BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.20
(1583 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 937 0.0
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 932 0.0
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 201 1e-60
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 211 2e-54
TC232995 205 1e-52
TC213445 118 6e-46
AI959950 163 7e-40
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 162 8e-40
BM143109 155 1e-37
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 146 6e-35
CO983516 142 2e-33
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 137 3e-32
AI855982 134 2e-31
AI966222 108 4e-29
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 122 1e-27
CO982036 120 4e-27
BU549979 120 4e-27
BG508993 118 2e-26
BU548243 112 2e-24
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 112 2e-24
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 937 bits (2421), Expect = 0.0
Identities = 475/1019 (46%), Positives = 665/1019 (64%), Gaps = 6/1019 (0%)
Frame = +1
Query: 558 ILQISLIAPLKHQSWYLDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGSGTIG 617
++ SL A K + WYLDSGCSRHMTG + ++ V FG KGKI+G G +
Sbjct: 1645 VVHTSLRASAK-EDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLV 1821
Query: 618 VDNSPCIDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVS*IDGSVLFNSKRRNNT 677
D P ++ VLLV GL NL+SISQL D+G+++ F + C + ++ S+ ++N
Sbjct: 1822 HDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNC 2001
Query: 678 YKIRLSELETQKVKCLLSVNEEQWVWHRRLGHA---SMSKL---DLVRGLPTLKFSSDAL 731
Y E CL S +E +WH+R GH M K+ VRG+P LK +
Sbjct: 2002 YLWTPQETSYSST-CLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRI 2178
Query: 732 CEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGLVKTESIGGKRYGMVIVDDYSCWTW 791
C CQ GK K+ + +TSR LELLH+DL G ++ ES+GGKRY V+VDD+S +TW
Sbjct: 2179 CGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTW 2358
Query: 792 VKFLSRKDESHSVFSTFIAQVQNEKGCRIMRVRSDHGGEFENDKFESLFDSYGIAHDFSC 851
V F+ K E+ VF ++Q EK C I R+RSDHG EFEN +F S GI H+FS
Sbjct: 2359 VNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSA 2538
Query: 852 PRTHQQNGVIERKNRTLQEMARTMLQETDMAKHFWAEAVNTTCYIQNRISIRPILNKTPY 911
T QQNG++ERKNRTLQE AR ML ++ + WAEA+NT CYI NR+++R T Y
Sbjct: 2539 AITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLY 2718
Query: 912 ELWKKIKPNFSYFHPFGCVCYALNNKDRLHKFDSKSSKCLLLGYSDRSKGFRIYNTDAKT 971
E+WK KP+ +FH FG CY L ++++ K D KS + LGYS S+ +R++N+ +T
Sbjct: 2719 EIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRT 2898
Query: 972 IEECIHVRFDDKLDSDQSKLVEKFADMSINVSDKGKAPEEAEPEEDSLEEVGLSDSQPQK 1031
+ E I+V DD + + + E NV+D K+ E AE + + +E ++ +
Sbjct: 2899 VMESINVVVDDLSPARKKDVEEDVRTSGDNVADAAKSGENAENSDSATDESNINQPDKRS 3078
Query: 1032 KSRIVASHPKELILGIKDEPV*TRSAFRPSEETLLSLKGLVSLIEPKSIDEALQDKDWIL 1091
+RI HPKELI+G + V TRS E ++S VS IEPK++ EAL D+ WI
Sbjct: 3079 STRIQKMHPKELIIGDPNRGVTTRSR----EVEIVSNSCFVSKIEPKNVKEALTDEFWIN 3246
