TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0151.7
         (1675 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CF922488                                                              204  3e-52
NP595172 polyprotein [Glycine max]                                    195  1e-49
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...   188  2e-47
NP395547 reverse transcriptase [Glycine max]                          154  3e-37
NP334778 reverse transcriptase [Glycine max]                          152  2e-36
NP395548 reverse transcriptase [Glycine max]                          144  3e-34
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...   137  3e-32
BI316922                                                              135  1e-31
TC211815                                                               72  1e-25
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...    89  1e-23
BG725601 similar to PIR|H86337|H86 protein F5M15.26 [imported] -...   103  6e-22
AW184779                                                               67  3e-20
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei...    84  5e-16
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...    83  9e-16
BI321666                                                               83  9e-16
BQ628592                                                               53  2e-12
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)          55  5e-11
BE802896                                                               63  1e-09
BI424213                                                               60  8e-09
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp...    59  2e-08

>CF922488 
          Length = 741

 Score =  204 bits (519), Expect = 3e-52
 Identities = 109/245 (44%), Positives = 149/245 (60%)
 Frame = +3

Query: 729 VKKANGKWLMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHP 788
           V K +GK  MCVDY DLN A PKD +PLP I+ LVD  +     S MD +SGY+QI++ P
Sbjct: 3   VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182

Query: 789 ADEDKTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVR 848
            D +KT F+T    +CY+ M FGLKN GATYQR M  +F   + + +EVY+DDMIVKS  
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362

Query: 849 GLDHHQDLEEAFGEIRKHNMRLNPEKCSFGVQGGKFLGFMITSRGIEINPDKCKAIQQMK 908
             +H  +L + F  +RK+ +RLNP KC F V+  K L F+ + RGIE++ +K K I +M 
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMA 542

Query: 909 NPSNVKEVQRLTGRIAALSRFLPKSGDRSFPFFKCLQKNAAFEWTAECEEAFVRLKELLS 968
            P   K+VQ   GR+  + RF+        P F  L KN   +W  +C  AF R+K+ L 
Sbjct: 543 KPHTEKQVQGFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLI 722

Query: 969 SPPIL 973
           +P +L
Sbjct: 723 NPHVL 737


>NP595172 polyprotein [Glycine max]
          Length = 4659

 Score =  195 bits (496), Expect = 1e-49
 Identities = 125/416 (30%), Positives = 203/416 (48%), Gaps = 2/416 (0%)
 Frame = +1

Query: 675  HRLALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANG 734
            H + L     PV     R    +   +++ + ++L    I+    P  L  +++VKK +G
Sbjct: 1759 HAIPLKQGSGPVKVRPYRYPHTQKDQIEKMIQEMLVQGIIQPSNSPFSLP-ILLVKKKDG 1935

Query: 735  KWLMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKT 794
             W  C DY  LN    KDS+P+P++D L+D   G +  S +D  SGYHQI + P D +KT
Sbjct: 1936 SWRFCTDYRALNAITVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKT 2115

Query: 795  AFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQ 854
            AF T   +Y +  MPFGL NA AT+Q LM+++F   + + + V+ DD+++ S    DH +
Sbjct: 2116 AFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLK 2295

Query: 855  DLEEAFGEIRKHNMRLNPEKCSFGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNPSNVK 914
             LE     +++H +     KCSFG     +LG  ++  G+ +   K +A+     P+NVK
Sbjct: 2296 HLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVK 2475

Query: 915  EVQRLTGRIAALSRFLPKSGDRSFPFFKCLQKNAAFEWTAECEEAFVRLKELLSSPPILS 974
            +++   G      RF+    + + P    LQK+ +F W  E E AFV+LK+ ++  P+LS
Sbjct: 2476 QLRGFLGLTGYYRRFIKSYANIAGPLTDLLQKD-SFLWNNEAEAAFVKLKKAMTEAPVLS 2652

Query: 975  KPMQGHPLHLYFAVSDSALSSVILQEGDGEHRVIYFVSHTLQGAEVRYKKIEKAALAVLV 1034
             P    P  L    S   + +V+ Q G   H + YF S  L     +     +  LA+  
Sbjct: 2653 LPDFSQPFILETDASGIGVGAVLGQNG---HPIAYF-SKKLAPRMQKQSAYTRELLAITE 2820

