BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0157b.4
(77 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC215738 similar to GB|AAN28739.1|23505759|AY143800 At2g23090/F2... 143 2e-35
TC215739 similar to GB|AAN28739.1|23505759|AY143800 At2g23090/F2... 142 3e-35
TC203845 similar to GB|AAN28739.1|23505759|AY143800 At2g23090/F2... 142 3e-35
BM891644 141 7e-35
TC203544 similar to GB|AAN28739.1|23505759|AY143800 At2g23090/F2... 140 1e-34
BI317127 73 3e-14
TC216562 37 0.002
BI971399 28 0.66
TC217570 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate... 28 0.66
TC223312 28 1.1
TC220403 similar to UP|Q7X7W8 (Q7X7W8) Makorin ring-zinc-finger ... 27 1.9
TC208844 weakly similar to UP|Q76KB3 (Q76KB3) Makorin ring-zinc-... 27 2.5
TC211621 weakly similar to UP|Q8GSL4 (Q8GSL4) Origin recognition... 27 2.5
TC204289 26 4.2
TC204290 26 4.2
BI974743 25 7.2
BI973471 25 7.2
TC205545 similar to PIR|T52454|T52454 ATP-dependent Clp proteina... 25 7.2
TC231560 similar to UP|Q6IFZ6 (Q6IFZ6) Type II keratin Kb39, par... 25 9.5
>TC215738 similar to GB|AAN28739.1|23505759|AY143800 At2g23090/F21P24.15
{Arabidopsis thaliana;} , complete
Length = 655
Score = 143 bits (360), Expect = 2e-35
Identities = 68/78 (87%), Positives = 73/78 (93%), Gaps = 1/78 (1%)
Frame = +2
Query: 1 MGGGNAQKAKMARERNLEKQKGA-KGSQLETNKKAMSIQCKVCMQTFICTTSEVKCREHA 59
MGGGN QKAKMARE+NLEKQK A KGSQL++NKKAMSIQCKVCMQTF+CTTSEVKCREHA
Sbjct: 125 MGGGNGQKAKMAREKNLEKQKAASKGSQLDSNKKAMSIQCKVCMQTFMCTTSEVKCREHA 304
Query: 60 EAKHPKSDVVTCFPHLQK 77
EAKHPKSDV CFPHL+K
Sbjct: 305 EAKHPKSDVYACFPHLKK 358
>TC215739 similar to GB|AAN28739.1|23505759|AY143800 At2g23090/F21P24.15
{Arabidopsis thaliana;} , complete
Length = 662
Score = 142 bits (358), Expect = 3e-35
Identities = 67/78 (85%), Positives = 73/78 (92%), Gaps = 1/78 (1%)
Frame = +2
Query: 1 MGGGNAQKAKMARERNLEKQKGA-KGSQLETNKKAMSIQCKVCMQTFICTTSEVKCREHA 59
MGGGN QKAKMARE+N+EKQK A KGSQL++NKKAMSIQCKVCMQTF+CTTSEVKCREHA
Sbjct: 125 MGGGNGQKAKMAREKNIEKQKAASKGSQLDSNKKAMSIQCKVCMQTFMCTTSEVKCREHA 304
Query: 60 EAKHPKSDVVTCFPHLQK 77
EAKHPKSDV CFPHL+K
Sbjct: 305 EAKHPKSDVYACFPHLKK 358
>TC203845 similar to GB|AAN28739.1|23505759|AY143800 At2g23090/F21P24.15
{Arabidopsis thaliana;} , complete
Length = 692
Score = 142 bits (358), Expect = 3e-35
Identities = 67/78 (85%), Positives = 74/78 (93%), Gaps = 1/78 (1%)
Frame = +2
Query: 1 MGGGNAQKAKMARERNLEKQKGA-KGSQLETNKKAMSIQCKVCMQTFICTTSEVKCREHA 59
MGGGNAQK+KMARE+NLEKQK A KGSQL++NKKAMSIQCKVCMQTFICTTSEVKC+EHA
Sbjct: 209 MGGGNAQKSKMAREKNLEKQKAAAKGSQLDSNKKAMSIQCKVCMQTFICTTSEVKCKEHA 388
Query: 60 EAKHPKSDVVTCFPHLQK 77
EAKHPKSD+ CFPHL+K
Sbjct: 389 EAKHPKSDLYVCFPHLKK 442
>BM891644
Length = 415
Score = 141 bits (355), Expect = 7e-35
Identities = 65/76 (85%), Positives = 70/76 (91%)
Frame = +1
Query: 1 MGGGNAQKAKMARERNLEKQKGAKGSQLETNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
