BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0143b.7
(485 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CF922568 42 8e-04
TC204966 similar to UP|HMD1_ARATH (P14891) 3-hydroxy-3-methylglu... 40 0.002
TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C2... 40 0.002
AW185139 similar to GP|4107037|dbj| HMG-CoA reductase {Cucumis m... 40 0.002
TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g4... 38 0.009
TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 37 0.015
TC231523 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {A... 37 0.015
TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 37 0.015
TC229415 homologue to UP|Q9Y1J5 (Q9Y1J5) RNA binding protein Puf... 37 0.020
TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Pro... 37 0.026
TC228275 weakly similar to UP|Q9M3D0 (Q9M3D0) Lipase-like protei... 36 0.044
TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 36 0.044
TC217994 homologue to GB|AAB04607.1|1448917|ATHTHSY threonine sy... 35 0.057
TC213991 similar to UP|Q6H976 (Q6H976) STYLOSA protein, partial ... 35 0.075
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 35 0.098
TC205425 similar to UP|O23718 (O23718) 20S proteasome beta subun... 33 0.22
TC226776 similar to GB|AAP68287.1|31711862|BT008848 At1g02720 {A... 33 0.22
TC229926 similar to UP|Q93VB2 (Q93VB2) AT3g62770/F26K9_200, part... 33 0.22
AI735951 33 0.22
TC212752 weakly similar to UP|Q7M4A3 (Q7M4A3) Spermatid-specific... 25 3.9
>CF922568
Length = 387
Score = 41.6 bits (96), Expect = 8e-04
Identities = 36/111 (32%), Positives = 47/111 (41%), Gaps = 14/111 (12%)
Frame = +1
Query: 2 PKSRKRGATPTTFASQKRAKGAGELTVGDPSPAKSASQRVEMQQ----GGDQGGTTPIPV 57
PK+ +RGA F + + KGA + T GDP A + GG G TP PV
Sbjct: 1 PKTPQRGAKGFFFFPKGKKKGAKKPTTGDPKGIPRARPP*TLMNSRPPGGPPKGKTPHPV 180
Query: 58 EMALA-KKTSRKRSSRKSGSSSSHHSKSSTSSSPLKES---------GPKR 98
E L K + K+ G + S S +SP K+S GPKR
Sbjct: 181 EAKLGNSKGAPKKLGENRGKTVSRGKIFSPPNSPQKKSRKQKRETPGGPKR 333
>TC204966 similar to UP|HMD1_ARATH (P14891)
3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
(HMG-CoA reductase 1) (HMGR1) , partial (30%)
Length = 753
Score = 40.4 bits (93), Expect = 0.002
Identities = 30/94 (31%), Positives = 46/94 (48%)
Frame = +1
Query: 49 QGGTTPIPVEMALAKKTSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPR 108
+GGT P+P+ + S S S S SS S +S+S++ S + + PR
Sbjct: 130 RGGTPPLPLPRPPTRSLSLFTSPTPSSSRSSSPSPTSSSTAGATRSAATPLSTLSLC-PR 306
Query: 109 ATWFSSKPPPVVLSSSSSSLESSNSSLDSNESDP 142
+ FS PP SS+SS+ +S SS S+ + P
Sbjct: 307 SPPFSPSSPP---SSTSSASSASTSSSPSSHAPP 399
Score = 33.5 bits (75), Expect = 0.22
