TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0144.9
         (269 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW460173                                                               32  0.23
TC205363 similar to UP|Q9ZRR7 (Q9ZRR7) SAP1 protein, partial (59%)     27  0.66
BU760572                                                               28  3.3
TC229123                                                               28  4.3
TC217839 similar to UP|Q9LM23 (Q9LM23) T10O22.24, partial (26%)        28  5.7
TC203824 similar to UP|Q9V3T8 (Q9V3T8) SR family splicing factor...    28  5.7
TC204476 similar to UP|Q84QI6 (Q84QI6) Auxin response factor-lik...    27  7.4
TC230446 weakly similar to UP|Q6V9S3 (Q6V9S3) RPE1 protein, part...    27  9.7
TC226973 similar to UP|Q6QU76 (Q6QU76) SMC3, partial (36%)             27  9.7

>AW460173 
          Length = 544

 Score = 32.3 bits (72), Expect = 0.23
 Identities = 28/116 (24%), Positives = 58/116 (49%)
 Frame = +2

Query: 126 LANLQSFLVDASATFHQVKDVGQAVSFKEAKVSAGKAQVAAMKEDFKKFTARKVLIADEI 185
           LA L++ L D     H+++D+   VS  E K+   KAQ   +K +  K    +  + ++I
Sbjct: 185 LARLRTRLSDRD---HEIRDLKTEVSDAEQKILP*KAQ---LKSEMSKVLEERTHLEEQI 346

Query: 186 SEVDIKLEELHREITKLEKKRADLVEEGPAVKDQLDVLTKDSKALIISTKEVIKEL 241
            E + +   +  +I +++ ++ D+ E   A++ ++ +L    KA     + +I EL
Sbjct: 347 IEWESRGRCIEDDIRRIQSEKMDMEE---ALRGEIQLL----KAGFDQRENIINEL 493


>TC205363 similar to UP|Q9ZRR7 (Q9ZRR7) SAP1 protein, partial (59%)
          Length = 1352

 Score = 26.6 bits (57), Expect(2) = 0.66
 Identities = 15/46 (32%), Positives = 24/46 (51%), Gaps = 9/46 (19%)
 Frame = +2

Query: 53  SPPRQADATAETAQSSGVANSQQIEE---------SMGRLKAIVFA 89
           +PP  A A+A  A   GVA+ + + E         S+GR++ +V A
Sbjct: 86  TPPAPAPASAAAAADHGVADQRSLAERGWVPHAVPSLGRVRGVVAA 223



 Score = 22.7 bits (47), Expect(2) = 0.66
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 1  MPPPKSTATVQPSP 14
          +PPP +T T  P+P
Sbjct: 59 LPPPPATTTTPPAP 100


>BU760572 
          Length = 449

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 20/80 (25%), Positives = 38/80 (47%)
 Frame = +2

Query: 185 ISEVDIKLEELHREITKLEKKRADLVEEGPAVKDQLDVLTKDSKALIISTKEVIKELEID 244
           I ++  K   L +E T L ++ + L +   + + +L  L +   A ++  +E +KEL   
Sbjct: 80  IEDLQNKSLHLEKETTGLNEENSKLNQGIASYESKLSDLQEKLSAALVEKEETVKELLTL 259

Query: 245 QAVKKDLDAKIATFADCLNS 264
           + V K+L    +     LNS
Sbjct: 260 KDVIKELGTAHSAEVQTLNS 319


>TC229123 
          Length = 1034

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +3

Query: 145 DVGQAVSFKEAKVSAGKAQVAAMKEDFKKFTARKVLIADEISEVDIKLEELHREITKLEK 204
           D    +  KEA+V     ++  +    ++  + K     +ISE+  K+ E+  E  +L K
Sbjct: 333 DYADKLRTKEAEVEKANEKIKILVSSMEQLQSEKYEKDSKISELQSKMAEMEAETKRLNK 512

Query: 205 KRADLVEE 212
           + + L  E
Sbjct: 513 EISGLSVE 536


>TC217839 similar to UP|Q9LM23 (Q9LM23) T10O22.24, partial (26%)
          Length = 1532

