BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0162a.1
(118 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC208210 weakly similar to PDB|1FSI_A.0|11513544|1FSI_A Chain A,... 165 2e-42
TC221740 similar to UP|Q9M205 (Q9M205) Regulatory protein-like (... 28 0.61
TC208023 weakly similar to UP|Q8LC07 (Q8LC07) Carnitine racemase... 27 1.0
TC212369 27 1.8
TC214177 homologue to UP|RS11_SOYBN (P17093) 40S ribosomal prote... 27 1.8
CA799157 26 2.3
TC205700 weakly similar to PIR|T48456|T48456 rna binding protein... 26 3.0
TC223511 weakly similar to UP|ACC3_LYCES (P10967) 1-aminocyclopr... 26 3.0
TC219729 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 26 3.0
TC205701 weakly similar to PIR|T48456|T48456 rna binding protein... 26 3.0
BI700311 similar to PIR|S18612|S18 lipoxygenase (EC 1.13.11.12) ... 25 4.0
BM177200 similar to GP|6625560|gb| beta-glucan binding protein {... 25 5.2
TC206509 similar to UP|Q84UV7 (Q84UV7) SGT1, partial (53%) 25 5.2
TC211115 25 5.2
TC211566 weakly similar to UP|Q6NL13 (Q6NL13) At5g37840, partial... 25 6.8
AW569880 25 6.8
TC209509 similar to UP|RNP_HUMAN (P07998) Ribonuclease pancreati... 25 6.8
TC231412 similar to UP|Q8L7S2 (Q8L7S2) AT3g60070/T2O9_50, partia... 25 6.8
TC229471 UP|Q8V7C6 (Q8V7C6) ORF1 (Fragment), partial (19%) 25 6.8
BE802667 24 8.9
>TC208210 weakly similar to PDB|1FSI_A.0|11513544|1FSI_A Chain A, Crystal
Structure Of Cyclic Nucleotide Phosphodiesterase Of
Appr>p From Arabidopsis Thaliana. {Arabidopsis
thaliana;} , partial (63%)
Length = 723
Score = 165 bits (418), Expect = 2e-42
Identities = 78/106 (73%), Positives = 87/106 (81%)
Frame = +2
Query: 13 VYSVWAIPPDHVRPRIAKLMTDLRSEFGGPHFEPHITVVGAITLTADDALNKLRSACEEL 72
VYSVWAIPP+ V R A LMT LRSEFGGPHF PHITVVGAI LT +DA+ KLRSAC+ L
Sbjct: 107 VYSVWAIPPEDVGARCANLMTALRSEFGGPHFHPHITVVGAIKLTPEDAVTKLRSACQAL 286
Query: 73 KAFQVTVDRVAAGTFFYQCVYLLLHPSPPVVETSAHCSNHFGYKSS 118
+ F VTVDRVAAG+FFYQCVYLLL P P ++ETSAHC HFGY +S
Sbjct: 287 RPFHVTVDRVAAGSFFYQCVYLLLRPDPHLLETSAHCCTHFGYTNS 424
>TC221740 similar to UP|Q9M205 (Q9M205) Regulatory protein-like (At3g60550),
partial (71%)
Length = 979
Score = 28.1 bits (61), Expect = 0.61
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 87 FFYQCVYLLLHPSPPVVETSAHC 109
F+Y + HPSPP++ S HC
Sbjct: 17 FYYLSIRASTHPSPPLLPHSFHC 85
>TC208023 weakly similar to UP|Q8LC07 (Q8LC07) Carnitine racemase like
protein, partial (95%)
Length = 1133
Score = 27.3 bits (59), Expect = 1.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 81 RVAAGTFFYQCVYLLLHPSPPV-VETSAHCSNH 112
RV TF Y CV+ HP PP + AHCS H
Sbjct: 835 RVWVKTFPYLCVH-FTHPLPPCQLLPQAHCSLH 740
>TC212369
Length = 274
Score = 26.6 bits (57), Expect = 1.8
Identities = 9/22 (40%), Positives = 14/22 (62%)
Frame = +1
Query: 81 RVAAGTFFYQCVYLLLHPSPPV 102
R+A+ F Y+C+Y + HP V
Sbjct: 109 RLASSCFMYRCIYKMQHPKTNV 174
>TC214177 homologue to UP|RS11_SOYBN (P17093) 40S ribosomal protein S11,
complete
Length = 899
Score = 26.6 bits (57), Expect = 1.8
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = +2
Query: 70 EELKAFQVTVDRVAAGTFFYQCVYLLLHP 98
EEL +F + + TF Y C Y+ L P
Sbjct: 329 EELSSFY*EIPEI*KATFQYSCTYITLFP 415
>CA799157
Length = 437
Score = 26.2 bits (56), Expect = 2.3
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Frame = +1
Query: 30 KLMTDLRSEFGGPHFEPHITVVGAITLT---ADDALNKLRSACEELKAFQVTVDRVAAGT 86
KL D+ +F P + V TL +DDA++ + S C + T V
Sbjct: 148 KLARDINYQF------PQLAGVHLSTLIPSRSDDAISLVTSLCSWDPCKRPTAAEVLQHP 309
Query: 87 FFYQCVYLLLHPSPPVVETSA 107
FF C Y+ PP + T A
Sbjct: 310 FFQSCFYI-----PPSLRTRA 357
>TC205700 weakly similar to PIR|T48456|T48456 rna binding protein-like -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(83%)
Length = 1176
Score = 25.8 bits (55), Expect = 3.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 11 KEVYSVWAIPPDHVRPRI 28
+ + V+ IPP+HV PRI
Sbjct: 528 EHLLQVYVIPPEHVHPRI 581
>TC223511 weakly similar to UP|ACC3_LYCES (P10967)
1-aminocyclopropane-1-carboxylate oxidase homolog
(Protein E8), partial (12%)
