRMSQHVAQQGYQQIPYSYPPTQIMRSTTWKCHHCGKHGHIRPY 499
+F+PA+ +T MS S+H G QQ + + W+CH+CGK+GHI+P+
Sbjct: 1402 MTEFVPAKNRTGATMSQHRSRH---HGMQQ--------KKSKRKKWRCHYCGKYGHIKPF 1548
Query: 500 CYRLYGTPQHWRTTQMHTSTNPKIREWKPKNIVTALVAYTSLRASSKEDWYFDSGCSRHM 559
CY L+G P H +S + K W PK+ +LV +TSLRAS+KEDWY DSGCSRHM
Sbjct: 1549 CYHLHGHPHHGT----QSSNSRKKMMWVPKHKAVSLVVHTSLRASAKEDWYLDSGCSRHM 1716
Query: 560 NSVKMYLDNIKPHSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLLVEGLTANLISISQ 619
VK +L NI+P STS+VTFGDG+KG+I G K+V G P+L+ VLLV+GLTANLISISQ
Sbjct: 1717 TGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQ 1896
Query: 620 LCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSSMCLVSMEDEAKLW 679
LCD NV+ K+ C VTNE EV+M G RSKDNCY+W+PQ + SS CL S EDE ++W
Sbjct: 1897 LCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIW 2076
Query: 680 HQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKTSHKKLTQIGTTRSL 739
HQ+ GHL+ MKK+I K A+RGIP LKIEE ++CGECQIGKQ K SH+KL T+R L
Sbjct: 2077 HQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVL 2256
Query: 740 QLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEKG 799
+LLHMDLMGPM ES GGKRY +V VDDFSRFTWVNF+ EKSETFEVF+ELS +LQ EK
Sbjct: 2257 ELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKD 2436
Query: 800 YGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVMLH 859
I +IRSDHG+EFEN +F+E+C +EGI HEFSA ITPQQNG+VERKNRTLQE+ARVMLH
Sbjct: 2437 CVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLH 2616
Query: 860 AKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVKYFYVFESRCYILTDR 919
AK++PY+LWAEA+NTACYIH RVT+R GT +TLYE+WKG+KP+VK+F++F S CYIL DR
Sbjct: 2617 AKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADR 2796
Query: 920 EQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVVVDDMVSSLNEINVDGD-- 977
EQRRK+DPKSD G+FLGYS NS+AYRVFNSRT+T+MESINVVVDD+ S + +V+ D
Sbjct: 2797 EQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDL-SPARKKDVEEDVR 2973
Query: 978 ---DNVPQIVDERPNDCDIRSDTEPEEEKEQESSKEIVPSIRIQKMHLKENIIGNLNEGV 1034
DNV N SD+ +E + K S RIQKMH KE IIG+ N GV
Sbjct: 2974 TSGDNVADAAKSGEN--AENSDSATDESNINQPDKR--SSTRIQKMHPKELIIGDPNRGV 3141
Query: 1035 VTRSR--DIIANACFISKIEPKNIKEALTDEYWINAMQEELSQFKRNEVWDLVPRPE 1089
TRSR +I++N+CF+SKIEPKN+KEALTDE+WINAMQEEL QFKRNEVW+LVPRPE
Sbjct: 3142 TTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPE 3312
Score = 486 bits (1251), Expect(4) = 0.0
Identities = 230/299 (76%), Positives = 266/299 (88%)
Frame = +1
Query: 1220 YNKRGIDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNY 1279
Y K GIDKTLFVK D +MIAQIYVDDIVFGGMS+ M+ HFV+ M+SEFEMSLVGEL Y
Sbjct: 3709 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTY 3888
Query: 1280 FPGLQVKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLY 1339
F GLQVKQM+DSIF+SQS+YAK +VKKFG+E ++HKRTPA TH+KL+KDE+GT VDQSLY
Sbjct: 3889 FLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLY 4068