Query: 1092 TMEEELNQFSKNDVWNLVKKPQGVHILGTKWVFRNKLNEKGDVVRNKARLVAQGNSQQEG 1151
M+EEL QF +N+VW LV +P+G +++GTKW+F+NK NE+G + RNKARLVAQG +Q EG
Sbjct: 3247 AMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEG 3426
Query: 1152 IDYTETFALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYISEEVYVHQPPGFEDEK 1211
+D+ ETFA VARLE+IRLL+ + ++QMDVKSAFLNGY++EEVYV QP GF D
Sbjct: 3427 VDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPT 3606
Query: 1212 NPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLDNEFVRGKVDTTLFCKTYKDDI*IKQIYV 1271
+PDHV++LKK+LYGLKQAPRAWY RL+ FL + +G +D TLF K +++ I QIYV
Sbjct: 3607 HPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYV 3786
Query: 1272 DDIIFGSANPSLCKEFSEMMQAELEMSTMGELKYFLGIQVDQKPEATYIHQSKYTKELLK 1331
DDI+FG + + + F + MQ+E EMS +GEL YFLG+QV Q ++ ++ QS+Y K ++K
Sbjct: 3787 DDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVK 3966
Query: 1332 KFNMKKSTIAKTPMHPTCILEKEDVSGKVCQKIYRGMIGSLLYLTASRPDILFSVHLCAR 1391
KF M+ ++ +TP L K++ V Q +YR MIGSLLYLTASRPDI ++V +CAR
Sbjct: 3967 KFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCAR 4146
Query: 1392 FQSDPRETHLTAVKRIRRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNC 1451
+Q++P+ +HLT VKRI +Y+ GT++ G+MY S L GYCDAD+AG +RKSTSG C
Sbjct: 4147 YQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGC 4326
Query: 1452 QFLGSNLVSWASKRQSIIALSLAEAEYISAAICSTQMLWTKHQLEDYQILESNIPIYCDN 1511
+LG+NL+SW SK+Q+ ++LS AEAEYI+A +Q++W K L++Y + + + +YCDN
Sbjct: 4327 FYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDN 4506
Query: 1512 TAAISLSKNPILHSRAKHIEVKYHFIRDYV*KGVLLLKFVDTDHQWANIFTKPLADDRF 1570
+AI++SKNP+ HSR KHI++++H+IRD V V+ LK VDT+ Q A+IFTK L ++F
Sbjct: 4507 MSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQF 4683
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 932 bits (2408), Expect = 0.0
Identities = 473/1019 (46%), Positives = 661/1019 (64%), Gaps = 6/1019 (0%)
Frame = +1
Query: 558 ILQISLIAPLKHQSWYLDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGSGTIG 617
++ SL A K + WYLDSGCSRHMTG + ++ V FG KGKI G G +
Sbjct: 1648 VVHTSLRASAK-EDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLV 1824
Query: 618 VDNSPCIDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVS*IDGSVLFNSKRRNNT 677
D P ++ VLLV GL NL+SISQL D+G+++ F + C + ++ S+ ++N
Sbjct: 1825 HDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNC 2004
Query: 678 YKIRLSELETQKVKCLLSVNEEQWVWHRRLGHA---SMSKL---DLVRGLPTLKFSSDAL 731
Y E CL S +E +WH+R GH M K+ VRG+P LK +
Sbjct: 2005 YLWTPQETSYSST-CLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRI 2181
Query: 732 CEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGLVKTESIGGKRYGMVIVDDYSCWTW 791
C CQ GK K+ + +TSR LELLH+DL G ++ ES+GGKRY V+VDD+S +TW
Sbjct: 2182 CGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTW 2361
Query: 792 VKFLSRKDESHSVFSTFIAQVQNEKGCRIMRVRSDHGGEFENDKFESLFDSYGIAHDFSC 851
V F+ K ++ VF ++Q EK C I R+RSDHG EFEN KF S GI H+FS