Length = 478
Score = 25.8 bits (55), Expect = 3.0
Identities = 16/48 (33%), Positives = 24/48 (49%)
Frame = +3
Query: 31 LMTDLRSEFGGPHFEPHITVVGAITLTADDALNKLRSACEELKAFQVT 78
L T+ S F P + +T + + D + K+R ACE+ FQVT
Sbjct: 282 LTTESNSNFTIPSID--LTGINDDPILRDAVVGKVRYACEKWGFFQVT 419
>TC219729 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (7%)
Length = 785
Score = 25.8 bits (55), Expect = 3.0
Identities = 11/28 (39%), Positives = 16/28 (56%)
Frame = +2
Query: 85 GTFFYQCVYLLLHPSPPVVETSAHCSNH 112
G+ F+ CV+L+LH T+ HC H
Sbjct: 23 GS*FFSCVHLVLHYFSRNNSTTLHCFIH 106
>TC205701 weakly similar to PIR|T48456|T48456 rna binding protein-like -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(61%)
Length = 756
Score = 25.8 bits (55), Expect = 3.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 11 KEVYSVWAIPPDHVRPRI 28
+ + V+ IPP+HV PRI
Sbjct: 136 EHLLQVYVIPPEHVHPRI 189
>BI700311 similar to PIR|S18612|S18 lipoxygenase (EC 1.13.11.12) - soybean
(fragment), partial (19%)
Length = 335
Score = 25.4 bits (54), Expect = 4.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 90 QCVYLLLHPSPPVVETSAHCSNH 112
Q V+ L PSP V +TS HCS+H
Sbjct: 300 QTVWQLNWPSP-VSQTSDHCSSH 235
>BM177200 similar to GP|6625560|gb| beta-glucan binding protein {Phaseolus
vulgaris}, partial (16%)
Length = 404
Score = 25.0 bits (53), Expect = 5.2
Identities = 9/34 (26%), Positives = 16/34 (46%), Gaps = 7/34 (20%)
Frame = -2
Query: 86 TFFYQCVYLLL-------HPSPPVVETSAHCSNH 112
++ +QC + ++ HP PP+ HC H
Sbjct: 298 SYIFQCCFFIINSLQGIGHPLPPLTT*KGHCPFH 197
>TC206509 similar to UP|Q84UV7 (Q84UV7) SGT1, partial (53%)
Length = 853
Score = 25.0 bits (53), Expect = 5.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 16 VWAIPPDHVRPRIAK 30
+W+ PPDHV RI K
Sbjct: 675 IWSQPPDHVSGRIHK 631
>TC211115
Length = 559
Score = 25.0 bits (53), Expect = 5.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 93 YLLLHPSPPVVETSAHCSNH 112
Y++LH P T +CSNH
Sbjct: 300 YIILHDVIPAQSTVGNCSNH 241
>TC211566 weakly similar to UP|Q6NL13 (Q6NL13) At5g37840, partial (41%)
Length = 632
Score = 24.6 bits (52), Expect = 6.8
Identities = 10/24 (41%), Positives = 14/24 (57%)
Frame = -3
Query: 23 HVRPRIAKLMTDLRSEFGGPHFEP 46
H+ P +A L L+ G PHF+P
Sbjct: 513 HLAPVVALLHKPLQVGLGQPHFDP 442
>AW569880
Length = 372
Score = 24.6 bits (52), Expect = 6.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 97 HPSPPVVETSAHCSNH 112
HP PP+ TS CS H
Sbjct: 37 HPQPPLATTSHCCSPH 84
>TC209509 similar to UP|RNP_HUMAN (P07998) Ribonuclease pancreatic precursor
(RNase 1) (RNase A) (RNase UpI-1) (RIB-1) (HP-RNase) ,
partial (8%)
Length = 980
Score = 24.6 bits (52), Expect = 6.8
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 91 CVYLLLHPSPP 101
CVY LLHP PP
Sbjct: 335 CVYPLLHPVPP 303
>TC231412 similar to UP|Q8L7S2 (Q8L7S2) AT3g60070/T2O9_50, partial (19%)
Length = 547
Score = 24.6 bits (52), Expect = 6.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 83 AAGTFFYQCVYLLLHP 98
A+ TFF+ C+YLL+ P
Sbjct: 194 ASFTFFFLCLYLLIAP 241
>TC229471 UP|Q8V7C6 (Q8V7C6) ORF1 (Fragment), partial (19%)
Length = 905
Score = 24.6 bits (52), Expect = 6.8
Identities = 11/32 (34%), Positives = 16/32 (49%)
Frame = -3
Query: 21 PDHVRPRIAKLMTDLRSEFGGPHFEPHITVVG 52
P H RPR A+ +R + P EP++ G
Sbjct: 537 PRHRRPRRARRQQQVREDLVMPEVEPYLQHFG 442
>BE802667
Length = 336
Score = 24.3 bits (51), Expect = 8.9
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -3
Query: 88 FYQCVYLLLHPSPPVVETSAHCSNH 112
F++ V ++ H + + S+HC NH
Sbjct: 253 FWRVVLMITHKTITITP*SSHCHNH 179
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,004,233
Number of Sequences: 63676
Number of extensions: 72581
Number of successful extensions: 412
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of query: 118
length of database: 12,639,632
effective HSP length: 94
effective length of query: 24
effective length of database: 6,654,088
effective search space: 159698112
effective search space used: 159698112
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0162a.1