Query: 1340 RSMICSLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNS 1399
RSMI SLLYLTASRPDI +++ VCARYQA PK SHL VKRI+KY+NGT+DYG Y H S
Sbjct: 4069 RSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCS 4248
Query: 1400 NSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWC 1459
N L+ YCDADWAG+ADD KSTSGGCF+LGNNLISWF+KKQNCVSLST EAEYIAAGS C
Sbjct: 4249 NPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSC 4428
Query: 1460 TQLLWMKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEEK 1518
+QL+WMK ML+EYNV+QDVMTLYC+N+SAINISKNP+QHSRTKHIDIRHH+I+DLV++K
Sbjct: 4429 SQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDK 4605
Score = 100 bits (249), Expect(4) = 0.0
Identities = 69/125 (55%), Positives = 80/125 (63%)
Frame = +2
Query: 1091 VM*LVPSGFSETSQMKVIL*QETRPD*LLKGILRLKELILMRPLLMLLDWNQSDCC*D*H 1150
+M*L PSG S T MK + * ETRPD LLK LRLK LMR L LLD + SD *
Sbjct: 3317 LM*LAPSGSSRTKPMKKVS*PETRPDWLLKATLRLKV*TLMRLLPQLLDLSPSDYYLV*L 3496
Query: 1151 AF*NSNCSRWM*RVLS*MDT*MRKSM*NNQRAL*IQPFQNMFTS*ERRYMD*SKSQGLDM 1210
NS+C+RWM*R *MDT*M+KSM ++QR L + Q M+T R MD*SK Q L M
Sbjct: 3497 VSSNSSCTRWM*RAHF*MDT*MKKSMWSSQRDLQTRLIQIMYTGSRRLSMD*SKLQELGM 3676
Query: 1211 EG*QS 1215
+G*QS
Sbjct: 3677 KG*QS 3691
Score = 67.8 bits (164), Expect(4) = 0.0
Identities = 46/125 (36%), Positives = 77/125 (60%), Gaps = 1/125 (0%)
Frame = +3
Query: 10 QDMKIHCQKVETSCEK*QRGNFNH*FEA*GRMD-QGGR**SFSKLKSTECHLQWSGEEYV 68
Q+++ Q++ TS + R + * EA R+D + GR ++ KL+S EC +QWS +E++
Sbjct: 111 QNLESCHQRLGTSQDAGHRRKAH**IEARRRLD*RRGRIGTW-KLQSFECTIQWS*QEHL 287
Query: 69 QVDQYLHCG*GCLGNPQSCS*RHHKSKSVKTSTSYHSV*DSEDEGG*NCVRISHEGARYG 128
Q DQ+LH G C+G+P++ S*R+ +S+ V+ +T + + SEDEGG + HE +
Sbjct: 288 QTDQHLHSGQRCMGDPENHS*RNLQSEDVQIATLGYKIRKSEDEGGRVYS*LPHEHS*NC 467
Query: 129 *CIIC 133
C+ C
Sbjct: 468 QCLHC 482
>NP004897 gag-protease polyprotein
Length = 1923
Score = 379 bits (974), Expect(2) = e-122
Identities = 210/459 (45%), Positives = 299/459 (64%), Gaps = 6/459 (1%)
Frame = +1
Query: 145 QKILRSLPKKFDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDKKSKSIAFVSNT 204
+KILRSLPK+FDMKVTAIEEAQDI +++VDELIGSLQTFE+ +++R++KKSK++AFVSN
Sbjct: 517 RKILRSLPKRFDMKVTAIEEAQDICNLRVDELIGSLQTFELGLSDRTEKKSKNLAFVSND 696
Query: 205 E-DDDASEKDSDENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFARRKKE 263
E ++D + D+DE L+ A+ +LG++FNKV+ R +RR +P+V + DI K S++ +K+
Sbjct: 697 EGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEY--QKRS 870
Query: 264 EDKYNKSKGVQCHECEGYEHIKAECATYLKKLGKGMVATWSDDDTGEED---EPQVMRLT 320
++K + SKG QCH CEGY HIKAEC T+LKK KG+ SDD E++ + V LT
Sbjct: 871 DEKPSHSKGFQCHGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALT 1050
Query: 321 VKCNSGS*SSD--GEISEEELAETYKLLFNNWKDACEKGMKLEGVVKNLEVEKQNFLILN 378
+ S SSD EI+ +ELA +Y+ L + ++ +L+ V+ NLE EK+
Sbjct: 1051GRFESAEDSSDTDSEITFDELATSYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEI 1230
