BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0154.7
(495 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226947 similar to UP|IF39_TOBAC (P56821) Eukaryotic translatio... 327 6e-90
TC226948 similar to UP|IF39_ARATH (Q9C5Z1) Eukaryotic translatio... 273 1e-73
TC226946 similar to UP|IF39_TOBAC (P56821) Eukaryotic translatio... 246 1e-65
TC221841 similar to UP|IF39_TOBAC (P56821) Eukaryotic translatio... 110 1e-24
BI968667 weakly similar to SP|P56821|IF39_ Eukaryotic translatio... 95 6e-20
TC208733 weakly similar to UP|Q9VNX8 (Q9VNX8) CG7414-PA (LD24903... 60 3e-09
TC225986 weakly similar to UP|Q9W1I6 (Q9W1I6) CG18426-PA (LD1203... 35 0.077
TC225579 similar to UP|Q84KS7 (Q84KS7) AP2/ERF-domain protein, p... 35 0.077
TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%) 34 0.17
CK606020 32 0.50
TC217059 similar to UP|Q8L7W3 (Q8L7W3) At2g29210/F16P2.41, parti... 32 0.50
NP595172 polyprotein [Glycine max] 32 0.50
BE209422 similar to GP|4914334|gb|A F14N23.20 {Arabidopsis thali... 32 0.65
TC216047 weakly similar to UP|IF3A_ARATH (Q9LD55) Eukaryotic tra... 32 0.65
AW782061 similar to GP|10798644|emb AP2 domain-containing transc... 32 0.85
TC204256 similar to PDB|1OD5_A.0|33357661|1OD5_A Chain A, Crysta... 32 0.85
TC225357 UP|Q39922 (Q39922) Gy5 protein, complete 32 0.85
TC207028 similar to UP|Q9LW95 (Q9LW95) KED, partial (13%) 31 1.1
TC229447 weakly similar to UP|Q7PC53 (Q7PC53) Chitinase B, parti... 31 1.1
TC208616 weakly similar to UP|Q41026 (Q41026) HMG 1 protein, par... 31 1.1
>TC226947 similar to UP|IF39_TOBAC (P56821) Eukaryotic translation initiation
factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b),
partial (25%)
Length = 890
Score = 327 bits (839), Expect = 6e-90
Identities = 154/195 (78%), Positives = 170/195 (86%)
Frame = +1
Query: 301 GRFIVVAGLKGFNGQLEFYNVDELETMVTAEHFMTTDIEWDPTGRYVTTSVTSVHDVENG 360
GR+IV+AG GFNGQL + L M TAEHFM DIEWDPTGRYV T+VTSVH++ENG
Sbjct: 1 GRYIVLAGXXGFNGQLXXXTLMNLXXMXTAEHFMAXDIEWDPTGRYVATAVTSVHEMENG 180
Query: 361 FNIWSFSGKHLYRIMKDHFFQFSWRARPPSFLTPEKEEEIANNLKKYSKKYEAEDQDESM 420
FNIWSF+GKHLYRI+KDHFFQF WR RPPSFLTPEKEEEIA NLKKYSKKYEAEDQD S+
Sbjct: 181 FNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSL 360
Query: 421 LLSEQEQEKCRMLKEEWDMWVNEWKWMHEEEKLQREQHRDGETSDEEEEYEAKDIEVEEV 480
LLSEQE+EK RMLKEEWD WVNEWK +HEEE LQR++ RDGE SDEEEEYEAKDIEVEEV
Sbjct: 361 LLSEQEREKRRMLKEEWDKWVNEWKQIHEEESLQRQKLRDGEASDEEEEYEAKDIEVEEV 540
Query: 481 IDVSEEILHFEYGQE 495
IDV++E+LH EYGQE
Sbjct: 541 IDVTKEVLHLEYGQE 585
>TC226948 similar to UP|IF39_ARATH (Q9C5Z1) Eukaryotic translation initiation
factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b)
(p82), partial (26%)
Length = 571
Score = 273 bits (699), Expect = 1e-73
Identities = 133/152 (87%), Positives = 141/152 (92%)
