TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0159.10
         (353 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CO985910                                                              337  4e-93
BI973641 similar to GP|9758839|dbj UDP-galactose transporter rel...   198  3e-51
TC216446 weakly similar to UP|Q8NBK6 (Q8NBK6) Homo sapiens cDNA ...   129  2e-30
TC216445 weakly similar to UP|P78383 (P78383) UDP-galactose tran...    55  5e-08
BF596689                                                               33  0.25
TC224584 similar to PIR|T49026|T49026 ubiquinol-cytochrome-c red...    33  0.25
TC215883 similar to PDB|1SE9_A.0|46015773|1SE9_A Chain A, Struct...    28  4.8
TC206839 similar to UP|Q8LG35 (Q8LG35) EF-hand Ca2+-binding prot...    28  6.3
TC226962 weakly similar to UP|Q9Y616 (Q9Y616) IL-1 receptor-asso...    28  6.3
TC230731                                                               28  8.2

>CO985910 
          Length = 811

 Score =  337 bits (865), Expect = 4e-93
 Identities = 161/187 (86%), Positives = 176/187 (94%)
 Frame = -1

Query: 167 AGEDISPYSRGRENTVWGVLLMTGYLGCDGFTSTFQDKLFRGYDMEIHNQIFYTTLCSCI 226
           AG DISPY RGRENTVWGVLLM GYLGCDGFTSTFQDK+F+GY+MEIHNQIFYTTLCSCI
Sbjct: 811 AGTDISPYGRGRENTVWGVLLMLGYLGCDGFTSTFQDKMFKGYNMEIHNQIFYTTLCSCI 632

Query: 227 LSLTGLILQGHLIPAIEFVYRHHDCFFDIALLSTVATASQFFISYTIRTFGALTFATIMT 286
           LSL GLI+QGHL+PA+EFVY H DCFFDIALLSTVATASQFFISYTIRTFGALTFATIMT
Sbjct: 631 LSLAGLIIQGHLLPAVEFVYIHKDCFFDIALLSTVATASQFFISYTIRTFGALTFATIMT 452

Query: 287 TRQLVSIMLSCVWFSHPLSWEQWIGAVIVFGSLYAKSFTRKAPQKTTSSDSIPLVQSGDS 346
           TRQLVSI+LSCVWF+HPLSWEQWIGAVIVFG++YAKSF RKAP+KTTS  S+  VQ+G+S
Sbjct: 451 TRQLVSILLSCVWFAHPLSWEQWIGAVIVFGAIYAKSFLRKAPEKTTS--SVEHVQNGNS 278

Query: 347 NNLKDNP 353
           NNLK+NP
Sbjct: 277 NNLKENP 257


>BI973641 similar to GP|9758839|dbj UDP-galactose transporter related
           protein-like {Arabidopsis thaliana}, partial (29%)
          Length = 444

 Score =  198 bits (504), Expect = 3e-51
 Identities = 101/121 (83%), Positives = 109/121 (89%), Gaps = 2/121 (1%)
 Frame = +3

Query: 1   MAESPSTSSSSSPPDS--RDNKLWKGIFAVSGIMVTLVTYGVLQEKIMRVPYGAQKEYFK 58
           MAE+ S S SS   DS  R+NKLWKG FAV+GIM+TL TYGVLQEKIMRVPYG  K+YFK
Sbjct: 81  MAETTSASVSSPAGDSNWRENKLWKGTFAVAGIMLTLFTYGVLQEKIMRVPYGVNKDYFK 260

Query: 59  HSLFLVFCNRITTSAVSAGSLLASKKALDPVAPIYKYCLVSVSNILTTTCQYEALKYVSF 118
           +SLFLVFCNRITTSAVSAG+LLASKKALDPVAPIYKYCLVSVSNILTT+CQYEALKYVSF
Sbjct: 261 YSLFLVFCNRITTSAVSAGALLASKKALDPVAPIYKYCLVSVSNILTTSCQYEALKYVSF 440

Query: 119 P 119
           P
Sbjct: 441 P 443


>TC216446 weakly similar to UP|Q8NBK6 (Q8NBK6) Homo sapiens cDNA PSEC0149
           fis, clone PLACE1007338, partial (12%)
          Length = 1397

 Score =  129 bits (324), Expect = 2e-30
 Identities = 95/300 (31%), Positives = 139/300 (45%), Gaps = 6/300 (2%)
 Frame = +2

Query: 26  FAVSGIMVTLVTYGVLQEKIMRVPYGAQKEYFKHSLFLVFCNRITTSAVSAGSLLASKKA 85
           F V+GI    +  GVLQE +    +  ++  F+H  FL     +     S   +      
Sbjct: 116 FCVAGIWSAYIYQGVLQENVSTKRFNGER--FEHLAFLNLAQNVVCLIWSFIMIKMWASG 289

Query: 86  LDPVAPIYKYCLVSVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTIIMQKRYQ 145
               AP + Y    ++N +      EALKY+S+P Q LAK +KMIPVM+ GT++   RY 
Sbjct: 290 NSGGAPWWSYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYT 469

Query: 146 GPDYMLAFLVTLGCSVF-ILYPAGEDISPYSRGRENTVWGVLLMTGYLGCDGFTSTFQDK 204
            P+Y+  FLV  G S F +L  + + IS  +       +G+  +   L  DGFT+  QD 
Sbjct: 470 FPEYLCTFLVAGGVSTFALLKTSSKTISKLAHPNAPLGYGLCFLN--LAFDGFTNATQDS 643