Identities = 27/101 (26%), Positives = 41/101 (39%), Gaps = 2/101 (1%)
Frame = +1
Query: 2 PKSRKRGATPTTFASQKRAKGAGELTVGDPSPAKSASQRVEMQQ--GGDQGGTTPIPVEM 59
P + +RG TP + + T PS ++S+S G + TP+
Sbjct: 115 PSTTRRGGTPPLPLPRPPTRSLSLFTSPTPSSSRSSSPSPTSSSTAGATRSAATPLSTLS 294
Query: 60 ALAKKTSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVG 100
+ SS S +SS+ S +STSSSP + P G
Sbjct: 295 LCPRSPPFSPSSPPSSTSSA--SSASTSSSPSSHAPPTTPG 411
>TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23), partial
(7%)
Length = 735
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/67 (41%), Positives = 34/67 (49%)
Frame = -3
Query: 76 SSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSSSSSLESSNSSL 135
SSSS S SS+SSSP S + S SS PPP+ SSS S SS SS
Sbjct: 571 SSSSSSSSSSSSSSPSSSSSSLSLSSSS---------SSLPPPLASGSSSGSPSSSPSSP 419
Query: 136 DSNESDP 142
+++ S P
Sbjct: 418 ENSSSSP 398
>AW185139 similar to GP|4107037|dbj| HMG-CoA reductase {Cucumis melo},
partial (15%)
Length = 447
Score = 40.0 bits (92), Expect = 0.002
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Frame = +3
Query: 49 QGGTTPI--PVEMALAKKTSRKRSSRKSGS----SSSHHSKSSTSSSPLKESGPKRVGMS 102
+GGT P+ P ++L+ TS RSS +S S SSS + ++++PL S
Sbjct: 66 RGGTLPLPRPPTLSLSLSTSPTRSSSRSSSPLLTSSSTAGATRSAATPLSTSS------- 224
Query: 103 KMAVPRATWFSSKPPPVVLSSSSSSLESSNSSLDSNESDP 142
PR+ FS PP SS+SS+ +S SS S+ + P
Sbjct: 225 --LSPRSPPFSPSSPP---SSTSSASSASTSSSPSSHAPP 329
>TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g47970
{Arabidopsis thaliana;} , partial (39%)
Length = 867
Score = 38.1 bits (87), Expect = 0.009
Identities = 31/79 (39%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = -2
Query: 74 SGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKP----PPVVLSSSSSSLE 129
S S S S SS+SSSP S AV R S P P SSSSSS
Sbjct: 539 SDFSPSSSSTSSSSSSPFSSGSKSLDASSSSAVTRGRIRYSVPKSASSPCSSSSSSSSSS 360
Query: 130 SSNSSLDSNESDPVWDKLT 148
SS+S S+ S P W L+
Sbjct: 359 SSSSLSSSSGSPPRWTSLS 303
Score = 37.7 bits (86), Expect = 0.012
Identities = 28/70 (40%), Positives = 37/70 (52%)
Frame = -2
Query: 71 SRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSSSSSLES 130
S S SSS S SS+SSS L S + ++ ++ SS PP S +SSS S
Sbjct: 407 SASSPCSSSSSSSSSSSSSSLSSSSGSPPRWTSLSSSSSSSSSSSPP----SGASSSSSS 240
Query: 131 SNSSLDSNES 140
S+SSL S+ S
Sbjct: 239 SSSSLSSSSS 210
Score = 37.0 bits (84), Expect = 0.020
Identities = 31/74 (41%), Positives = 39/74 (51%), Gaps = 2/74 (2%)
Frame = -2
Query: 69 RSSRKSGSSSSHHSKSSTSSSPLKESG--PKRVGMSKMAVPRATWFSSKPPPVVLSSSSS 126
+S+ SSSS S SS+SSS SG P+ +S ++ SS PP SSSSS
Sbjct: 410 KSASSPCSSSSSSSSSSSSSSLSSSSGSPPRWTSLSS----SSSSSSSSSPPSGASSSSS 243
Query: 127 SLESSNSSLDSNES 140