Query: 379 GSLQEEVTVLKSKIEGMIKYVRMLNNGTDVFDLILEIG*VAKDMTGLGYTEDPTTEENRK 438
L+ EV L SK+E M K ++MLN G+D+ D +L++G + GLG+ R
Sbjct: 1231SELKGEVGFLNSKLENMTKSIKMLNKGSDMLDEVLQLGKNVGNQRGLGFNHKSA---GRI 1401
Query: 439 ISNKFIPAEKKTEFKMSNRMSQHVAQQGYQQIPYSYPPTQIMRSTTWKCHHCGKHGHIRP 498
+F+PA+ T MS S+H G QQ + + W+CH+CGK+GHI+P
Sbjct: 1402TMTEFVPAKISTGATMSQHRSRH---HGTQQ--------KKSKRKKWRCHYCGKYGHIKP 1548
Query: 499 YCYRLYGTPQHWRTTQMHTSTNPKIREWKPKNIVTALVAYTSLRASSKEDWYFDSGCSRH 558
+CY L+G P H +S++ + W PK+ + +LV +TSLRAS+KEDWY DSGCSRH
Sbjct: 1549FCYHLHGHPHHGT----QSSSSRRKMMWVPKHKIVSLVVHTSLRASAKEDWYLDSGCSRH 1716
Query: 559 MNSVKMYLDNIKPHSTSFVTFGDGAKGRIKGSEKIVSGG 597
M VK +L NI+P STS+VTFGDG+KG+I G K+V G
Sbjct: 1717MTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDG 1833
Score = 80.1 bits (196), Expect(2) = e-122
Identities = 52/137 (37%), Positives = 80/137 (57%)
Frame = +3
Query: 10 QDMKIHCQKVETSCEK*QRGNFNH*FEA*GRMDQGGR**SFSKLKSTECHLQWSGEEYVQ 69
Q+++ Q++ TS + R + EA R+D R KL+S EC +QWS +EY+Q
Sbjct: 111 QNLESCHQRLGTSQDAGHRRKAH*WIEARRRLD*RRRRIGTWKLQSFECSIQWS*QEYLQ 290
Query: 70 VDQYLHCG*GCLGNPQSCS*RHHKSKSVKTSTSYHSV*DSEDEGG*NCVRISHEGARYG* 129
DQ++H G GC+G+P++ S*R+ +S+ V+ +T H + SEDEGG +SHE +
Sbjct: 291 TDQHMHSGQGCMGDPENHS*RNLQSEDVQIATIGHKIRKSEDEGGRVYS*LSHEHS*NCQ 470
Query: 130 CIICPWRTNV*GNASQK 146
C+ C R N * A +K
Sbjct: 471 CLHCLGRKND**KAGEK 521
>TC213445
Length = 705
Score = 115 bits (288), Expect(2) = 2e-42
Identities = 53/96 (55%), Positives = 72/96 (74%)
Frame = +1
Query: 1417 DGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWCTQLLWMKHMLREYNVKQ 1476
D +STS C F+G+ L+SW +KKQN V LST EAEYI+A S+ Q+ WM+ L +Y +K
Sbjct: 406 DRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGLKL 585
Query: 1477 DVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIK 1512
D + + C+N SAIN+SKN I +SRTKHI+IRHHF++
Sbjct: 586 DHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 77.8 bits (190), Expect(2) = 2e-42
Identities = 37/69 (53%), Positives = 49/69 (70%)
Frame = +2
Query: 1341 SMICSLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSN 1400
+MI S LYL+ SRP I FS+ +C RYQA PKESHL +KRI++Y+ G + G +Y NS+
Sbjct: 194 AMIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSS 373
Query: 1401 SNLISYCDA 1409
NL+ Y DA
Sbjct: 374 YNLVGYSDA 400
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 149 bits (376), Expect = 9e-36
Identities = 80/184 (43%), Positives = 110/184 (59%)
Frame = +3
Query: 1239 MIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQVKQMQDSIFISQSK 1298
+I IYVDDI+FG S M + F MK FE S+ GEL + GLQ+ Q IFI Q K
Sbjct: 489 LIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEK 668
Query: 1299 YAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLYRSMICSLLYLTASRPDIAF 1358
Y K +K+F ++ + TP + KDE G Y MI SL YLT+SRPDI F
Sbjct: 669 YTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVF 848