Sbjct: 2362 VNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSA 2541
Query: 852 PRTHQQNGVIERKNRTLQEMARTMLQETDMAKHFWAEAVNTTCYIQNRISIRPILNKTPY 911
T QQNG++ERKNRTLQE AR ML ++ + WAEA+NT CYI NR+++R T Y
Sbjct: 2542 AITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLY 2721
Query: 912 ELWKKIKPNFSYFHPFGCVCYALNNKDRLHKFDSKSSKCLLLGYSDRSKGFRIYNTDAKT 971
E+WK KP +FH FG CY L ++++ K D KS + LGYS S+ +R++N+ +T
Sbjct: 2722 EIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRT 2901
Query: 972 IEECIHVRFDDKLDSDQSKLVEKFADMSINVSDKGKAPEEAEPEEDSLEEVGLSDSQPQK 1031
+ E I+V DD + + + E NV+D K+ E AE + + +E ++ +
Sbjct: 2902 VMESINVVVDDLTPARKKDVEEDVRTSGDNVADTAKSAENAENSDSATDEPNINQPDKRP 3081
Query: 1032 KSRIVASHPKELILGIKDEPV*TRSAFRPSEETLLSLKGLVSLIEPKSIDEALQDKDWIL 1091
RI HPKELI+G + V TRS E ++S VS IEPK++ EAL D+ WI
Sbjct: 3082 SIRIQKMHPKELIIGDPNRGVTTRSR----EIEIVSNSCFVSKIEPKNVKEALTDEFWIN 3249
Query: 1092 TMEEELNQFSKNDVWNLVKKPQGVHILGTKWVFRNKLNEKGDVVRNKARLVAQGNSQQEG 1151
M+EEL QF +N+VW LV +P+G +++GTKW+F+NK NE+G + RNKARLVAQG +Q EG
Sbjct: 3250 AMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEG 3429
Query: 1152 IDYTETFALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYISEEVYVHQPPGFEDEK 1211
+D+ ETFA VARLE+IRLL+ + ++QMDVKSAFLNGY++EE YV QP GF D
Sbjct: 3430 VDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPT 3609
Query: 1212 NPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLDNEFVRGKVDTTLFCKTYKDDI*IKQIYV 1271
+PDHV++LKK+LYGLKQAPRAWY RL+ FL + +G +D TLF K +++ I QIYV
Sbjct: 3610 HPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYV 3789
Query: 1272 DDIIFGSANPSLCKEFSEMMQAELEMSTMGELKYFLGIQVDQKPEATYIHQSKYTKELLK 1331
DDI+FG + + + F + MQ+E EMS +GEL YFLG+QV Q ++ ++ QSKY K ++K
Sbjct: 3790 DDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVK 3969
Query: 1332 KFNMKKSTIAKTPMHPTCILEKEDVSGKVCQKIYRGMIGSLLYLTASRPDILFSVHLCAR 1391
KF M+ ++ +TP L K++ V Q +YR MIGSLLYLTASRPDI ++V +CAR
Sbjct: 3970 KFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCAR 4149
Query: 1392 FQSDPRETHLTAVKRIRRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNC 1451
+Q++P+ +HL VKRI +Y+ GT++ G+MY S+ L GYCDAD+AG +RKSTSG C
Sbjct: 4150 YQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGC 4329
Query: 1452 QFLGSNLVSWASKRQSIIALSLAEAEYISAAICSTQMLWTKHQLEDYQILESNIPIYCDN 1511
+LG+NL+SW SK+Q+ ++LS AEAEYI+A +Q++W K L++Y + + + +YCDN
Sbjct: 4330 FYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDN 4509
Query: 1512 TAAISLSKNPILHSRAKHIEVKYHFIRDYV*KGVLLLKFVDTDHQWANIFTKPLADDRF 1570
+AI++SKNP+ HSR KHI++++H+IRD V V+ L+ VDT+ Q A+IFTK L ++F
Sbjct: 4510 MSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDANQF 4686
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 201 bits (511), Expect(2) = 1e-60
Identities = 104/190 (54%), Positives = 131/190 (68%)
Frame = +3
Query: 1261 KDDI*IKQIYVDDIIFGSANPSLCKEFSEMMQAELEMSTMGELKYFLGIQVDQKPEATYI 1320
K+ I IYVDDIIFG+ + +CKEF E+M+ E S GELK+ LG+Q+ QK +I