S SS SS S +S
Sbjct: 242 SSSSSLSSSSSKDS 201
Score = 28.9 bits (63), Expect = 5.4
Identities = 35/119 (29%), Positives = 47/119 (39%)
Frame = -2
Query: 22 GAGELTVGDPSPAKSASQRVEMQQGGDQGGTTPIPVEMALAKKTSRKRSSRKSGSSSSHH 81
GA + + S + S+S G+ + + A R R S +SS
Sbjct: 545 GASDFSPSSSSTSSSSSSPFS-------SGSKSLDASSSSAVTRGRIRYSVPKSASSPCS 387
Query: 82 SKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSSSSSLESSNSSLDSNES 140
S SS+SSS S + S + PR T SS SSSSSS S S S+ S
Sbjct: 386 SSSSSSSS----SSSSSLSSSSGSPPRWTSLSS-------SSSSSSSSSPPSGASSSSS 243
Score = 28.9 bits (63), Expect(2) = 0.65
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = -2
Query: 4 SRKRGATPTTFASQKRAKGAGELTVGDP-SPAKSASQRVEMQQGGDQGGTTPIPVEMALA 62
S+ A+ ++ ++ R + + + P S + S+S G+ P ++ +
Sbjct: 476 SKSLDASSSSAVTRGRIRYSVPKSASSPCSSSSSSSSSSSSSSLSSSSGSPPRWTSLSSS 297
Query: 63 KKTSRKRSSRKSGSSSSHHSKSSTSSSPLKES 94
+S S SSSS S SS SSS K+S
Sbjct: 296 SSSSSSSSPPSGASSSSSSSSSSLSSSSSKDS 201
Score = 21.6 bits (44), Expect(2) = 0.65
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 122 SSSSSSLESSNSSLDSNES 140
SSSSSS S+ SS DS S
Sbjct: 195 SSSSSSPSSTTSSSDSYSS 139
>TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 942
Score = 37.4 bits (85), Expect = 0.015
Identities = 29/73 (39%), Positives = 32/73 (43%)
Frame = -2
Query: 70 SSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSSSSSLE 129
SS S SSSS S SS SSSPL S S S PP L+S SSS
Sbjct: 644 SSSSSSSSSSPSSSSSPSSSPLSSSSSSPPSSSSSP-------SLSLPPAPLASGSSSGS 486
Query: 130 SSNSSLDSNESDP 142
+S+S S P
Sbjct: 485 ASSSPSPEKSSSP 447
Score = 32.7 bits (73), Expect = 0.37
Identities = 32/92 (34%), Positives = 38/92 (40%), Gaps = 5/92 (5%)
Frame = -2
Query: 65 TSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATW-----FSSKPPPV 119
+S SS SSSS S +SSS S +S P A+ SS P P
Sbjct: 641 SSSSSSSSSPSSSSSPSSSPLSSSSSSPPSSSSSPSLSLPPAPLASGSSSGSASSSPSPE 462
Query: 120 VLSSSSSSLESSNSSLDSNESDPVWDKLTFYF 151
SS SSS SS SS S+ S + L F
Sbjct: 461 KSSSPSSSS*SSASSSSSSSSPSSSESLASLF 366
>TC231523 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Arabidopsis
thaliana;} , partial (32%)
Length = 878
Score = 37.4 bits (85), Expect = 0.015
Identities = 32/132 (24%), Positives = 56/132 (42%)
Frame = +2
Query: 2 PKSRKRGATPTTFASQKRAKGAGELTVGDPSPAKSASQRVEMQQGGDQGGTTPIPVEMAL 61
P SR+R +T +++R + T S A +A++ ++P P +
Sbjct: 50 PASRRRAPARSTSRTRRRGTSSRTKTTRPSSCAATAAR------------SSPAPTTTSS 193
Query: 62 AKKTSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVL 121
+ RSS + SSS S+ SSP + P+R S + P T S P P
Sbjct: 194 PTSAATPRSSPSTAPSSS---PPSSPSSPPSATPPRRTSPSSTSSPVRTSTPSSPSPTTT 364
Query: 122 SSSSSSLESSNS 133
+S++ +++S