Query: 1359 SIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSNSNLISYCDADWAGNADDG 1418
+ +CAR+Q+ PK SH+ VKRI++Y+ GTT++ ++ S +L+ YCD +AG+ +
Sbjct: 849 VVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVER 1028
Query: 1419 KSTS 1422
KSTS
Sbjct: 1029 KSTS 1040
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 136 bits (343), Expect = 6e-32
Identities = 70/188 (37%), Positives = 115/188 (60%), Gaps = 4/188 (2%)
Frame = +1
Query: 1334 VDQSLYRSMICSLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGT 1393
VD + +R +I SL YL SRP+I F++ + +R+ P+ SH+ KR+++ I GT G
Sbjct: 7 VDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV 186
Query: 1394 ---FYAHNSNSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEA 1450
F A + +L+ Y D+DW + + KST G F + ++ +KKQ+ ++LST EA
Sbjct: 187 LFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEA 366
Query: 1451 EYIAAGSWCTQLLWMKHMLREYNVKQ-DVMTLYCENLSAINISKNPIQHSRTKHIDIRHH 1509
EY+AA Q +WM ++L E +++ + L +N SAIN++K+P H R+KHI++R H
Sbjct: 367 EYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFH 546
Query: 1510 FIKDLVEE 1517
+I+D V +
Sbjct: 547 YIRDQVSK 570
>TC232995
Length = 1009
Score = 127 bits (320), Expect = 3e-29
Identities = 60/124 (48%), Positives = 85/124 (68%)
Frame = +2
Query: 1220 YNKRGIDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNY 1279
+++ +D TLF+K +++ QIYVDDI+FG +D + + F M+SEFEMS++GEL Y
Sbjct: 137 FSRGKVDTTLFIKRKHNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKY 316
Query: 1280 FPGLQVKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLY 1339
F GLQ+KQ Q IFI+QSKY K L+K+FG++ + H TP +T+ L KDESG +D Y
Sbjct: 317 FLGLQIKQTQ*GIFINQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQY 496
Query: 1340 RSMI 1343
R I
Sbjct: 497 RDAI 508
>CO982036
Length = 674
Score = 124 bits (312), Expect = 2e-28
Identities = 69/201 (34%), Positives = 113/201 (55%), Gaps = 3/201 (1%)
Frame = -2
Query: 1243 IYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQVKQMQDSIFISQSKYAK* 1302
+YVD I+ G S ++++ + S F + L+G+L+YF ++VK M D +F ++ +
Sbjct: 640 VYVD-IIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDLLFSLRTSIFEI 464
Query: 1303 LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLYRSMICSLLYLTASRPDIAFSIDV 1362
+K + +P T KL+K +S + YRS++ +L Y T RP+I+F+++
Sbjct: 463 FCRKPR*QAQPIS-SPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISFAVNK 287
Query: 1363 CARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSNSN---LISYCDADWAGNADDGK 1419
++ + P +SH VKRI++Y+ G+ YG +S + +CDADWA DD +
Sbjct: 286 VCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASAVDDKR 107
Query: 1420 STSGGCFFLGNNLISWFNKKQ 1440
STSG FLG NLISW+ KQ
Sbjct: 106 STSGAAVFLGPNLISWWXXKQ 44
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 119 bits (297), Expect = 1e-26
Identities = 56/120 (46%), Positives = 81/120 (66%), Gaps = 1/120 (0%)
Frame = +2
Query: 1400 NSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWC 1459