Frame = +3
Query: 205 LNRHTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFVVIHGDDSK 264
+ R+TKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRF VIHGD+ K
Sbjct: 117 VERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPK 296
Query: 265 PDVSIYSMRTAQKAGWVSKLTALKGKQANALFWSPAGRFIVVAGLKGFNGQLEFYNVDEL 324
PDVSIYSMRT Q + VSKLT LKGKQANALFWSPAGR+IV+AGLKGFNGQLEFYNVDEL
Sbjct: 297 PDVSIYSMRTGQNSR-VSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDEL 473
Query: 325 ETMVTAEHFMTTDIEWDPTGRYVTTSVTSVHD 356
ETM TAEHFM TDIEWDPTGRYV T+VTSVH+
Sbjct: 474 ETMATAEHFMATDIEWDPTGRYVATAVTSVHE 569
>TC226946 similar to UP|IF39_TOBAC (P56821) Eukaryotic translation initiation
factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b),
partial (18%)
Length = 646
Score = 246 bits (629), Expect = 1e-65
Identities = 115/136 (84%), Positives = 125/136 (91%)
Frame = +3
Query: 360 GFNIWSFSGKHLYRIMKDHFFQFSWRARPPSFLTPEKEEEIANNLKKYSKKYEAEDQDES 419
GFNIWSF+GKHLYRI+KDHFFQF WR RPPSFLTPEKEEEIA NLKKYSKKYEAEDQD S
Sbjct: 3 GFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVS 182
Query: 420 MLLSEQEQEKCRMLKEEWDMWVNEWKWMHEEEKLQREQHRDGETSDEEEEYEAKDIEVEE 479
+LLSEQE+EK RMLKEEWD WVNEWK +HEEE LQR++ RDGE SDEEEEYEAKDIEVEE
Sbjct: 183 LLLSEQEREKRRMLKEEWDKWVNEWKRIHEEESLQRQKLRDGEASDEEEEYEAKDIEVEE 362
Query: 480 VIDVSEEILHFEYGQE 495
VID++EE+LH EYGQE
Sbjct: 363 VIDLTEEVLHLEYGQE 410
>TC221841 similar to UP|IF39_TOBAC (P56821) Eukaryotic translation initiation
factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b),
partial (50%)
Length = 1207
Score = 110 bits (275), Expect = 1e-24
Identities = 55/86 (63%), Positives = 62/86 (71%), Gaps = 14/86 (16%)
Frame = +1
Query: 1 MGY---KYNTPQEAQLAKEMLHGYKLD-----------EFDSFMRVPDEWDPPETEPYPE 46
+GY +YNTPQEA+LAKE HGYKLD +FD FM+VP+EW PPET+PY
Sbjct: 394 LGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFAVSMFDDFDRFMKVPNEWAPPETKPYAP 573
Query: 47 KENQQHWLTDAKARDQFVIRTDSDTE 72
EN QHWLTDAKARDQFVIR SDTE
Sbjct: 574 GENLQHWLTDAKARDQFVIRAGSDTE 651
Score = 32.7 bits (73), Expect = 0.38
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 180 QDKSGCADEFAIGGTGGVTG 199
+D G AD+FA+GG GGVTG
Sbjct: 965 RDFKGSADDFAVGGAGGVTG 1024
>BI968667 weakly similar to SP|P56821|IF39_ Eukaryotic translation initiation
factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b).,
partial (11%)
Length = 514
Score = 95.1 bits (235), Expect = 6e-20
Identities = 47/86 (54%), Positives = 60/86 (69%)
Frame = -3
Query: 388 PPSFLTPEKEEEIANNLKKYSKKYEAEDQDESMLLSEQEQEKCRMLKEEWDMWVNEWKWM 447
PPS L PEK+ EIA LKK S+K+EAE QD S+++S ++ K R+LK+EWD WVNE
Sbjct: 506 PPSLLPPEKQSEIAKILKKSSQKFEAEAQDVSLVVSXXKR*KRRLLKKEWDKWVNECNQT 327
Query: 448 HEEEKLQREQHRDGETSDEEEEYEAK 473
H+EE LQR++ RDG SDE E K