Sbjct: 365 TSNT*CTSTTDS 400
>TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 850
Score = 37.4 bits (85), Expect = 0.015
Identities = 33/81 (40%), Positives = 40/81 (48%), Gaps = 3/81 (3%)
Frame = -1
Query: 66 SRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPP--PVVLSS 123
S SS S SSSS S SS SSS + +A ++ +S PP P SS
Sbjct: 523 SSSSSSSPSSSSSSSPSSSSLSSSSSSSPSSSSLPPPPLASGSSSESASSPPSSPEKSSS 344
Query: 124 SSSSLESSNS-SLDSNESDPV 143
SSSSL SS S +L S+ S V
Sbjct: 343 SSSSLSSSPSFTLSSSSSSSV 281
>TC229415 homologue to UP|Q9Y1J5 (Q9Y1J5) RNA binding protein PufA, partial
(3%)
Length = 1099
Score = 37.0 bits (84), Expect = 0.020
Identities = 28/97 (28%), Positives = 39/97 (39%)
Frame = +2
Query: 39 QRVEMQQGGDQGGTTPIPVEMALAKKTSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKR 98
Q+ + Q+GG P+ ++ + H KSS SSSP R
Sbjct: 230 QQQQQQEGGGNVSLPPMIIDSVPVAHHLHHHHHQHQHQHQHHGGKSSGSSSPSTAGKRLR 409
Query: 99 VGMSKMAVPRATWFSSKPPPVVLSSSSSSLESSNSSL 135
+ M +T P L SSSSS+ +SNSSL
Sbjct: 410 LFGVNMECASSTTSEDHPKCFSLLSSSSSMANSNSSL 520
>TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23),
partial (8%)
Length = 581
Score = 36.6 bits (83), Expect = 0.026
Identities = 27/70 (38%), Positives = 34/70 (48%)
Frame = -3
Query: 65 TSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSS 124
+S SS S SSSS S S +SSS S + +A ++ +S PP SS
Sbjct: 525 SSSSSSSSSSSSSSSPSSSSLSSSSSSSSSSSSSLSPPPLASGSSSESASSPPSSPEKSS 346
Query: 125 SSSLESSNSS 134
SSS SS SS
Sbjct: 345 SSSSSSSPSS 316
Score = 35.8 bits (81), Expect = 0.044
Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = -3
Query: 57 VEMALAKKTSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKP 116
V + + +S SS S SS S S SS+SSS P G S + +S P
Sbjct: 528 VSSSSSSSSSSSSSSSPSSSSLSSSSSSSSSSSSSLSPPPLASGSSSES-------ASSP 370
Query: 117 P--PVVLSSSSSSLESSNSSLDSNESDPVWDKLTFYFNSK 154
P P SSSSSS S+ S S+ S L F+S+
Sbjct: 369 PSSPEKSSSSSSSSSPSSPSFTSSSSSSSSVSLASLFSSE 250
Score = 33.1 bits (74), Expect = 0.29
Identities = 28/74 (37%), Positives = 35/74 (46%), Gaps = 6/74 (8%)
Frame = -3
Query: 75 GSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSSSSSLESS--- 131
G SSS S SS+SSS S P +S + ++ SS PP + S SSS SS
Sbjct: 531 GVSSSSSSSSSSSSS----SSPSSSSLSSSSSSSSSSSSSLSPPPLASGSSSESASSPPS 364
Query: 132 ---NSSLDSNESDP 142
SS S+ S P
Sbjct: 363 SPEKSSSSSSSSSP 322
Score = 32.7 bits (73), Expect = 0.37
Identities = 31/92 (33%), Positives = 36/92 (38%), Gaps = 7/92 (7%)
Frame = -3
Query: 62 AKKTSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKP----- 116
+ +S SS S SSSS S SS S PL S + P + SS
Sbjct: 495 SSSSSPSSSSLSSSSSSSSSSSSSLSPPPLASGSSSESASSPPSSPEKSSSSSSSSSPSS 316