N+ L YCDADWAG D +STSG C F+G NL+SW +KKQ V+ S+ EAEY +
Sbjct: 8 NTQLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVT 187
Query: 1460 TQLLWMKHMLREYNVKQDV-MTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEEK 1518
+L+W+K L+E +++ M LYC+N +A++I+ NP+ H RTKHI+I HFI++ + K
Sbjct: 188 CELMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSK 367
>BG508993
Length = 374
Score = 116 bits (290), Expect = 9e-26
Identities = 54/122 (44%), Positives = 82/122 (66%), Gaps = 1/122 (0%)
Frame = +1
Query: 1387 GTTDYGTFYAHNSNSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLS 1446
GT D+G FY+ ++N L+ +CD+D+AG+ DD KST+G FF+G+ + +W +KKQ V+L
Sbjct: 7 GTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTLF 186
Query: 1447 TTEAEYIAAGSWCTQLLWMKHMLREYNVKQDVMT-LYCENLSAINISKNPIQHSRTKHID 1505
T EAEY+AA S +W++ +L E + Q T +Y +N SA ++KN + H R+KHID
Sbjct: 187 TCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHID 366
Query: 1506 IR 1507
R
Sbjct: 367 TR 372
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 112 bits (281), Expect = 9e-25
Identities = 86/302 (28%), Positives = 145/302 (47%), Gaps = 10/302 (3%)
Frame = +2
Query: 576 FVTFGDGAKGRIKGSEKIVSGGSPNLSNVLLVEGLTANLISISQLCDLDLNVSSNKAGCT 635
F+T DG++ G + S +L++V+ + G N+ S+SQL + C+
Sbjct: 17 FITLADGSRVVATGIGHVSPTSSLSLNSVVFILGCPFNITSLSQL--------TRFRNCS 172
Query: 636 VTNENEEVVM----------TGVRSKDNCYMWSPQNKAMSSMCLVSMEDEAKLWHQK*GH 685
VT + V+ G+ S Y+ +S +C S KL H++ GH
Sbjct: 173 VTFDANSFVIQECGTGWTIGVGIESHGLYYL----KPNLSWVC--SAVTSPKLLHERLGH 334
Query: 686 LNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKTSHKKLTQIGTTRSLQLLHMD 745
+ + +K ++ P L+ +D C CQ+GK ++S + + + L ++H D
Sbjct: 335 PHLSKLKIMV--------PSLEKIKDLFCESCQLGKHVRSSXRHVESRVDSPFL-VIHXD 487
Query: 746 LMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEKGYGIVKI 805
+ GP S RY +D+FS+ T V + E+SE +++ ++ + G I +
Sbjct: 488 IWGPNRVSSMS-YRYFVTFIDEFSQCTRVFLMKERSEILSFLTSVNK-IKTQFGKTIKIL 661
Query: 806 RSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKKVPY 865
RSD+ KE+ + S + +GI H+FS P TPQQN + ERKNR L E+AR +L P
Sbjct: 662 RSDNAKEYFSSVISPFXSAQGILHQFSCPHTPQQNDIAERKNRHLVETARTLLLHANEPI 841
Query: 866 HL 867
H+
Sbjct: 842 HI 847
>BU549979
Length = 615
Score = 110 bits (275), Expect = 5e-24
Identities = 54/160 (33%), Positives = 91/160 (56%), Gaps = 3/160 (1%)
Frame = -1
Query: 1362 VCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSNSNLISYCDADWAGNADDGKST 1421
V RYQ+ P H K++++Y+ GT DY Y + +I Y D+D+AG D +ST
Sbjct: 615 VLGRYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRST 436
Query: 1422 SGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWCTQLLWMKHMLREYNVKQDV--- 1478
SG F L + ++SW + KQ ++ ST E E++ + +W+K + V +
Sbjct: 435 SGYIFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRP 256
Query: 1479 MTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEEK 1518
+ LYC+N +A+ ++KN +R+KHIDI++ I++ V+EK