Query: 1035 TARRLRPYFQSFPVRVRTD-LPLRQVLQKPDMSGRLVAWSVELSEYGLQYD-KRGK 1088
               + R Y       +RTD   L+ ++ +   +    AW  +   Y  + + K GK
Sbjct: 2821 ALSKFRHYLLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGK 2988



 Score =  134 bits (336), Expect = 4e-31
 Identities = 149/580 (25%), Positives = 253/580 (42%), Gaps = 28/580 (4%)
 Frame = +1

Query: 1121 SNSSGSGTGVTLEGPGDLVLEQSLKFEFKATNNQAEYEALIA---GLKLAREVKIGS-LL 1176
            +++SG G G  L   G  +   S K   +     A    L+A    L   R   +G+  +
Sbjct: 2686 TDASGIGVGAVLGQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFI 2865

Query: 1177 IRTDSQLVENQVKGTFQVKDPN--LIKYLE*VRYLMTLFQEVVVEYVPRTENQRADALAK 1234
            IRTD + +++ +  + Q  +    L K+L           +  +EY P  +NQ ADAL++
Sbjct: 2866 IRTDQRSLKSLMDQSLQTPEQQAWLHKFLG---------YDFKIEYKPGKDNQAADALSR 3018

Query: 1235 LASTRKPDNNRSVIQETLAFPSIEGELMACVDRGATWMGPILSILAGDPAEVEQC--TKE 1292
            +                         ++A  +  + ++  + + L  DP  ++Q   T +
Sbjct: 3019 MF------------------------MLAWSEPHSIFLEELRARLISDP-HLKQLMETYK 3123

Query: 1293 QRREASHYTLIDGHLYRRGFSAPLLKCVPPEKYE---AIMSEVHEGMCASHIG-GRSLAC 1348
            Q  +ASHYT+ +G LY +       + V P + E    I+ E H      H G  R+LA 
Sbjct: 3124 QGADASHYTVREGLLYWKD------RVVIPAEEEIVNKILQEYHSSPIGGHAGITRTLA- 3282

Query: 1349 KVLRAGFYWPTLRKDCMDFVKKCKKCQVFADLSKAPPKELVTMSAPWPFAMW---GVDLV 1405
              L+A FYWP +++D   +++KC  CQ     +  P   L  +  P P  +W    +D +
Sbjct: 3283 -RLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL--PIPQQVWEDVAMDFI 3453

Query: 1406 GPFPIARSQMKFILVAVDYFTKWIEAEPLAKITSAKIV-NFYWKRIVCRFGIPRAIVSDN 1464
               P +   +  I+V +D  TK+    PL    ++K+V   +   IV   GIPR+IVSD 
Sbjct: 3454 TGLPNSFG-LSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVSDR 3630

Query: 1465 GTQFSSNQTREFCREMGIQMRFASVEHPQANGQVEYANRVILRGLRRRLKEAKGAWLEEL 1524
               F+S   +   +  G  +  +S  HPQ++GQ E  N+ +   LR    E    W++ L
Sbjct: 3631 DRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKGWVKAL 3810

Query: 1525 PVVLWSYNTTVQSTTRETPFRMTYGVDAMLPAEIDNFTWRTEPDFEGENQAN----MAAE 1580
            P   + YNT    +   TPFR  YG +   P  +       +   E   Q      + A+
Sbjct: 3811 PWAEFWYNTAYHMSLGMTPFRALYGRE---PPTLTRQACSIDDPAEVREQLTDRDALLAK 3981

Query: 1581 LDLLSETRDEAHIRETAMKQRVAAKFNSRVRVRDMQVGDLVL----KWRSGAS----GNK 1632
            L  ++ TR +  ++  A K+R+   F         Q+GD VL     +R  ++      K
Sbjct: 3982 LK-INLTRAQQVMKRQADKKRLDVSF---------QIGDEVLVKLQPYRQHSAVLRKNQK 4131

Query: 1633 LTPNWEGPYRIIKVLGNEAYHLEELDGRRLPRSFNGLSLR 1672
            L+  + GP++++  +G+ AY LE     R+   F+   L+
Sbjct: 4132 LSMRYFGPFKVLAKIGDVAYKLELPSAARIHPVFHVSQLK 4251