Query: 117 PPVVLSSSSSSLESSNSSLDSNESDPV--WDK 146
P SSSSSS S S S P+ W K
Sbjct: 315 PSFTSSSSSSSSVSLASLFSSEVCFPLHGWSK 220
Score = 30.8 bits (68), Expect = 1.4
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Frame = -3
Query: 49 QGGTTPIPVEMALAKKTSRKRSSRKSGSSSSHHSKSSTSS---SPLKESGPKRVGMSKMA 105
+GG + + +S S S SSSS S SS+SS PL S +
Sbjct: 543 EGGCGVSSSSSSSSSSSSSSSPSSSSLSSSSSSSSSSSSSLSPPPLASGSSSESASSPPS 364
Query: 106 VPR----ATWFSSKPPPVVLSSSSSSLESSNSSLDSNE 139
P ++ SS P SSSSSS S +SL S+E
Sbjct: 363 SPEKSSSSSSSSSPSSPSFTSSSSSSSSVSLASLFSSE 250
>TC228275 weakly similar to UP|Q9M3D0 (Q9M3D0) Lipase-like protein, partial
(25%)
Length = 1153
Score = 35.8 bits (81), Expect = 0.044
Identities = 27/76 (35%), Positives = 38/76 (49%)
Frame = +3
Query: 70 SSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSSSSSLE 129
SSRKS S+S +T SSP S +S + ATW S PPP SS+S+
Sbjct: 210 SSRKSASTSP---PGATPSSPPTSSATAAPTVS--SATSATWTKSPPPPSPSSSTSAIAT 374
Query: 130 SSNSSLDSNESDPVWD 145
+ +S S+ + P W+
Sbjct: 375 PTKTSRHSSSASP-WE 419
>TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 857
Score = 35.8 bits (81), Expect = 0.044
Identities = 30/72 (41%), Positives = 36/72 (49%)
Frame = -1
Query: 71 SRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSSSSSLES 130
S S SSSS S S+SSS S P S ++P SS PP SS SS E+
Sbjct: 605 SSSSSSSSSSSSSPSSSSSSSPLSSPSS-SSSPSSLPSPLASSSGSPP----SSPSSPEN 441
Query: 131 SNSSLDSNESDP 142
S+SS S+ S P
Sbjct: 440 SSSSPSSSSSGP 405
Score = 35.8 bits (81), Expect = 0.044
Identities = 33/73 (45%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = -1
Query: 70 SSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSS--SSSS 127
SS S SSSS SS+SSSPL S P S ++P SS PP SS +SSS
Sbjct: 602 SSSSSSSSSSSSPSSSSSSSPL--SSPSS-SSSPSSLPSPLASSSGSPPSSPSSPENSSS 432
Query: 128 LESSNSSLDSNES 140
SS+SS S+ S
Sbjct: 431 SPSSSSSGPSSSS 393
>TC217994 homologue to GB|AAB04607.1|1448917|ATHTHSY threonine synthase
{Arabidopsis thaliana;} , partial (34%)
Length = 578
Score = 35.4 bits (80), Expect = 0.057
Identities = 35/126 (27%), Positives = 51/126 (39%), Gaps = 2/126 (1%)
Frame = +2
Query: 11 PTTFASQKRAKGAGELTVGDPSPAKSASQRVEMQQGGDQGGTTPIPVEMALAKKT--SRK 68
PTT S + T+ P + + S R T P PV + + T
Sbjct: 29 PTTTTSSRPNTSLSMPTLPPPRRSPTRSTR---------SSTAPNPVASSTSSTTWTPSS 181
Query: 69 RSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSSSSSL 128
S+ +G++SS + + SG K+ G S PR+T S PP V +SS
Sbjct: 182 ASTASTGATSSTRAWAKPPGLTAPASGAKKNGSS----PRSTTTISSPPSRVTPTSSGPS 349
Query: 129 ESSNSS 134
S+NSS
Sbjct: 350 VSANSS 367
>TC213991 similar to UP|Q6H976 (Q6H976) STYLOSA protein, partial (12%)
Length = 440
Score = 35.0 bits (79), Expect = 0.075