Sbjct: 477 KETFLIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFI 656
Query: 1321 HQSKYTKELLKKFNMKKSTIAKTPMHPTCILEKEDVSGKVCQKIYRGMIGSLLYLTASRP 1380
HQ KYTK LK+F M ++ TPMH + I++K++ K Y GMI SL YLT+SRP
Sbjct: 657 HQEKYTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRP 836
Query: 1381 DILFSVHLCARFQSDPRETHLTAVKRIRRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGD 1440
DI+F V LCARFQS P+ +H+TAVKRI RYL GTTN L +KK SE+ L GYCD +AGD
Sbjct: 837 DIVFVVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGD 1016
Query: 1441 RTERKSTSGN 1450
+ ERKSTS N
Sbjct: 1017 KVERKSTSRN 1046
Score = 52.4 bits (124), Expect(2) = 1e-60
Identities = 26/47 (55%), Positives = 30/47 (63%)
Frame = +2
Query: 1218 KLKKSLYGLKQAPRAWYGRLSSFLLDNEFVRGKVDTTLFCKTYKDDI 1264
K +YGLKQA RAWY RLSSFL+ N F RG D LF K K ++
Sbjct: 347 KTLSCVYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRKAQKGNL 487
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 211 bits (537), Expect = 2e-54
Identities = 99/153 (64%), Positives = 126/153 (81%)
Frame = -3
Query: 1091 LTMEEELNQFSKNDVWNLVKKPQGVHILGTKWVFRNKLNEKGDVVRNKARLVAQGNSQQE 1150
+ M+EELNQF +N+VW LV+KP+ ++GTKWVFRNKL+E G ++RNKARLVA+G +Q+E
Sbjct: 461 IAMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEE 282
Query: 1151 GIDYTETFALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYISEEVYVHQPPGFEDE 1210
GIDY ET+A VARLE IR+L+++ N ++QMDVKSAFLNG I EEVYV QPPGFE
Sbjct: 281 GIDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIP 102
Query: 1211 KNPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLD 1243
P HV+KL+K+LYGLKQAPRAWY R+S+FLL+
Sbjct: 101 DKPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3
>TC232995
Length = 1009
Score = 205 bits (522), Expect = 1e-52
Identities = 103/173 (59%), Positives = 125/173 (71%)
Frame = +2
Query: 1201 VHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLDNEFVRGKVDTTLFCKTY 1260
V QPPGFE P+HV+KL+K+LYGLKQAPRAWY RLS+FLL+ EF RGKVDTTLF K
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 1261 KDDI*IKQIYVDDIIFGSANPSLCKEFSEMMQAELEMSTMGELKYFLGIQVDQKPEATYI 1320
+DI + QIYVDDIIFGS N SLCKEFS MQ+E EMS MGELKYFLG+Q+ Q +I
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361
Query: 1321 HQSKYTKELLKKFNMKKSTIAKTPMHPTCILEKEDVSGKVCQKIYRGMIGSLL 1373
+QSKY KEL+K+F M + TPM C L+K++ + K YR IG ++
Sbjct: 362 NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>TC213445
Length = 705
Score = 118 bits (296), Expect(2) = 6e-46
Identities = 56/98 (57%), Positives = 74/98 (75%)
Frame = +1
Query: 1441 RTERKSTSGNCQFLGSNLVSWASKRQSIIALSLAEAEYISAAICSTQMLWTKHQLEDYQI 1500
+T+R+STS C F+GS LVSW SK+Q+ + LS AEAEYISA Q+ W + QL DY +
Sbjct: 400 KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579
Query: 1501 LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIR 1538
+IPI CDNT+AI+LSKN IL+SR KHIE+++HF+R
Sbjct: 580 KLDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 86.3 bits (212), Expect(2) = 6e-46
Identities = 40/68 (58%), Positives = 50/68 (72%)