Sbjct: 326 HKEESLQRQKFRDGHASDE*ERIVGK 249
>TC208733 weakly similar to UP|Q9VNX8 (Q9VNX8) CG7414-PA (LD24903p), partial
(13%)
Length = 1217
Score = 59.7 bits (143), Expect = 3e-09
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Frame = +1
Query: 293 NALFWSPAGRFIVVAGLKGFNGQLEFYN-VDELETMVTAEHFMTTDIEWDPTGRYVTTSV 351
N + W+P G+F+ +AG G + F++ +D+ + T + T EW P G Y T+
Sbjct: 424 NTIRWNPKGKFLCLAGFGNLPGDMVFWDYIDKKQLGATKAEWSVTS-EWSPDGCYFMTAT 600
Query: 352 TSVH-DVENGFNIWSFSGKHLYRIMKDHFFQFSWRARPPS 390
T+ V+NG I+ ++G ++ M D +Q W+ PS
Sbjct: 601 TAPRLQVDNGIKIFHYNGSLYFKKMFDKLYQADWKPESPS 720
>TC225986 weakly similar to UP|Q9W1I6 (Q9W1I6) CG18426-PA (LD12035p), partial
(13%)
Length = 1553
Score = 35.0 bits (79), Expect = 0.077
Identities = 14/85 (16%), Positives = 44/85 (51%)
Frame = +2
Query: 395 EKEEEIANNLKKYSKKYEAEDQDESMLLSEQEQEKCRMLKEEWDMWVNEWKWMHEEEKLQ 454
+++ E+ + ++YE E + E + +++ + + +++ ++ +W++ E++ +
Sbjct: 23 DRDRELKREKDRELERYEREAERERVRKEREQRRRVEEAERQYETYLKDWEYREREKEKE 202
Query: 455 REQHRDGETSDEEEEYEAKDIEVEE 479
R+ ++ E E E K+I +E
Sbjct: 203 RQYEKEKE--KERERKRRKEILYDE 271
>TC225579 similar to UP|Q84KS7 (Q84KS7) AP2/ERF-domain protein, partial (31%)
Length = 1156
Score = 35.0 bits (79), Expect = 0.077
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 416 QDESMLLSEQEQEKCRMLKEEWDMWVNEWKWMHEEEKLQREQ 457
Q +++ E+E+EKC KEEW W EE++QR Q
Sbjct: 289 QKSGVIM*EEEEEKCECRKEEW--------WASSEERVQRNQ 390
>TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%)
Length = 1005
Score = 33.9 bits (76), Expect = 0.17
Identities = 25/86 (29%), Positives = 43/86 (49%)
Frame = +3
Query: 395 EKEEEIANNLKKYSKKYEAEDQDESMLLSEQEQEKCRMLKEEWDMWVNEWKWMHEEEKLQ 454
+K+EE + LK+ K E ED + + + ++EK E D H++EK
Sbjct: 411 DKDEE-TDTLKEKGKNDEGEDDEGNKKKKKDKKEK------EKD---------HKKEKKD 542
Query: 455 REQHRDGETSDEEEEYEAKDIEVEEV 480
+E+ GE D + E +DI++EE+
Sbjct: 543 KEE---GEKEDSKVEVSVRDIDIEEI 611
>CK606020
Length = 340
Score = 32.3 bits (72), Expect = 0.50
Identities = 21/68 (30%), Positives = 34/68 (49%)
Frame = +1
Query: 413 AEDQDESMLLSEQEQEKCRMLKEEWDMWVNEWKWMHEEEKLQREQHRDGETSDEEEEYEA 472
A D + L E+E+E+ +EE EEE+ + E+ + E + EEE E
Sbjct: 166 ANDDEIDPSLDEEEEEEEEEEEEE-----------EEEEEEEIEEEEEEEEEEVEEEVEE 312
Query: 473 KDIEVEEV 480
+++E EEV
Sbjct: 313 EEVEGEEV 336
Score = 30.4 bits (67), Expect = 1.9
Identities = 14/37 (37%), Positives = 23/37 (61%)
Frame = +1
Query: 449 EEEKLQREQHRDGETSDEEEEYEAKDIEVEEVIDVSE 485
EEE+ + E+ + E + EEE E ++ EVEE ++ E
Sbjct: 208 EEEEEEEEEEEEEEEEEIEEEEEEEEEEVEEEVEEEE 318
Score = 29.6 bits (65), Expect = 3.2
Identities = 15/40 (37%), Positives = 24/40 (59%)
Frame = +1
Query: 447 MHEEEKLQREQHRDGETSDEEEEYEAKDIEVEEVIDVSEE 486
+ EEE+ + E+ + E +EEE E ++ E EEV + EE
Sbjct: 193 LDEEEEEEEEEEEEEEEEEEEEIEEEEEEEEEEVEEEVEE 312