Sbjct: 255 LKLYCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEK 136
>BI321712
Length = 399
Score = 110 bits (274), Expect = 6e-24
Identities = 55/124 (44%), Positives = 82/124 (65%)
Frame = -3
Query: 1243 IYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQVKQMQDSIFISQSKYAK* 1302
+YVDD++F G + M E F + M +EFEM+ +G + Y+ G++VKQ IFI+Q YAK
Sbjct: 379 LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200
Query: 1303 LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLYRSMICSLLYLTASRPDIAFSIDV 1362
++KKF ++ + TP KL+K E G +VD +LY+S+I SL YLT +RPDI + + V
Sbjct: 199 VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20
Query: 1363 CARY 1366
+RY
Sbjct: 19 VSRY 8
>CO983516
Length = 724
Score = 77.8 bits (190), Expect(2) = 8e-24
Identities = 48/88 (54%), Positives = 62/88 (69%)
Frame = +3
Query: 1129 ILMRPLLMLLDWNQSDCC*D*HAF*NSNCSRWM*RVLS*MDT*MRKSM*NNQRAL*IQPF 1188
+++R ++LLD + SDC * A NS+C+RWM*R *MDT*M+KSM ++QR L*IQ
Sbjct: 351 LVIRSSILLLDLSPSDCYLV*LASSNSSCTRWM*RARF*MDT*MKKSMWSSQRDL*IQLI 530
Query: 1189 QNMFTS*ERRYMD*SKSQGLDMEG*QSF 1216
Q M+T R MD*SK Q L M+G*QS+
Sbjct: 531 QIMYTGSRRLSMD*SKLQELGMKG*QSY 614
Score = 52.8 bits (125), Expect(2) = 8e-24
Identities = 25/32 (78%), Positives = 26/32 (81%)
Frame = +2
Query: 1220 YNKRGIDKTLFVKSDGGKVMIAQIYVDDIVFG 1251
Y K GIDKTLFVK D +MIAQIYVDDIVFG
Sbjct: 629 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFG 724
>AW185460
Length = 411
Score = 108 bits (269), Expect = 2e-23
Identities = 53/123 (43%), Positives = 78/123 (63%), Gaps = 2/123 (1%)
Frame = +2
Query: 1334 VDQSLYRSMICSLLYLT--ASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDY 1391
+D+ RS LY+ A+RPDI ++ + +R+ +P + H KRI++Y+ GT +
Sbjct: 32 MDRGFRRSKSEPTLYIKSQATRPDIMYATSLLSRFMQSPSQIHFGAGKRILRYLQGTKAF 211
Query: 1392 GTFYAHNSNSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAE 1451
G +Y +NS L+ Y D+DWAG+ DD KSTSG F LG+ + SW +KKQ V+ ST EAE
Sbjct: 212 GIWYTTETNSELLGYTDSDWAGSTDDMKSTSGYAFSLGSGMFSWASKKQATVAQSTAEAE 391
Query: 1452 YIA 1454
Y+A
Sbjct: 392 YVA 400
>BE609922 similar to GP|29423273|g gag-pol polyprotein {Glycine max}, partial
(7%)
Length = 340
Score = 103 bits (257), Expect = 6e-22
Identities = 50/115 (43%), Positives = 81/115 (69%), Gaps = 1/115 (0%)
Frame = +2
Query: 174 DELIGSLQTFEMSVNERSDKKSKSIAFVSNTEDDDAS-EKDSDENLSEAISMLGRKFNKV 232
DEL+GSLQTFE+ +++R++KKSK++AF+SN E ++ + D+DE L+ A +LG++F+KV
Sbjct: 2 DELMGSLQTFELGLSDRAEKKSKNLAFMSNDEGEEGEYDLDTDEGLTNAGVLLGKQFSKV 181
Query: 233 VRRFERRPRPNVPDKRSDIGKHSDFARRKKEEDKYNKSKGVQCHECEGYEHIKAE 287
+ R +RR +P+V +R D+ K S + R+ + +G+QCH CEG H+ AE
Sbjct: 182 MNRIDRRQKPHVQSRRGDVRKSSKYQRKWGVRPMH--GRGMQCHGCEGVWHVIAE 340
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 102 bits (254), Expect = 1e-21
Identities = 46/104 (44%), Positives = 74/104 (70%), Gaps = 1/104 (0%)
Frame = +3
Query: 1416 DDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWCTQLLWMKHMLREYNVK 1475
