TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0140.12
         (414 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC214121 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive eleme...    35  0.081
TC217577 similar to UP|Q9ASS7 (Q9ASS7) AT5g36940/MLF18_60, parti...    34  0.14
TC218110 homologue to UP|SUI1_SALBA (O48650) Protein translation...    33  0.24
TC214297 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive eleme...    32  0.52
BG507654                                                               30  1.5
TC210281 weakly similar to UP|Q8GU29 (Q8GU29) Glycin-rich RNA bi...    30  2.6
TC225038 similar to UP|Q41025 (Q41025) Histone H1, partial (67%)       29  3.4
TC215094 weakly similar to UP|Q6RJY7 (Q6RJY7) Elicitor-inducible...    29  4.4
TC229132 weakly similar to UP|Q944E4 (Q944E4) Cellulose synthase...    28  5.8
TC233341 similar to UP|Q8PWH4 (Q8PWH4) Conserved protein, partia...    28  5.8
TC231526 similar to UP|PME_MEDSA (Q42920) Pectinesterase precurs...    28  5.8

>TC214121 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive element binding
           factor 4-like protein, partial (50%)
          Length = 965

 Score = 34.7 bits (78), Expect = 0.081
 Identities = 26/74 (35%), Positives = 38/74 (51%)
 Frame = -1

Query: 63  EVGVSIGLCFFLGNAVAGALYVLGAVETFLKAVPAAGIFRETITQVNGTTIAQPIESPSS 122
           EVG   G     G  V GA  VLG VE    A P AG+    +T + G  +A P   P +
Sbjct: 278 EVGFGFGAAEVAGGGVIGAGGVLGGVE---GAEPDAGLL-AGVTDLGG--VAAPWSLPDA 117

Query: 123 HDLQIYGIVVTIVL 136
            ++++ GIVV +++
Sbjct: 116 AEVKLVGIVVWLLV 75


>TC217577 similar to UP|Q9ASS7 (Q9ASS7) AT5g36940/MLF18_60, partial (44%)
          Length = 1475

 Score = 33.9 bits (76), Expect = 0.14
 Identities = 34/164 (20%), Positives = 68/164 (40%), Gaps = 5/164 (3%)
 Frame = +3

Query: 229 GIMAGSNRSSSLKDTQRSIPLGTLAATLVTTFMYLVSVIMFGALATREKLLTDRLLTATV 288
           G  A ++ +  +K+ QR +PLG   +  +   +Y++  I+   L     +  D  +++  
Sbjct: 9   GFDAVASTAEEVKNPQRDLPLGIGGSLFLCCGLYMLVSIVIVGLVPYYAINPDTPISSAF 188

Query: 289 A-----WPFPSLIKIGIILSTMGAALQSLTGAPRLLAAIANDDILPILKYFKVADGSEPH 343
           A     W    +I  G   +   + +  +   PR+L A+A D +LP            P 
Sbjct: 189 ADNGMQWA-AYVINGGAFTALCASLMGGILPQPRILMAMARDGLLPPFFSDINKCSQVPV 365

Query: 344 VATLFTAFLCSGCVVIGNLDLITPTVTMFFLLCYAGVNLSCFLL 387
            +T+ T  + S       +  +   V++  LL +  V +S  +L
Sbjct: 366 KSTIVTGLVASLLAFSMEVSELAGMVSVGTLLAFTMVAISVLIL 497


>TC218110 homologue to UP|SUI1_SALBA (O48650) Protein translation factor SUI1
           homolog, complete
          Length = 876

 Score = 33.1 bits (74), Expect = 0.24
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +3

Query: 346 TLFTAFLCSGCVVIGNLDLI----TPTVTMFFLLCY-AGVNLSCFLLDLLDAPSWRP 397
           T+F   L S  ++I   D +    TP +  F LL +   V L CFL+  LD P+W P
Sbjct: 597 TVFLPILDSYYLIIYGKDNMSASKTPVLNKFVLLFFHVQVTLGCFLIWALDVPNWEP 767


>TC214297 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive element binding
           factor 4-like protein, partial (51%)
          Length = 996

 Score = 32.0 bits (71), Expect = 0.52
 Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 2/126 (1%)
 Frame = -2

Query: 18  GGTLLLVALCGTCTFLTAISLSAIATNGAMKGGGPYYLIGRALGPE--VGVSIGLCFFLG 75
           GG L   AL GT  F   + +  +  N           +G  +G E  VG   G     G
Sbjct: 398 GGGLHGAALAGTVRFNVNVVVLLVEVN-----------VGVVVGEEGEVGFGFGATEVSG 252

Query: 76  NAVAGALYVLGAVETFLKAVPAAGIFRETITQVNGTTIAQPIESPSSHDLQIYGIVVTIV 135
             V GA  +LG VE    A P AG+    +  + G  IA P   P S ++ +  I   +V
Sbjct: 251 GDVVGAGGILGGVE---GAEPDAGLL-SRVADLGG--IAAPGALPDSAEVNLVCIAWLLV 90