>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
          Length = 843

 Score =  188 bits (478), Expect = 2e-47
 Identities = 90/209 (43%), Positives = 125/209 (59%), Gaps = 1/209 (0%)
 Frame = +1

Query: 1294 RREASHYTLIDGHLYRRGFSAPLLKCVPPEKYEAIMSEVHEGMCASHIGGRSLACKVLRA 1353
            RR A+ + +    LY+R      L+CV   +   ++ EVHEG   +H  G ++A K+LRA
Sbjct: 217  RRLAAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGTHANGHAMARKILRA 396

Query: 1354 GFYWPTLRKDCMDFVKKCKKCQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPF-PIAR 1412
            G+YW T+  DC   V+KC KCQ FAD   APP  L  MS+PWPF+MWG+D++G   P A 
Sbjct: 397  GYYWLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSMWGIDVIGAIEPKAS 576

Query: 1413 SQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSNQ 1472
            +  +FILVA+DYFTKW+EA     +    +V F  K I+CR+G+PR I++DNGT  ++  
Sbjct: 577  NGHRFILVAIDYFTKWVEAASYTDVMRGVVVRFIKKEIICRYGLPRKIITDNGTNLNNKM 756

Query: 1473 TREFCREMGIQMRFASVEHPQANGQVEYA 1501
              E C E  IQ    +   P+ N  VE A
Sbjct: 757  MGEICEEFKIQHHNPTPYRPKMN*AVEVA 843


>NP395547 reverse transcriptase [Glycine max]
          Length = 762

 Score =  154 bits (389), Expect = 3e-37
 Identities = 89/248 (35%), Positives = 127/248 (50%), Gaps = 18/248 (7%)
 Frame = +1

Query: 701 VQQEVDKLLAAEFIREVKYPTWLANVVMVKKANG------------------KWLMCVDY 742
           V++EV KLL A  I  +   +W++ V +V K  G                  +W MC+DY
Sbjct: 1   VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180

Query: 743 TDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVN 802
             LN+A  KD YPLP +D ++   +       +D YSGY+QI + P D++KTAF      
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360

Query: 803 YCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGE 862
           + YR MPFGL NA  T+QR M  +F   V + +EV++DD         +   +LE+    
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540

Query: 863 IRKHNMRLNPEKCSFGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNPSNVKEVQRLTGR 922
             K N+ LN EKC F VQ G  LG  I+ RGIE+  +K   I ++  P NVK +    G 
Sbjct: 541 CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720

Query: 923 IAALSRFL 930
           +    RF+
Sbjct: 721 VGFYRRFI 744


>NP334778 reverse transcriptase [Glycine max]
          Length = 431

 Score =  152 bits (383), Expect = 2e-36
 Identities = 71/142 (50%), Positives = 96/142 (67%)
 Frame = +3

Query: 738 MCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFM 797
           MCVDY DLN+A PKD++PLP ID L+   +   L S MD +SGY+QI+M P D +KT F+
Sbjct: 6   MCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTFI 185

Query: 798 TARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLE 857
           T    +CY+ M FGLKN GATY R M  +F   + + +E YVD+MI KS    +H  +L+
Sbjct: 186 TLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNLQ 365

Query: 858 EAFGEIRKHNMRLNPEKCSFGV 879
             FG++RK+ +RLNP KC FG+
Sbjct: 366 NLFGQLRKYRLRLNPRKCVFGL 431


>NP395548 reverse transcriptase [Glycine max]
          Length = 762

 Score =  144 bits (363), Expect = 3e-34
 Identities = 85/248 (34%), Positives = 131/248 (52%), Gaps = 18/248 (7%)
 Frame = +1

Query: 701 VQQEVDKLLAAEFIREVKYPTWLANVVMVKKANG------------------KWLMCVDY 742
           V++EV KLL    I  +    W++ V++V K  G                   W +C+DY
Sbjct: 1   VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180

Query: 743 TDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVN 802
             LN+A  KD +PLP +D +++  +G+     +DAY GY+QI + P D++K AF      
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360

Query: 803 YCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGE 862
           + YR +PFGL NA  T+Q  M  +FA  V +++EV++DD  V         + LE     
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540

Query: 863 IRKHNMRLNPEKCSFGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNPSNVKEVQRLTGR 922
             + N+ LN EKC F V+ G  LG  I++RGIE++  K   I+++  PSNVK ++   G+
Sbjct: 541 CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720