Identities = 24/65 (36%), Positives = 31/65 (46%), Gaps = 2/65 (3%)
Frame = +3
Query: 234 EPSSRQLQTSPQQLQSSPQQLQQGARVALLSPHAKG--GSASSKMAASSHTSGERLSALL 291
+ +Q Q QQ QS PQQ Q R LL+ A G G+ + A ++ ERL L
Sbjct: 51 QQQQQQQQPQSQQQQSQPQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPL 230
Query: 292 VEDPL 296
DPL
Sbjct: 231 QRDPL 245
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 34.7 bits (78), Expect = 0.098
Identities = 29/85 (34%), Positives = 40/85 (46%), Gaps = 1/85 (1%)
Frame = -3
Query: 55 IPVEMALAKKTSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSS 114
+P + +S SS S S SS S SS+S SP + + P S + + SS
Sbjct: 576 VPKSSSSPCSSSSSSSSSSSSSESSSESLSSSSGSPPRWTSPSSSSSSSSSSSPPSGASS 397
Query: 115 KPPPVVL-SSSSSSLESSNSSLDSN 138
+ SSSSSS SS+SS S+
Sbjct: 396 SSSSLSSPSSSSSSSSSSSSSSASS 322
Score = 34.3 bits (77), Expect = 0.13
Identities = 35/115 (30%), Positives = 46/115 (39%)
Frame = -3
Query: 74 SGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSSSSSLESSNS 133
S S S S SS+SSSP S AV + S P SSSS SS+S
Sbjct: 699 SAFSQSSSSTSSSSSSPFSSGSKSLDASSSSAVSKGRIRYSVPK----SSSSPCSSSSSS 532
Query: 134 SLDSNESDPVWDKLTFYFNSKPIAWQHPGCEPYYTRECRDNLSNFPPQDAQNMPS 188
S S+ S+ + L+ S P W P + + S+ PP A + S
Sbjct: 531 SSSSSSSESSSESLSSSSGSPP-RWTSP------SSSSSSSSSSSPPSGASSSSS 388
Score = 33.5 bits (75), Expect = 0.22
Identities = 33/125 (26%), Positives = 51/125 (40%)
Frame = -3
Query: 3 KSRKRGATPTTFASQKRAKGAGELTVGDPSPAKSASQRVEMQQGGDQGGTTPIPVEMALA 62
K R R + P + +S + + S ++S+S+ + G T+P +
Sbjct: 597 KGRIRYSVPKSSSSPCSSSSSSS---SSSSSSESSSESLSSSSGSPPRWTSPS------S 445
Query: 63 KKTSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLS 122
+S SS SG+SSS S SS SSS S S ++ SS L+
Sbjct: 444 SSSSSSSSSPPSGASSSSSSLSSPSSSSSSSSSSSSSSASSTTSSTDSYSSSSSSTKTLT 265
Query: 123 SSSSS 127
S SS+
Sbjct: 264 SFSST 250
Score = 33.1 bits (74), Expect = 0.29
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Frame = -3
Query: 34 AKSASQRVEMQQGGDQGGTTPIPVEMALAKKTSRKRSS-RKSGSSSSHHSKSSTSSSPLK 92
++S+S G+ + + A R R S KS SS S SS+SSS
Sbjct: 690 SQSSSSTSSSSSSPFSSGSKSLDASSSSAVSKGRIRYSVPKSSSSPCSSSSSSSSSSSSS 511
Query: 93 ESGPKRVGMSKMAVPRATWFSSKPPPVVLSSSSSSLESSNSSLDSNES 140
ES + + S + PR T S SSSS SS+SS S S
Sbjct: 510 ESSSESLSSSSGSPPRWT-----------SPSSSSSSSSSSSPPSGAS 400
Score = 32.7 bits (73), Expect = 0.37
Identities = 30/112 (26%), Positives = 50/112 (43%), Gaps = 5/112 (4%)
Frame = -3
Query: 34 AKSASQRVEMQQGGDQGGTTPIPVEMALAKKTSRKRSSRKSGSSSSHH-----SKSSTSS 88
+ SA + ++ + ++P + + +S SS +S SSSS S SS+SS
Sbjct: 615 SSSAVSKGRIRYSVPKSSSSPCSSSSSSSSSSSSSESSSESLSSSSGSPPRWTSPSSSSS 436
Query: 89 SPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSSSSSLESSNSSLDSNES 140
S S P S ++ + SS SS+SS+ S++S S+ S
Sbjct: 435 SSSSSSPPSGASSSSSSLSSPSSSSSSSSSSSSSSASSTTSSTDSYSSSSSS 280
Score = 32.0 bits (71), Expect = 0.64
Identities = 40/143 (27%), Positives = 53/143 (36%), Gaps = 4/143 (2%)
Frame = -3
Query: 15 ASQKRAKGAGELTVGDP----SPAKSASQRVEMQQGGDQGGTTPIPVEMALAKKTSRKRS 70
AS A G + P SP S+S + + + + TS S
Sbjct: 621 ASSSSAVSKGRIRYSVPKSSSSPCSSSSSSSSSSSSSESSSESLSSSSGSPPRWTSPSSS 442
Query: 71 SRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSSSSSLES 130
S S SSS SS+SSS ++ P ++ SS SSSSSS S
Sbjct: 441 SSSSSSSSPPSGASSSSSS--------------LSSPSSSSSSSS------SSSSSSASS 322
Query: 131 SNSSLDSNESDPVWDKLTFYFNS 153
+ SS DS S K F+S
Sbjct: 321 TTSSTDSYSSSSSSTKTLTSFSS 253
>TC205425 similar to UP|O23718 (O23718) 20S proteasome beta subunit PBG1 ,
partial (92%)
Length = 1076
Score = 33.5 bits (75), Expect = 0.22
Identities = 24/78 (30%), Positives = 38/78 (47%), Gaps = 3/78 (3%)
Frame = -1
Query: 48 DQGGTTPIPVEMALAKKTSRKRSSRKSGSSSSHHSKSSTSSSPLKES--GPKRVGMSK-M 104
+ GG T P + L + S+ H S + T SS +K S +R+G+++
Sbjct: 770 ENGGKTVAPSSVILDIWILLTADLSRYKSTRMHFSSNLTPSSKVKFSCHSSRRIGLAR*F 591
Query: 105 AVPRATWFSSKPPPVVLS 122
P ATW SSK P++L+
Sbjct: 590 PSPVATWLSSKLMPIMLT 537
>TC226776 similar to GB|AAP68287.1|31711862|BT008848 At1g02720 {Arabidopsis
thaliana;} , partial (68%)
Length = 1307
Score = 33.5 bits (75), Expect = 0.22
Identities = 48/176 (27%), Positives = 68/176 (38%), Gaps = 15/176 (8%)
Frame = +2
Query: 31 PSPAKSASQRVEMQQGGDQGGTTPIPVEMALAKKTSRKRSSRKSGSSSSHHSKSSTSSSP 90
PSP SA+ T+P P + + S S+ S + S+ + SSTSSSP
Sbjct: 656 PSPPPSATP---------PSSTSPSPSTSSTSAAPSPP-STPSSNTPSARRTSSSTSSSP 805
Query: 91 LKESGPKR-------VGMSKMAVPRATWFSSKPPPVVLSSSSS------SLESSN-SSLD 136
S P S +PR++ S PP S++ S SL SSN +S
Sbjct: 806 KPTSNPSSNPPSLN*TSRSITLIPRSSAT*SPPPSDKPSNNPSTTPEITSLTSSNPASRG 985
Query: 137 SNESDPVW-DKLTFYFNSKPIAWQHPGCEPYYTRECRDNLSNFPPQDAQNMPSPAR 191
S P+W T + P+ P P + + S P + SPAR
Sbjct: 986 LYTSTPIWFSSTTLPSSGAPV*VLEPLAPP--STATPTSPSTSPQGSGRTCASPAR 1147
>TC229926 similar to UP|Q93VB2 (Q93VB2) AT3g62770/F26K9_200, partial (46%)
Length = 829
Score = 33.5 bits (75), Expect = 0.22
Identities = 35/162 (21%), Positives = 56/162 (33%), Gaps = 8/162 (4%)
Frame = +1
Query: 11 PTTFASQKRAKGAGELTVGDPSPAKSASQRVEMQQGGDQGGTTPIPVEMALAKKTSRKRS 70
P++ + R GA P P +AS T P + + S +
Sbjct: 244 PSSTSPSIRTPGAS------PPPPTAASASTTATPSARSSAATSAPAAASASSTCSSAAT 405
Query: 71 SRKSGSSSSH--------HSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLS 122
S S +++ S S T++ P + S+ + AT SS P
Sbjct: 406 SSPSSAAAPPPTPATLPTRS*SGTTTCPAASASSPSARRSRASASAATESSSSSPT---R 576