DD KST+G FF+G+ +W +KKQ V+LST EAEY+AA S +W++++L+E +
Sbjct: 9 DDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMP 188
Query: 1476 Q-DVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEEK 1518
Q + M + +N SA+ ++KNP+ H ++KHID R+HFI++ +E+K
Sbjct: 189 QEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKK 320
>TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (Fragment),
partial (16%)
Length = 562
Score = 97.8 bits (242), Expect = 3e-20
Identities = 49/122 (40%), Positives = 73/122 (59%)
Frame = +1
Query: 1239 MIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQVKQMQDSIFISQSK 1298
+I +YVDD++ +VE F + M FEM+ +G + YF G+++KQ Q+ + I Q K
Sbjct: 193 LIVSLYVDDLLVTRDDARLVEEFKQEMMQAFEMTNLGLMTYFLGIEIKQSQNKVLICQRK 372
Query: 1299 YAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLYRSMICSLLYLTASRPDIAF 1358
YAK ++KKF +E TP K K + +D+ YRS+I L+YLTA+RPDI F
Sbjct: 373 YAKEILKKFQMEECKSVSTPMNQKEKFNKVDGADKIDEGYYRSLIGCLMYLTATRPDILF 552
Query: 1359 SI 1360
+I
Sbjct: 553 AI 558
>BU548243
Length = 599
Score = 97.1 bits (240), Expect = 5e-20
Identities = 46/112 (41%), Positives = 68/112 (60%)
Frame = -1
Query: 1407 CDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWCTQLLWMK 1466
CDA WA + DD +ST G FLG NLISW+++KQ + S+TEAEY + +L W++
Sbjct: 590 CDAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQ 411
Query: 1467 HMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEEK 1518
+L E + + C+N SA+ I+ N + HSRTKH++I F+ + V K
Sbjct: 410 ALLMELQIPFTPPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSK 255
>BI425121
Length = 412
Score = 96.3 bits (238), Expect = 9e-20
Identities = 56/152 (36%), Positives = 78/152 (50%)
Frame = +3
Query: 754 SFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEKGYGIVKIRSDHGKEF 813
S G K+Y F+ VDD+SR+TWV FLA K E+ F + + +K + + +
Sbjct: 6 SLGCKKYEFLTVDDYSRYTWVYFLAHKHESLRYF---IRGFKMKKVFVFLLLEVTMELSL 176
Query: 814 ENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKKVPYHLWAEAIN 873
+ +C GI H S P TPQ+N VVERKNRTLQE AR +L
Sbjct: 177 RILS*NHFCERNGIFHNLS*PRTPQENRVVERKNRTLQEKARTILF-------------- 314
Query: 874 TACYIHYRVTIRSGTDSTLYELWKGKKPTVKY 905
T C++ ++ IR T YELWKG++ + Y
Sbjct: 315 TTCFVQNKILIRPMIKKTPYELWKGRRHIISY 410
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.329 0.141 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,462,572
Number of Sequences: 63676
Number of extensions: 900113
Number of successful extensions: 5755
Number of sequences better than 10.0: 131
Number of HSP's better than 10.0 without gapping: 5573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5693
length of query: 1518
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1408
effective length of database: 5,635,272
effective search space: 7934462976
effective search space used: 7934462976
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0166.12