Query: 136 LCFIVF 141
           L   VF
Sbjct: 89  LVGQVF 72


>BG507654 
          Length = 411

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +3

Query: 229 GIMAGSNRSSSLKDTQRSIPLGTLAATLVTTFMYLVSVIMFGALATREKL 278
           G  + S  +  +KD  +S+P+G + + L+TT +Y +  +    +    K+
Sbjct: 156 GYDSASTMAEEVKDPFKSLPIGIVGSVLITTLLYCLMALSLCMMVPYNKI 305


>TC210281 weakly similar to UP|Q8GU29 (Q8GU29) Glycin-rich RNA binding
           protein, partial (16%)
          Length = 680

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 26/75 (34%), Positives = 31/75 (40%), Gaps = 7/75 (9%)
 Frame = -3

Query: 17  IGGTLLLVALCGTCTFLTAISLSAIATNGAMKGGGPY-------YLIGRALGPEVGVSIG 69
           IGG  L +A  G C +   I  +AI T  A  GG P        Y     L P V     
Sbjct: 309 IGGLELTLAFPGCCIYPGFIGNAAIGTTPAGNGGWPVLPFWESAYFTTIFLPPSVFSRSS 130

Query: 70  LCFFLGNAVAGALYV 84
           + FF  +AV   LYV
Sbjct: 129 MAFFAASAV---LYV 94


>TC225038 similar to UP|Q41025 (Q41025) Histone H1, partial (67%)
          Length = 862

 Score = 29.3 bits (64), Expect = 3.4
 Identities = 28/91 (30%), Positives = 43/91 (46%), Gaps = 3/91 (3%)
 Frame = -2

Query: 14  MGGIGGTLLLVALCGTCTFLTAISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFF 73
           + G+  T L   L G       + L+ +A   A+     ++L   ALG E G+   L  F
Sbjct: 600 LAGLAATFLAATLAGL-----DLGLAVVAAALALGLATAFFLGVAALGLEAGLVAALVGF 436

Query: 74  LG-NAVAGALYVLGAVETF--LKAVPAAGIF 101
           LG  A+ GA  V  +++ F  L ++PAA  F
Sbjct: 435 LGAAALTGAGLVGASLKEFFTLTSLPAATDF 343


>TC215094 weakly similar to UP|Q6RJY7 (Q6RJY7) Elicitor-inducible protein
           EIG-J7, partial (71%)
          Length = 995

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
 Frame = -1

Query: 95  VPAAGIFRETITQVNGTTIAQPIESPSSHDLQIYGIVVTIVL------CFIVF 141
           VPA    R   + VNGT  +    SPS+ D+++  + V + L      CF VF
Sbjct: 371 VPAVVRTRSVRSNVNGTDGSVKTGSPSAEDVEVAALEVVVALAHQAAPCFEVF 213


>TC229132 weakly similar to UP|Q944E4 (Q944E4) Cellulose synthase-like
           protein OsCslE1, partial (29%)
          Length = 824

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -1

Query: 293 PSLIKIGIILSTMGAALQSLTGAPRLLAAIANDDILPILKYFKVADGSEPHVATLFTAFL 352
           PSL+    ++ST+G     L   P L   I N  + PI+ +       EP +  L  A L
Sbjct: 731 PSLVGCSTLISTLGTV*TILLSHPPLDTHILNPSLFPIVCFPHSCSLQEPLIVVLVLAGL 552


>TC233341 similar to UP|Q8PWH4 (Q8PWH4) Conserved protein, partial (7%)
          Length = 714

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 12/31 (38%), Positives = 18/31 (57%)
 Frame = -1

Query: 376 CYAGVNLSCFLLDLLDAPSWRPRWKFHHWSL 406
           C++ +  S  LL LLD+   + R + HHW L
Sbjct: 117 CFSALGFSRHLLPLLDSDFPQQRQRHHHWVL 25


>TC231526 similar to UP|PME_MEDSA (Q42920) Pectinesterase precursor  (Pectin
           methylesterase) (PE) (P65) , partial (56%)
          Length = 966

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 29/113 (25%), Positives = 48/113 (41%), Gaps = 3/113 (2%)
 Frame = +3

Query: 197 YQKTNDAGIPEPDGSVSWNFNALVGLFFPAVTGIMAGSNRSSSLKDTQRS---IPLGTLA 253
           Y   N   +P P   ++W  +   G F P ++     S  S   K T R    +      
Sbjct: 411 YSPANPTCLP*PPRLLTWEDH---GGFTPRLSSWTPKSTTSLFPKGTWRGWEVLSRTQAP 581

Query: 254 ATLVTTFMYLVSVIMFGALATREKLLTDRLLTATVAWPFPSLIKIGIILSTMG 306
            T  TT + ++++++         L+  RLL  T A  F SLI++ +IL + G
Sbjct: 582 TTSSTTGVLVLTLLVESPGLVLRFLILLRLLNTTQANSFRSLIRLSVILGS*G 740


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.326    0.142    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,325,790
Number of Sequences: 63676
Number of extensions: 320132
Number of successful extensions: 2418
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2417
length of query: 414
length of database: 12,639,632
effective HSP length: 100
effective length of query: 314
effective length of database: 6,272,032
effective search space: 1969418048
effective search space used: 1969418048
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)