TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0142.9
         (341 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarit...    59  4e-09

>TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarity to
           ribosomal protein, partial (24%)
          Length = 689

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 27/62 (43%), Positives = 40/62 (63%)
 Frame = +3

Query: 129 LQRILHASDMRGFPGMIESIDYMHWEWKNCPKAWEGQFTRGDKGTTTVILEAVASHDLWI 188
           +Q ++   ++RGF  M+ SIDY+HW+ K C  AW+GQ+  GD G  T++L+ V S  L I
Sbjct: 12  IQYLMQICEIRGFQSMLGSIDYLHWK*KTCLVAWKGQYCHGD-GPPTIMLKVVVSQYLRI 188

Query: 189 WH 190
            H
Sbjct: 189 *H 194


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.340    0.148    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,444,122
Number of Sequences: 63676
Number of extensions: 222005
Number of successful extensions: 1542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of query: 341
length of database: 12,639,632
effective HSP length: 98
effective length of query: 243
effective length of database: 6,399,384
effective search space: 1555050312
effective search space used: 1555050312
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 59 (27.3 bits)