Query: 123 SSSSSLESSNSSLDSNESDPVWDKLTFYFNSKPIAWQHPGCE 164
SSS++ S S + TF+ + P W PGC+
Sbjct: 577 SSSTTSPISKCCTKSRPLQTLKAYATFHMSPPPWCWSAPGCK 702
Score = 33.1 bits (74), Expect = 0.29
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Frame = +1
Query: 2 PKSRKRGATPTTFASQKRAKGAGELTVGDPSPAKSASQRVEMQQGGDQGGTTPIPVEMAL 61
P +R AT A+ + + T PS A + GTT P A
Sbjct: 328 PSARSSAATSAPAAASASSTCSSAAT-SSPSSAAAPPPTPATLPTRS*SGTTTCPAASAS 504
Query: 62 AKKTSRKRSSRKSG--SSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPP 117
+ R R+S + SSSS ++SS+++SP+ + K + + AT+ S PP
Sbjct: 505 SPSARRSRASASAATESSSSSPTRSSSTTSPISKCCTKSRPLQTLKA-YATFHMSPPP 675
>AI735951
Length = 436
Score = 33.5 bits (75), Expect = 0.22
Identities = 38/140 (27%), Positives = 51/140 (36%)
Frame = +3
Query: 1 MPKSRKRGATPTTFASQKRAKGAGELTVGDPSPAKSASQRVEMQQGGDQGGTTPIPVEMA 60
+P SR + T S + + PSP+ S S + +P P
Sbjct: 33 IPASRSSHGSLLTPLSPPLSSLVSPSSATSPSPSSSPSS---LSHPSHTAS*SPSP---- 191
Query: 61 LAKKTSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVV 120
S SS S SS S + S +SS+PL +GP +S P P+
Sbjct: 192 ----PSTTSSSSSSPSSCSWAAPSPSSSTPLTSAGPS---------------ASHPTPIP 314
Query: 121 LSSSSSSLESSNSSLDSNES 140
SSS SS S SN S
Sbjct: 315 PGPSSSGPTSSTSPKSSNSS 374
>TC212752 weakly similar to UP|Q7M4A3 (Q7M4A3) Spermatid-specific protein T2
precursor, partial (35%)
Length = 533
Score = 24.6 bits (52), Expect(2) = 3.9
Identities = 19/52 (36%), Positives = 24/52 (45%), Gaps = 5/52 (9%)
Frame = -1
Query: 10 TPTTFASQKRAKGAGELTVGDPSPAKSASQRVEMQ--QGG---DQGGTTPIP 56
TPT RA EL G A+S S RVE + +GG +QG +P
Sbjct: 347 TPTYVLCHPRADEVNELEGGIEIQAESCSDRVENKAVKGGAVVEQGTARTVP 192
Score = 23.1 bits (48), Expect(2) = 3.9
Identities = 22/73 (30%), Positives = 28/73 (38%)
Frame = -2
Query: 63 KKTSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLS 122
+ T+ S S S S H+ SS+SSS S
Sbjct: 178 RHTNSDSLSPSSSPSQSSHTSSSSSSS--------------------------------S 95
Query: 123 SSSSSLESSNSSL 135
SSSSSL SS+SS+
Sbjct: 94 SSSSSLSSSSSSI 56
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.309 0.125 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,983,339
Number of Sequences: 63676
Number of extensions: 289125
Number of successful extensions: 3480
Number of sequences better than 10.0: 164
Number of HSP's better than 10.0 without gapping: 2461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3010
length of query: 485
length of database: 12,639,632
effective HSP length: 101
effective length of query: 384
effective length of database: 6,208,356
effective search space: 2384008704
effective search space used: 2384008704
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0143b.7