Query: 923 IAALSRFL 930
                RF+
Sbjct: 721 ARFYRRFI 744


>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
          Length = 402

 Score =  137 bits (346), Expect = 3e-32
 Identities = 66/132 (50%), Positives = 92/132 (69%)
 Frame = +2

Query: 773 SLMDAYSGYHQIRMHPADEDKTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVG 832
           S MD +SGY+QI M   D +KT F+T    + YR M FGLKN GATYQR M  +F   + 
Sbjct: 5   SFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMMH 184

Query: 833 RNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCSFGVQGGKFLGFMITSR 892
           + +EVYVDDMI KS    +H  +L + FG ++K+ ++LNP KC+FGV+ GK LGF+++ +
Sbjct: 185 KEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVSQK 364

Query: 893 GIEINPDKCKAI 904
           GIEI+P+K KA+
Sbjct: 365 GIEIDPEKVKAL 400


>BI316922 
          Length = 405

 Score =  135 bits (341), Expect = 1e-31
 Identities = 61/134 (45%), Positives = 92/134 (68%)
 Frame = +3

Query: 1331 EVHEGMCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKKCKKCQVFADLSKAPPKELVT 1390
            E+H G+C  H   + +  +VLR G+Y  T+RK C ++VKKC++C  F ++S    +EL  
Sbjct: 3    EMHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHN 182

Query: 1391 MSAPWPFAMWGVDLVGPFPIARSQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRI 1450
            + APWPFA+ GVD++ PFP+++ Q+K++LV +D FTKWIE E +A I+ A +  F  + I
Sbjct: 183  IVAPWPFAI*GVDILRPFPLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RNI 362

Query: 1451 VCRFGIPRAIVSDN 1464
            VC FGIP  ++SDN
Sbjct: 363  VC*FGIPNTLISDN 404


>TC211815 
          Length = 704

 Score = 72.4 bits (176), Expect(2) = 1e-25
 Identities = 49/143 (34%), Positives = 73/143 (50%), Gaps = 3/143 (2%)
 Frame = +2

Query: 1536 QSTTRETPFRMTYGVDAMLPAEIDNFTWRTEPDFEGENQANMAAELDLLSETRDEAHIRE 1595
            QSTT ETPF + YG+  MLP E+           E  N+  +  +LDL+ + R++  I  
Sbjct: 230  QSTTHETPF*LIYGISVMLPIEVGEVFL*RHYFAEV*NKEALQIDLDLIKQVREDTVIMT 409

Query: 1596 TAMKQRVAAKFNSRVRVRDMQVG---DLVLKWRSGASGNKLTPNWEGPYRIIKVLGNEAY 1652
             A KQR+   FNS++       G   + + +       +K T N EGP++I     N AY
Sbjct: 410  *AFKQRMTRCFNSKLPSTV*GRGPSMEGIQRSLEVLVRSKFTTN*EGPFKIRHNSKNGAY 589

Query: 1653 HLEELDGRRLPRSFNGLSLRYYY 1675
             LEEL G+ + R +N + L+ YY
Sbjct: 590  KLEELSGKVVLRIWNSMHLKVYY 658



 Score = 64.3 bits (155), Expect(2) = 1e-25
 Identities = 30/67 (44%), Positives = 43/67 (63%)
 Frame = +3

Query: 1463 DNGTQFSSNQTREFCREMGIQMRFASVEHPQANGQVEYANRVILRGLRRRLKEAKGAWLE 1522
            DNG QF++ +  EF   + I+ R  SV+HPQ N + E AN+VIL  L++ L  A G W+E
Sbjct: 3    DNGLQFTNRKLNEFPSGLNIKHRVTSVKHPQTNRRAEAANKVILGDLKKLLDGANGRWVE 182

Query: 1523 ELPVVLW 1529
            +L  +LW
Sbjct: 183  DLVEILW 203


>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
          Length = 803

 Score = 89.0 bits (219), Expect(2) = 1e-23
 Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 5/199 (2%)
 Frame = +2

Query: 1164 LKLAREVKIGSLLIRTDSQLVENQVKGTFQVKDPNLIKYLE*VRYLMTLFQEVVVEYVPR 1223
            ++ A +  +  L +  DS LV +Q++G  + +DPNLI Y   ++ L   F E+   +V  
Sbjct: 206  VQAAIDSNVKLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA* 385