Query: 205 LFRGYDMEIHNQI-----FYTTLCSCILSLTGLILQGHLIPAIEFVYRHHDCFFDIALLS 259
           L   Y       I      + T+ + I         G    A+ F  +H +  +DI L  
Sbjct: 644 LKARYPKTSAWDIMLGMNLWGTIYNMIYMFGWPRASG--FEAVRFCQQHPEAAWDIFLYC 817

Query: 260 TVATASQFFISYTIRTFGALTFATIMTTRQLVSIMLSCVWFSHPLSWEQWIGAVIVFGSL 319
                 Q FI  TI  FG+L   TI TTR+ VSI++S +   +PLS +QW    +VF  L
Sbjct: 818 CCGAVGQNFIFLTISRFGSLANTTITTTRKFVSIVVSSLLSGNPLSTKQWGCVFMVFSGL 997


>TC216445 weakly similar to UP|P78383 (P78383) UDP-galactose transporter
           related isozyme 1, partial (9%)
          Length = 700

 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 31/79 (39%), Positives = 42/79 (52%)
 Frame = +2

Query: 241 AIEFVYRHHDCFFDIALLSTVATASQFFISYTIRTFGALTFATIMTTRQLVSIMLSCVWF 300
           A+ F   H +  +DI L        Q FI  TI  FG+L   TI TTR+ VSI++S +  
Sbjct: 8   AVRFCQHHPEAAWDIFLYCCCGAVGQNFIFLTISRFGSLANTTITTTRKFVSIVVSSLLS 187

Query: 301 SHPLSWEQWIGAVIVFGSL 319
            +PLS +QW    +VF  L
Sbjct: 188 GNPLSTKQWGCVSMVFSGL 244


>BF596689 
          Length = 292

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = +2

Query: 1   MAESPSTSSSSSPPDSRDNKLWKGIFA 27
           MAES + S+ S    SRDNK WKG FA
Sbjct: 212 MAESCTNSAVSVDSISRDNKFWKGAFA 292


>TC224584 similar to PIR|T49026|T49026 ubiquinol-cytochrome-c reductase-like
           protein - Arabidopsis thaliana {Arabidopsis thaliana;} ,
           partial (86%)
          Length = 595

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +1

Query: 2   AESPSTSSSSSPPDSRDNKLWKGIFAVSGIMVTL 35
           A +PSTS SSSP  S ++ LW   F  SG  +TL
Sbjct: 244 AATPSTSPSSSPAPSSESGLWITEFTRSGSTITL 345


>TC215883 similar to PDB|1SE9_A.0|46015773|1SE9_A Chain A, Structure Of
           At3g01050, A Ubiquitin-Fold Protein From Arabidopsis
           Thaliana. {Arabidopsis thaliana;} , partial (66%)
          Length = 1110

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
 Frame = -1

Query: 68  RITTSAVSAGSLLASKKALDPVAPIYKYCLVSVSNILTTTCQYEALKYVS----FPVQTL 123
           R  TSA+ +G    +   L  VA    +   SV+   TTTC    +  VS    +   T+
Sbjct: 690 RQMTSAIQSGCYKITHMHLFCVALFAAFFSFSVAGCCTTTCIVVTVSGVSHNGLWHSPTV 511

Query: 124 AKCAKMIPVMIWGTIIMQKRYQGPDYMLAF---LVTLGCSVFILYPAGEDISPYSRGREN 180
              +K+ P +I  T  M     GP + L+F     TL  +V IL  AG+ + P S    N
Sbjct: 510 LLFSKIFPALINFTSFM---VFGP-FSLSFGH*ARTLSFNVAILVAAGKLLGPISEPSVN 343


>TC206839 similar to UP|Q8LG35 (Q8LG35) EF-hand Ca2+-binding protein CCD1,
           partial (74%)
          Length = 552

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 4/41 (9%)
 Frame = +2

Query: 267 FFISYTIRTFGALTFATIMTTRQLVSIMLSC----VWFSHP 303
           F++SYT+ T  AL+F     TR+ +  +L+C     W+  P
Sbjct: 29  FYLSYTLTTLFALSFLHYGCTRKQLPRLLACDGQQAWWGWP 151


>TC226962 weakly similar to UP|Q9Y616 (Q9Y616) IL-1
           receptor-associated-kinase-M (Interleukin-1
           receptor-associated kinase 3), partial (8%)
          Length = 1084

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
 Frame = -3

Query: 55  EYFKHSLFLVFCNRITTSAVSAGSLLASKKALDPVAPIYKYCLVSVSNILTTTCQYEALK 114
           E+    L    C+R+  ++V  G  LAS         ++++C  SV+ +    C Y    
Sbjct: 617 EFLPAVLGASICSRVAKTSVIGGLALAS---------LFRHCRASVAAVKAPFCGYWPSN 465

Query: 115 YVSFPVQTLAKCAK----------MIPVMIWGTIIMQKR 143
            VS  + +L    K           IPVM+  T  +  R
Sbjct: 464 LVSIILNSLRLSLKYGFAQSTRFCSIPVMVLSTARLPDR 348


>TC230731 
          Length = 1006

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 2   AESPSTSSSSSPPDSRDNKLWKG 24
           AE PST++   PPD+   K W G
Sbjct: 105 AEPPSTTADVPPPDAAAEKRWPG 173


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.324    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,911,068
Number of Sequences: 63676
Number of extensions: 266149
Number of successful extensions: 2155
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2149
length of query: 353
length of database: 12,639,632
effective HSP length: 98
effective length of query: 255
effective length of database: 6,399,384
effective search space: 1631842920
effective search space used: 1631842920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)