MGGGN QKAKMARERN+EK K AKGSQLE NKKAM+IQCKVCMQTFICTTSEVKCREHAE
Sbjct: 37 MGGGNGQKAKMARERNMEKNKPAKGSQLEANKKAMNIQCKVCMQTFICTTSEVKCREHAE 216
Query: 61 AKHPKSDVVTCFPHLQ 76
AKHPK+ + TCFPHL+
Sbjct: 217 AKHPKAHLYTCFPHLK 264
>TC203544 similar to GB|AAN28739.1|23505759|AY143800 At2g23090/F21P24.15
{Arabidopsis thaliana;} , complete
Length = 951
Score = 140 bits (353), Expect = 1e-34
Identities = 66/78 (84%), Positives = 74/78 (94%), Gaps = 1/78 (1%)
Frame = +3
Query: 1 MGGGNAQKAKMARERNLEKQKGA-KGSQLETNKKAMSIQCKVCMQTFICTTSEVKCREHA 59
MGGGNAQK+KMARE+NLEKQ+ A KGSQL++NKKAMSIQCKVCMQTFICTTSEVKC+EHA
Sbjct: 231 MGGGNAQKSKMAREKNLEKQRAAAKGSQLDSNKKAMSIQCKVCMQTFICTTSEVKCKEHA 410
Query: 60 EAKHPKSDVVTCFPHLQK 77
EAKHPKSD+ CFPHL+K
Sbjct: 411 EAKHPKSDLHVCFPHLKK 464
>BI317127
Length = 280
Score = 72.8 bits (177), Expect = 3e-14
Identities = 40/55 (72%), Positives = 45/55 (81%), Gaps = 1/55 (1%)
Frame = +2
Query: 1 MGGGNAQKAKMARERNLEKQK-GAKGSQLETNKKAMSIQCKVCMQTFICTTSEVK 54
MGGGNAQK+KMARE+NLEKQK AKGSQL++NKKAMSI + ICTTSEVK
Sbjct: 116 MGGGNAQKSKMAREKNLEKQKAAAKGSQLDSNKKAMSILFFSPPRAGICTTSEVK 280
>TC216562
Length = 495
Score = 36.6 bits (83), Expect = 0.002
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +3
Query: 12 ARERNLEKQKGAKGSQLETNKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPK 65
A++RN E+ + KGSQLE + + C +C ++ + +H +KHPK
Sbjct: 84 AQKRNAERNQKGKGSQLEARAVGLKVICPICKAQL---ANQNQLVDHYASKHPK 236
>BI971399
Length = 692
Score = 28.5 bits (62), Expect = 0.66
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 28 LETNKKAMSIQCKVCMQTFICTTSEVKCREHAEAK 62
++TN+ + +CM+ FIC S K RE EAK
Sbjct: 2 IQTNEYFGQVGDIMCMEIFICRCSGTKEREKKEAK 106
>TC217570 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate kinase 1
(Pantothenic acid kinase 1) , partial (25%)
Length = 873
Score = 28.5 bits (62), Expect = 0.66
Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 1/35 (2%)
Frame = -3
Query: 41 VCMQT-FICTTSEVKCREHAEAKHPKSDVVTCFPH 74
VC Q F T E+ C + KHPK++V TC H
Sbjct: 262 VCNQDHFSSTAEELSC----QGKHPKNNVSTCIVH 170
>TC223312
Length = 685
Score = 27.7 bits (60), Expect = 1.1
Identities = 12/37 (32%), Positives = 19/37 (50%)
Frame = +2
Query: 8 KAKMARERNLEKQKGAKGSQLETNKKAMSIQCKVCMQ 44
K K + RNL K+ +Q+ T +K C VC++
Sbjct: 80 KGKKTKPRNLNKRSLDGRNQINTTRKRKHYSCVVCVE 190
>TC220403 similar to UP|Q7X7W8 (Q7X7W8) Makorin ring-zinc-finger protein
(Makorin RING finger protein), partial (62%)
Length = 1109
Score = 26.9 bits (58), Expect = 1.9
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 24 KGSQLETNKKAMSIQCKVCMQTFICTTSEVKCR 56
KG L+ K + +QC VC++ + C+
Sbjct: 451 KGKYLQALKDSQEVQCNVCLERVLSKPKPADCK 549
>TC208844 weakly similar to UP|Q76KB3 (Q76KB3) Makorin ring-zinc-finger
protein (Fragment), partial (34%)
Length = 1264
Score = 26.6 bits (57), Expect = 2.5
Identities = 13/43 (30%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Frame = +1