Query: 1224 TENQRADALAKLASTRK--PDNNRSVIQETLAFPSIEGELMACVDRGATWMGPILSILAG 1281
             ENQ ADALA L S  +  P  +   I+           L+     G  W   I   +  
Sbjct: 386  EENQMADALATLVSMFQLTPHGDLPYIEFRCRGRPAHCCLVEEERDGKPWYFDIKRYVES 565

Query: 1282 DPAEVEQCTKEQRRE---ASHYTLIDGHLYRRGFSAPLLKCVPPEKYEAIMSEVHEGMCA 1338
                +E    ++RR+   A+ + +    LY+R     LL CV  ++ E ++ EVHEG   
Sbjct: 566  KEYPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLGEVHEGSFG 745

Query: 1339 SHIGGRSLACKVLRAGFYW 1357
            +H  G ++A K+LRAG+YW
Sbjct: 746  THSNGHAMARKILRAGYYW 802



 Score = 40.8 bits (94), Expect(2) = 1e-23
 Identities = 19/62 (30%), Positives = 32/62 (50%)
 Frame = +1

Query: 1098 VVELTPDRFERVDTQWTLFVDGSSNSSGSGTGVTLEGPGDLVLEQSLKFEFKATNNQAEY 1157
            ++ L  ++ +    +W ++ D +SN  G G G  L  P +  +  + +  F  TNN AEY
Sbjct: 7    IMALFEEKLDEDRDKWIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEY 186

Query: 1158 EA 1159
            EA
Sbjct: 187  EA 192


>BG725601 similar to PIR|H86337|H86 protein F5M15.26 [imported] - Arabidopsis
           thaliana, partial (1%)
          Length = 285

 Score =  103 bits (257), Expect = 6e-22
 Identities = 50/91 (54%), Positives = 66/91 (71%)
 Frame = -3

Query: 675 HRLALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANG 734
           H+LA+   VK V+Q +R++  ++ + V QEV KL  A FIR++ Y T L +VVMVKK NG
Sbjct: 277 HKLAICNDVKLVTQRKRKIREERCQTV*QEVVKLAIASFIRDINYST*LFSVVMVKKPNG 98

Query: 735 KWLMCVDYTDLNKACPKDSYPLPSIDSLVDG 765
           KW +C DY DLN ACPKD+YPLP+ID + DG
Sbjct: 97  KWRICTDYIDLN*ACPKDAYPLPNIDHMTDG 5


>AW184779 
          Length = 432

 Score = 67.4 bits (163), Expect(2) = 3e-20
 Identities = 30/69 (43%), Positives = 41/69 (58%)
 Frame = +1

Query: 1307 LYRRGFSAPLLKCVPPEKYEAIMSEVHEGMCASHIGGRSLACKVLRAGFYWPTLRKDCMD 1366
            LY+R     LL+CV   + E ++ EVHEG   +H    ++A K+LR G+YW T+  DC  
Sbjct: 16   LYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTMESDCCI 195

Query: 1367 FVKKCKKCQ 1375
             V KC KCQ
Sbjct: 196  HVWKCHKCQ 222



 Score = 51.2 bits (121), Expect(2) = 3e-20
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 10/70 (14%)
 Frame = +3

Query: 1384 PPKELVTMSAPWPFA---------MWGVDLVGPF-PIARSQMKFILVAVDYFTKWIEAEP 1433
            P +  + M  P P+          MWG+D++G   P A +   FILVA+DYFTKW+EA  
Sbjct: 219  PVRPSLIMLTPHPYL*MSWQHLGHMWGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAVS 398

Query: 1434 LAKITSAKIV 1443
             A +T + ++
Sbjct: 399  YASVTRSVVI 428



 Score = 30.0 bits (66), Expect = 8.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 1375 QVFADLSKAPPKELVTMSAPWPF 1397
            Q FAD   APP  L  ++APWP+
Sbjct: 224  QTFADNVNAPPIPLNVLAAPWPY 292


>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
            partial (8%)
          Length = 1320

 Score = 84.0 bits (206), Expect = 5e-16
 Identities = 41/101 (40%), Positives = 59/101 (57%)
 Frame = +3