Score = 28.5 bits (62), Expect = 7.2
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 435 EEWDMWVNEWKWMHEEEKLQREQHRDGETSDEEEE-YEAKDIEVEEVIDVSEEI 487
+E D ++E + EEE+ + E+ + E +EEEE E + EVEE EE+
Sbjct: 175 DEIDPSLDEEEEEEEEEEEEEEEEEEEEIEEEEEEEEEEVEEEVEEEEVEGEEV 336
>TC217059 similar to UP|Q8L7W3 (Q8L7W3) At2g29210/F16P2.41, partial (9%)
Length = 1565
Score = 32.3 bits (72), Expect = 0.50
Identities = 25/80 (31%), Positives = 40/80 (49%), Gaps = 9/80 (11%)
Frame = +1
Query: 405 KKYSKKYEAEDQ---DESMLLSEQEQEKCRMLKEEWDMWVNEWKWMHEEEKLQREQHR-- 459
K+ KKY + D+ D+S L E +E R KEE + E + EE++ +RE+ R
Sbjct: 967 KRSEKKYTSSDEDYSDDSEL--EDRKEAKRRRKEEKKLQKEEKRRRREEKRRRREERRAE 1140
Query: 460 ----DGETSDEEEEYEAKDI 475
+T D ++ EAK +
Sbjct: 1141 KLKMKSKTDDISDDEEAKQM 1200
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 32.3 bits (72), Expect = 0.50
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 152 EFPKFDGVDPVSWIARAEKIFEVHNLQEQDK 182
+FP+FDG + + WI +AE+ F+ + + D+
Sbjct: 301 DFPRFDGKNVMDWIFKAEQFFDYYATPDADR 393
>BE209422 similar to GP|4914334|gb|A F14N23.20 {Arabidopsis thaliana},
partial (2%)
Length = 439
Score = 32.0 bits (71), Expect = 0.65
Identities = 28/94 (29%), Positives = 43/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 396 KEEEIANNLKKYSKKYEAEDQDESMLLSEQEQEKCRMLKEEWDMWVNEWKWMHEEEKLQR 455
+EEE NN E+Q LL +QE E RM ++ E WM ++
Sbjct: 13 EEEERLNN---------PEEQRRMQLLEQQEAE--RMQRDMILFREREKAWMDTVITQKQ 159
Query: 456 EQHRDGETSDEEEEYEAKDIE-VEEVIDVSEEIL 488
+Q + + DE++EYE + E E+I EI+
Sbjct: 160 QQQQQQQQEDEDDEYEYVEEEGPPEIIWQGNEII 261
>TC216047 weakly similar to UP|IF3A_ARATH (Q9LD55) Eukaryotic translation
initiation factor 3 subunit 10 (eIF-3 theta) (Eukaryotic
translation initiation factor 3 large subunit) (eIF3a)
(p114), partial (22%)
Length = 664
Score = 32.0 bits (71), Expect = 0.65
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +2
Query: 412 EAEDQDESMLLSE-QEQEKCRMLKEEWDMWVNEWKWMHEEEKLQREQHRDGETSDEEEEY 470
E E++ +L S QE+EK R LK + + +HEEE+ ++ + + + +EEE
Sbjct: 398 EREERISRILQSRRQEREKMRKLKYYLKLEEERQQKLHEEEEARKREDAERKKKEEEERL 577
Query: 471 EAKDIEVEEVIDVSEEI 487
++EE+ + +I
Sbjct: 578 R----KLEEIAEKQRQI 616
>AW782061 similar to GP|10798644|emb AP2 domain-containing transcription
factor {Nicotiana tabacum}, partial (30%)
Length = 427
Score = 31.6 bits (70), Expect = 0.85
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 424 EQEQEKCRMLKEEWDMWVNEWKWMHEEEKLQREQ 457
E+E+E+C KEEW W EE++QR Q
Sbjct: 175 EEEEEECECRKEEW--------WASSEERVQRNQ 252
>TC204256 similar to PDB|1OD5_A.0|33357661|1OD5_A Chain A, Crystal Structure
Of Glycinin A3b4 Subunit Homohexamer. {Glycine max;} ,
partial (56%)
Length = 831
Score = 31.6 bits (70), Expect = 0.85
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +1