Query: 24 KGSQLETNKKAMSIQCKVCMQTFIC--TTSEVKCREHAEAKHP 64
K L+ K++ I+C VC++ + T +E K +E HP
Sbjct: 208 KHKHLDALKRSQEIECSVCLELVLSKPTAAECKFGLLSECDHP 336
>TC211621 weakly similar to UP|Q8GSL4 (Q8GSL4) Origin recognition complex
subunit 6-like protein, partial (11%)
Length = 664
Score = 26.6 bits (57), Expect = 2.5
Identities = 18/55 (32%), Positives = 27/55 (48%)
Frame = +1
Query: 7 QKAKMARERNLEKQKGAKGSQLETNKKAMSIQCKVCMQTFICTTSEVKCREHAEA 61
+KAK +R+ EK K + + E NKKA CK QT + ++ + EA
Sbjct: 121 KKAKKMEKRDFEKWKSSVLASNEQNKKA---PCKRTRQTSLNFLNKASDNQELEA 276
>TC204289
Length = 635
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 2/37 (5%)
Frame = -1
Query: 38 QCKVCMQTFICTTSEVK--CREHAEAKHPKSDVVTCF 72
Q K MQ C SE + C+ + KHPK+ ++CF
Sbjct: 404 QGKHLMQIEHCKLSEPQQHCQLQ*DEKHPKTSTLSCF 294
>TC204290
Length = 823
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 2/37 (5%)
Frame = -3
Query: 38 QCKVCMQTFICTTSEVK--CREHAEAKHPKSDVVTCF 72
Q K MQ C SE + C+ + KHPK+ ++CF
Sbjct: 581 QGKHLMQIEHCKLSEPQQHCQLQ*DEKHPKTSTLSCF 471
>BI974743
Length = 421
Score = 25.0 bits (53), Expect = 7.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 16 NLEKQKGAKGSQLETNKKAMSIQCKVCMQTFIC 48
NL+K K K + ++ IQC C + F C
Sbjct: 291 NLKKGKRKKCHWCQRSESGNLIQCSSCQREFFC 389
>BI973471
Length = 421
Score = 25.0 bits (53), Expect = 7.2
Identities = 12/39 (30%), Positives = 19/39 (47%), Gaps = 3/39 (7%)
Frame = -2
Query: 41 VCMQTFICTTSEVK---CREHAEAKHPKSDVVTCFPHLQ 76
+C +TF C + K + A+ HP + FPHL+
Sbjct: 174 LCERTFFCHFVKAKGF*LGKEAKNPHPIGPPIMAFPHLE 58
>TC205545 similar to PIR|T52454|T52454 ATP-dependent Clp proteinase
catalytic chain P2 [imported] - Arabidopsis thaliana
{Arabidopsis thaliana;} , partial (81%)
Length = 1369
Score = 25.0 bits (53), Expect = 7.2
Identities = 18/59 (30%), Positives = 29/59 (48%)
Frame = -3
Query: 13 RERNLEKQKGAKGSQLETNKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVVTC 71
R R+L+ Q G + +++ +C+ + T EVK RE + PKS+ VTC
Sbjct: 218 RTRSLKFQSGVELCGNTRSRRRRKKRCRTGGVRYHRHT-EVKKRERIGKQKPKSERVTC 45
>TC231560 similar to UP|Q6IFZ6 (Q6IFZ6) Type II keratin Kb39, partial (3%)
Length = 519
Score = 24.6 bits (52), Expect = 9.5
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 3 GGNAQKAKMARERNLEKQK-GAKGSQLETNKKAMS 36
G N KAK+ N+E QK G+ G++L ++ S
Sbjct: 491 GNNMTKAKLTNGLNIETQKRGSDGAEL*RGRRLTS 387
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.125 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,586,256
Number of Sequences: 63676
Number of extensions: 41428
Number of successful extensions: 270
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of query: 77
length of database: 12,639,632
effective HSP length: 53
effective length of query: 24
effective length of database: 9,264,804
effective search space: 222355296
effective search space used: 222355296
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0157b.4