Query: 629  GDRTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSVKPVSQ 688
            G R +KIGT +T      L  LL +  D+FAWS +DMPG+  + + HRL LNP   PV Q
Sbjct: 1014 GKREVKIGTGITAPIREELIILLRDYQDIFAWSYQDMPGLSSDIVQHRLPLNPECSPVKQ 1193

Query: 689  LRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMV 729
              RR+  +    +++EV K   A F+   +YP W+AN+V +
Sbjct: 1194 KLRRMKPETSLKIKEEVKK*FDAGFLAVARYPKWVANIVPI 1316


>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
          Length = 669

 Score = 83.2 bits (204), Expect = 9e-16
 Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 6/183 (3%)
 Frame = +1

Query: 1499 EYANRVILRGLRRRLKEAKGAWLEELPVVLWSYNTTVQSTTRETPFRMTYGVDAMLPAEI 1558
            E AN+ I + +++     K  W E LP  L  Y T+V+++T  TPF + YG++A+LP E+
Sbjct: 1    EAANKNIKKIIQKMTVSYKD-WHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEV 177

Query: 1559 DNFTWRTEPDF---EGENQANMAAELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVRDM 1615
            +  + R   +    E E       +L+L+   R  A       +QR+ + F+ +V +R  
Sbjct: 178  EVPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKF 357

Query: 1616 QVGDLVLKWRSGA---SGNKLTPNWEGPYRIIKVLGNEAYHLEELDGRRLPRSFNGLSLR 1672
              GDLVLK  S A      K  PN+EGP+ + +     A  L  +DG  LP   N   ++
Sbjct: 358  HEGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDVVK 537

Query: 1673 YYY 1675
             YY
Sbjct: 538  RYY 546


>BI321666 
          Length = 430

 Score = 83.2 bits (204), Expect = 9e-16
 Identities = 43/121 (35%), Positives = 67/121 (54%)
 Frame = +2

Query: 1346 LACKVLRAGFYWPTLRKDCMDFVKKCKKCQVFADLSKAPPKELVTMSAPWPFAMWGVDLV 1405
            ++  VL++ FY P++ KD     + C KCQ    +SK     L T+     F  WG+D V
Sbjct: 2    ISTNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEIFDYWGIDFV 181

Query: 1406 GPFPIARSQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNG 1465
            GPFP + S  ++ILV VDY +KW+EA    K  +  ++ F  K+I  R G+P  ++ + G
Sbjct: 182  GPFPPSFSN-EYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLIDNGG 358

Query: 1466 T 1466
            +
Sbjct: 359  S 361


>BQ628592 
          Length = 423

 Score = 52.8 bits (125), Expect(2) = 2e-12
 Identities = 24/71 (33%), Positives = 42/71 (58%), Gaps = 2/71 (2%)
 Frame = -1

Query: 944  LQKNAAFEWTAECEEAFVRLKELLSSPPILSKPMQGHPLHLYFAVSDSALSSVILQEGDG 1003
            L KN A  W +  +EAF ++K+ L++P +L  P+ G P  LY  + D ++  V++Q  D 
Sbjct: 423  LPKNQAILWNSNYQEAFEKIKQSLANPSVLMPPVTGRPFLLYMTMLDESMGCVLVQHDDS 244

Query: 1004 --EHRVIYFVS 1012
              + + IY++S
Sbjct: 243  GKKEQAIYYLS 211



 Score = 39.3 bits (90), Expect(2) = 2e-12
 Identities = 17/64 (26%), Positives = 36/64 (55%), Gaps = 1/64 (1%)
 Frame = -3

Query: 1019 EVRYKKIEKAALAVLVTARRLRPYFQSFPVRVRTDL-PLRQVLQKPDMSGRLVAWSVELS 1077
            ++ Y  +E+    ++  + RLR Y  S    + + + P++ + +KP ++GR+  W V LS
Sbjct: 193  KMNYSMLERTCCTLVWASHRLRQYMLSHTTWLISKMDPVKYIFEKPALTGRIARWQVLLS 14

Query: 1078 EYGL 1081
            E+ +
Sbjct: 13   EFNI 2


>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
          Length = 589

 Score = 55.5 bits (132), Expect(2) = 5e-11
 Identities = 36/122 (29%), Positives = 59/122 (47%)
 Frame = +1