Query: 395 EKEEEIANNLKKYSKKYEAE----DQDESMLLSEQEQEKCRMLKEEWDMWVNEWKWMHEE 450
++EEE + L +SK + A+ ++D + L + E+ +++ E + V KW +E
Sbjct: 76 QQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKWQEQE 255
Query: 451 EKLQREQHRDGETSDEEEEYE 471
+ E DE+EEYE
Sbjct: 256 D----------EDEDEDEEYE 288
>TC225357 UP|Q39922 (Q39922) Gy5 protein, complete
Length = 1796
Score = 31.6 bits (70), Expect = 0.85
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +2
Query: 395 EKEEEIANNLKKYSKKYEAE----DQDESMLLSEQEQEKCRMLKEEWDMWVNEWKWMHEE 450
++EEE + L +SK + A+ ++D + L + E+ +++ E + V KW +E
Sbjct: 704 QQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKWQEQE 883
Query: 451 EKLQREQHRDGETSDEEEEYE 471
+ E DE+EEYE
Sbjct: 884 D----------EDEDEDEEYE 916
>TC207028 similar to UP|Q9LW95 (Q9LW95) KED, partial (13%)
Length = 490
Score = 31.2 bits (69), Expect = 1.1
Identities = 20/85 (23%), Positives = 39/85 (45%)
Frame = +1
Query: 395 EKEEEIANNLKKYSKKYEAEDQDESMLLSEQEQEKCRMLKEEWDMWVNEWKWMHEEEKLQ 454
+K+EE + LK+ K E ED + + + ++EK ++ K +
Sbjct: 199 DKDEE-TDTLKEKGKNDEGEDDEGNKKKKKDKKEK------------------EKDHKKE 321
Query: 455 REQHRDGETSDEEEEYEAKDIEVEE 479
++ +GE D + E +DI++EE
Sbjct: 322 KKDIEEGEKEDSKVEASVRDIDIEE 396
>TC229447 weakly similar to UP|Q7PC53 (Q7PC53) Chitinase B, partial (4%)
Length = 582
Score = 31.2 bits (69), Expect = 1.1
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +3
Query: 396 KEEEIANNLKKYSKKYEAEDQD-ESMLLSEQEQEKCRMLKEEWDMWVNEWKWMHEEEKLQ 454
K+ ++ ++ + +K E + Q+ E++ L +Q+ L++ M ++E K EEE
Sbjct: 102 KKRKLRSSNPEPTKPVEPQQQNHETVELDQQQPIPEPTLEDSNTMAIDEPKHEQEEEPQN 281
Query: 455 REQHRDGETSDEEEEYEAKDIEVE 478
E ++ E +EEE+ + ++ E E
Sbjct: 282 AESEQEVEEEEEEEDEQQEEQEPE 353
>TC208616 weakly similar to UP|Q41026 (Q41026) HMG 1 protein, partial (51%)
Length = 880
Score = 31.2 bits (69), Expect = 1.1
Identities = 27/92 (29%), Positives = 48/92 (51%), Gaps = 2/92 (2%)
Frame = +3
Query: 401 ANNLKKYSKKYEAEDQDESMLLSEQEQ--EKCRMLKEEWDMWVNEWKWMHEEEKLQREQH 458
+ ++K+ K EA ++ SM E++ +K LKEE++ + ++ +EE +
Sbjct: 285 SKDVKRVGK--EAGEKWRSMTDEEKKPYLDKVAELKEEYEKAMESYEAGQDEED---QTV 449
Query: 459 RDGETSDEEEEYEAKDIEVEEVIDVSEEILHF 490
D ETSD+E + IEVEE + + LH+
Sbjct: 450 SDKETSDKEAAAKEVAIEVEEELTDED*WLHY 545
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,482,762
Number of Sequences: 63676
Number of extensions: 279148
Number of successful extensions: 1885
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 1769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of query: 495
length of database: 12,639,632
effective HSP length: 101
effective length of query: 394
effective length of database: 6,208,356
effective search space: 2446092264
effective search space used: 2446092264
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0154.7