TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0154.6
         (227 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC229285                                                              365  e-102
TC223677                                                              129  1e-30
TC218011                                                               30  0.90
TC229842                                                               28  4.4
TC204203 homologue to UP|Q9SWS9 (Q9SWS9) Ribosomal protein S26, ...    27  5.8
CD401048 similar to GP|28416701|gb| At4g02100 {Arabidopsis thali...    27  9.9
TC204823 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, part...    27  9.9

>TC229285 
          Length = 1202

 Score =  365 bits (938), Expect = e-102
 Identities = 176/227 (77%), Positives = 199/227 (87%)
 Frame = +3

Query: 1   MAKLYLVVILSFLHSASTGSAATNTQIKVTNNPADKLVAAINENRTAYKVSELYDNAGLA 60
           M   +L+V LSF+++A+T     NTQIKVTNNPADKLV AINENRTA+KVS L DN GLA
Sbjct: 339 MTMWFLLVTLSFVYAAATA----NTQIKVTNNPADKLVVAINENRTAHKVSALTDNPGLA 506

Query: 61  CIALQYIKAYQGDCGAVGGPDAKKPPESQFAEVFAPNCGVKASSLAPITGRFLGCQTKYV 120
           CIALQYIKAYQG+C AVGG D KKPPES+FAEVFAPNCGV+AS+LAPITGRFL CQTKYV
Sbjct: 507 CIALQYIKAYQGECDAVGGSDGKKPPESRFAEVFAPNCGVEASTLAPITGRFLACQTKYV 686

Query: 121 HAPEAFSEVLIQNQRSLEILHSKNHTQVGAAVTGTDGGSPYFWCVLFSGGKPNSTFAFEG 180
           HAPEAFS++LI+NQ+SL+IL++ NHTQVGAAVTGTDGGSPYFWCVLFS GKPN TF FE 
Sbjct: 687 HAPEAFSDILIRNQQSLDILYNNNHTQVGAAVTGTDGGSPYFWCVLFSSGKPNKTFTFES 866

Query: 181 GVAKLTKPGCFSGANDECSGAHDWSPLSVMWLFAASVLIALGFAFPL 227
           GVAK+TKPGCFSGANDECSGA  WSPL+ MW+FA S+LIA+GFA  L
Sbjct: 867 GVAKITKPGCFSGANDECSGASYWSPLNEMWVFATSLLIAMGFALTL 1007


>TC223677 
          Length = 478

 Score =  129 bits (324), Expect = 1e-30
 Identities = 62/117 (52%), Positives = 78/117 (65%), Gaps = 1/117 (0%)
 Frame = +3

Query: 84  KPPESQFAEVFAPNCGVKASSLAPITGRFLGCQTKYVHAPEAFSEVLIQNQRSLEILHSK 143
           KPPE  F EVFAPNCGV+  +   ITG  +GCQ KY+    AFSEVLI++++SL +L +K
Sbjct: 33  KPPEDDFTEVFAPNCGVELPTFGTITGHIVGCQRKYLEPSLAFSEVLIKDEKSLSLLKNK 212

Query: 144 NHTQVGAAVTGTDGGSPYFWCVLFSGGKPNSTFAFEG-GVAKLTKPGCFSGANDECS 199
           +HT+VG  + G   G P+FWCVLFS GK NSTF  E  G     K GC+SG+   CS
Sbjct: 213 SHTEVGVGLVGLHKG-PFFWCVLFSNGKTNSTFVLENHGAGIQQKKGCYSGSTTPCS 380


>TC218011 
          Length = 1116

 Score = 30.0 bits (66), Expect = 0.90
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
 Frame = -1

Query: 153 TGTDGGSPYFWCVLFSGGKPNSTFAFEGGVAKLTK-------PGCFSGANDECSGAHDWS 205
           T  DG SP      F      +TF F GG  +          P C S  N   +G+   +
Sbjct: 648 TSGDGDSPEL--AFFEECDELATFKFRGGKLRSDSIC*VPRAPVCESRGNGGSNGSELEA 475

Query: 206 PLSVMWLFAASVL 218
           PLS  WL   S+L
Sbjct: 474 PLSTWWLLCKSLL 436


>TC229842 
          Length = 994

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 18/57 (31%), Positives = 27/57 (46%), Gaps = 3/57 (5%)
 Frame = +2

Query: 152 VTGTDGGSPYFWCVLF---SGGKPNSTFAFEGGVAKLTKPGCFSGANDECSGAHDWS 205
           VTG++G  P+    LF   SGG      A +  +   ++ G  S    ECS A+ W+
Sbjct: 365 VTGSNGYDPWSQGALFPSLSGGLKAQESATQNEMIYASQSGSASNHVHECSKANSWT 535


>TC204203 homologue to UP|Q9SWS9 (Q9SWS9) Ribosomal protein S26, partial
           (27%)
          Length = 449

 Score = 27.3 bits (59), Expect = 5.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 159 SPYFWCVLFSGGKPNSTFAFEGGVAKLTKPGCFSGANDECSGAHDWSPLS 208
           +P  W  L S G+ +S  +   G+ +LT+P C   A DE       SP+S
Sbjct: 159 APKTWNFLLSSGR-SSYSSRTWGLTRLTRPWCIIPAPDESLWRLTLSPIS 13


>CD401048 similar to GP|28416701|gb| At4g02100 {Arabidopsis thaliana},
           partial (14%)
          Length = 642

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 12/28 (42%), Positives = 18/28 (63%)
 Frame = +3

Query: 115 CQTKYVHAPEAFSEVLIQNQRSLEILHS 142
           CQT+++     F  +L+Q+QR  E LHS
Sbjct: 87  CQTRFLSPSIYFLFLLLQSQRERERLHS 170


>TC204823 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (66%)
          Length = 1596

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 19/56 (33%), Positives = 22/56 (38%), Gaps = 1/56 (1%)
 Frame = -1

Query: 162 FWCVLFSGGKPNSTFAFEGGVAKLTKPGCFS-GANDECSGAHDWSPLSVMWLFAAS 216
           FW     G  P  +FA  GG AKL+ P     G+  E        P S  W  A S
Sbjct: 462 FWLSTS*GKFPTKSFASSGGSAKLSSPASSPLGSQLERPAWVSLRPCSSSWKVAVS 295


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,503,158
Number of Sequences: 63676
Number of extensions: 146581
Number of successful extensions: 594
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of query: 227
length of database: 12,639,632
effective HSP length: 94
effective length of query: 133
effective length of database: 6,654,088
effective search space: 884993704
effective search space used: 884993704
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)