Query: 912  NVKEVQRLTGRIAALSRFLPKSGDRSFPFFKCLQKNAAFEWTAECEEAFVRLKELLSSPP 971
            +V +++   G  +   RF+P     + P  + ++KN AF W  + E+AF  LKE L+  P
Sbjct: 109  SVGDIRSFHGLASFYRRFVPNFSTVASPLNELVKKNMAFTWGEKQEQAFALLKEKLTKAP 288

Query: 972  ILSKPMQGHPLHLYFAVSDSALSSVILQEGDGEHRVIYFVSHTLQGAEVRYKKIEKAALA 1031
            +L+ P       L    S   + +V+LQ   G H + YF S  L  A + Y   +K   A
Sbjct: 289  VLALPDFSKTFELECDASGVGVRAVLLQ---GGHPIAYF-SEKLHSATLNYPTYDKELYA 456

Query: 1032 VL 1033
            ++
Sbjct: 457  LI 462



 Score = 32.0 bits (71), Expect(2) = 5e-11
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 884 FLGFMITSRGIEINPDKCKAIQQMKNPSNVKEV 916
           F GF++   G++++P+K KAIQ+   P  V E+
Sbjct: 23  FSGFVVGRNGVQMDPEKIKAIQEWPPP*KVWEI 121


>BE802896 
          Length = 416

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 41/133 (30%), Positives = 58/133 (42%)
 Frame = -2

Query: 921  GRIAALSRFLPKSGDRSFPFFKCLQKNAAFEWTAECEEAFVRLKELLSSPPILSKPMQGH 980
            G      RF+      + P    LQK   F++  +C+ AF  LK  L + PI+  P    
Sbjct: 406  GHAGFYRRFIRDFRKVALPLSNLLQKEVEFDFNDKCK*AFDCLKRALITTPIIQAPDWTA 227

Query: 981  PLHLYFAVSDSALSSVILQEGDGEHRVIYFVSHTLQGAEVRYKKIEKAALAVLVTARRLR 1040
            P  L    S+ AL  V+ Q+ D   RVIY+ S TL  A+  Y   EK  LA++    +  
Sbjct: 226  PFELMCDASNYALGVVLAQKIDKLPRVIYYSSRTLDAAQANYTTTEKELLAIVFALEKFH 47

Query: 1041 PYFQSFPVRVRTD 1053
             Y     + V  D
Sbjct: 46   SYLLGTRIIVYID 8


>BI424213 
          Length = 426

 Score = 60.1 bits (144), Expect = 8e-09
 Identities = 28/80 (35%), Positives = 48/80 (60%)
 Frame = +1

Query: 1479 EMGIQMRFASVEHPQANGQVEYANRVILRGLRRRLKEAKGAWLEELPVVLWSYNTTVQST 1538
            ++G ++ F++  HPQ +GQ +  NR +   LR  LK    +W E LP V ++YN  V  T
Sbjct: 31   KLGTKLLFSTTCHPQTDGQTKVVNRSLSTLLRALLKGNHKSWDEYLPHVEFAYNRGVHRT 210

Query: 1539 TRETPFRMTYGVDAMLPAEI 1558
            T+++PF + YG + + P ++
Sbjct: 211  TKQSPFEVVYGFNPLTPLDL 270


>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
            {Arabidopsis thaliana}, partial (13%)
          Length = 378

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
 Frame = -3

Query: 1478 REMGIQMRFASVEHPQANGQVEYANRVILRGLRRRLKEAKGAWLEELPVVLWSYNTTVQS 1537
            ++ G+  R ++  HPQ NGQ E +NR I R L + ++ ++  W   L   LW++ T  ++
Sbjct: 361  KKYGVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHRTAYKA 182

Query: 1538 TTRETPFRMTYGVDAMLPAEIDNFT-WRTEPDFEGENQANMAAELDL--LSETRDEAH 1592
                +P+R+ +G    LP EI++   W  +      +QA    +L L  L E R EA+
Sbjct: 181  PIGMSPYRVVFGKACHLPVEIEHKAYWAVKTCNFSMDQAGEERKLQLSELDEIRLEAY 8


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,419,322
Number of Sequences: 63676
Number of extensions: 864913
Number of successful extensions: 4163
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 4080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4142
length of query: 1675
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1565
effective length of database: 5,635,272
effective search space: 8819200680
effective search space used: 8819200680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)