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 55  PRQADATAETAQSSGVANSQQIEESMGRLKAIVFASGFLDQIQADPQA 102
           P+     AE  + SG  +   +EE   RL  +  AS F+D+   D  A
Sbjct: 902 PKNMLVEAELGRLSGTEDDLTVEEYEARLTDVTMASKFIDETGIDALA 1045


>TC203824 similar to UP|Q9V3T8 (Q9V3T8) SR family splicing factor SC35
           (CG5442-PB) (LD32469p), partial (6%)
          Length = 1532

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 14/37 (37%), Positives = 22/37 (58%)
 Frame = +2

Query: 165 AAMKEDFKKFTARKVLIADEISEVDIKLEELHREITK 201
           AA KE+ KK TA    +  + ++   K+EEL RE+ +
Sbjct: 338 AARKEEIKKLTAELDGLRSDGADRSEKIEELQREVAQ 448



 Score = 26.9 bits (58), Expect = 9.7
 Identities = 27/104 (25%), Positives = 49/104 (46%), Gaps = 4/104 (3%)
 Frame = +2

Query: 153 KEAKVSAGKAQVAAMKEDFKKFTARKVLIADEISEVDIKLEELHRE----ITKLEKKRAD 208
           KE ++   + +V    E+ +K  A K    DE+ +  ++LEE  RE    +T LE     
Sbjct: 785 KEREIKGYRQKV----EELEKVAAEKKTELDELVKQKLRLEEALRESEEKVTGLESSILQ 952

Query: 209 LVEEGPAVKDQLDVLTKDSKALIISTKEVIKELEIDQAVKKDLD 252
           L +E            K+++ +IIS  E  K +E  +++ + L+
Sbjct: 953 LRKE-----------AKEAERVIISLNE--KAVETVESIDRGLN 1045


>TC204476 similar to UP|Q84QI6 (Q84QI6) Auxin response factor-like protein,
            partial (43%)
          Length = 2243

 Score = 27.3 bits (59), Expect = 7.4
 Identities = 20/81 (24%), Positives = 36/81 (43%), Gaps = 2/81 (2%)
 Frame = +3

Query: 1    MPPPKSTATVQPSPQTKGGSSSHVSSEKLDTLFEEDPLAALDDF--LDGTLEWDSPPRQA 58
            MPPP +  T   SP ++   S HVS++  + +  +D    L  F  + G +  +    Q 
Sbjct: 978  MPPPPAPQTQYQSPCSRELMSKHVSAKTCEAVKPKDGDCKLFGFSLISGPIVPEPSLSQR 1157

Query: 59   DATAETAQSSGVANSQQIEES 79
            + +    Q    A+ Q+  E+
Sbjct: 1158 NVSEPAGQMHLTAHQQRTSEN 1220


>TC230446 weakly similar to UP|Q6V9S3 (Q6V9S3) RPE1 protein, partial (12%)
          Length = 803

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 2  PPPKSTATVQPSPQTKGGSSSHVSS 26
          PPP S+++  P P +  GSS+  SS
Sbjct: 26 PPPASSSSTTPPPSSTAGSSTPPSS 100


>TC226973 similar to UP|Q6QU76 (Q6QU76) SMC3, partial (36%)
          Length = 1707

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
 Frame = +3

Query: 154 EAKVSAGKAQ--VAAMKEDFKKFTARKVLIADEISEVDIKLEELHREITKLEKKRADLVE 211
           EA +S+  A   VA  +  +++ +  K+L+ D I ++    E ++    +++K       
Sbjct: 252 EAVISSADADSLVADAESKWQELSDAKILVDDAIGQLRSVTESINDRTRQIKK------- 410

Query: 212 EGPAVKDQLDVLTKDSKALIISTKEVIKELEIDQAVKKDLDAKIATFA 259
               +KD+L+ L           +E  KELE  Q+ K    AK   +A
Sbjct: 411 ----IKDELNKLKSLEDEYERKLQEDAKELEQLQSKKNTYAAKEEEYA 542


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.311    0.127    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,967,167
Number of Sequences: 63676
Number of extensions: 82552
Number of successful extensions: 491
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of query: 269
length of database: 12,639,632
effective HSP length: 96
effective length of query: 173
effective length of database: 6,526,736
effective search space: 1129125328
effective search space used: 1129125328
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)