Frame = +2
Query: 1368 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRIRRYLKGTTNLGLMYKKTSEY 1427
MI S LYL+ SRP I+FSV +C R+Q++P+E+HL+ +KRI RYL G NLGL Y K S Y
Sbjct: 197 MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376
Query: 1428 KLSGYCDA 1435
L GY DA
Sbjct: 377 NLVGYSDA 400
>AI959950
Length = 466
Score = 163 bits (412), Expect(2) = 7e-40
Identities = 83/129 (64%), Positives = 101/129 (77%)
Frame = -1
Query: 1093 MEEELNQFSKNDVWNLVKKPQGVHILGTKWVFRNKLNEKGDVVRNKARLVAQGNSQQEGI 1152
M+EEL+QF KN+V LVK P+ ++G KW+F NKL+E G VVR KARLVA+G SQQEGI
Sbjct: 388 MQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEGI 209
Query: 1153 DYTETFALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYISEEVYVHQPPGFEDEKN 1212
DY +TFALVARLE I +L+SF+ N+ ++QMDVKSAFLNG I +EVYV QPPGFE+E
Sbjct: 208 DYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENETL 29
Query: 1213 PDHVFKLKK 1221
HVFKL K
Sbjct: 28 HQHVFKLNK 2
Score = 21.2 bits (43), Expect(2) = 7e-40
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -2
Query: 1071 LVSLIEPKSIDEALQD 1086
L+ ++PK IDEA++D
Sbjct: 453 LIFEMKPKHIDEAIKD 406
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 162 bits (411), Expect = 8e-40
Identities = 86/217 (39%), Positives = 136/217 (62%), Gaps = 4/217 (1%)
Frame = +1
Query: 1365 YRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRIRRYLKGTTNLGLMYK-- 1422
+R +IGSL YL SRP+I F+V L +RF PR +H+ A KR+ R +KGT G+++
Sbjct: 22 FRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVLFPFK 201
Query: 1423 -KTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIALSLAEAEYISA 1481
K+ + L GY D+D+ D + KST G V+ +SK+Q +IALS EAEY++A
Sbjct: 202 AKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAEYVAA 381
Query: 1482 AICSTQMLWTKHQLEDYQILESN-IPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY 1540
++ + Q +W + LE+ ++ E + + DN +AI+L+K+P LH R+KHIE+++H+IRD
Sbjct: 382 SLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHYIRDQ 561
Query: 1541 V*KGVLLLKFVDTDHQWANIFTKPLADDRFNFILKNL 1577
V KG + +++ + Q A++ TKP+ RF I L
Sbjct: 562 VSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>BM143109
Length = 415
Score = 155 bits (392), Expect = 1e-37
Identities = 79/134 (58%), Positives = 96/134 (70%)
Frame = +1
Query: 1203 QPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLDNEFVRGKVDTTLFCKTYKD 1262
QPP ++ + P+HVFKLKK LYGLKQA RAWY LS FLLD F +GKVDT LF +
Sbjct: 4 QPPVRKNSEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLN 183
Query: 1263 DI*IKQIYVDDIIFGSANPSLCKEFSEMMQAELEMSTMGELKYFLGIQVDQKPEATYIHQ 1322
DI + QIYVDDIIFGS N SLCK+FS+ MQ E EMS M EL +FLG+Q+ Q +I Q
Sbjct: 184 DILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFISQ 363
Query: 1323 SKYTKELLKKFNMK 1336
SKY K+L+ +F M+
Sbjct: 364 SKYCKDLIHRFGME 405
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 146 bits (369), Expect = 6e-35
Identities = 67/111 (60%), Positives = 92/111 (82%)
Frame = +3
Query: 1076 EPKSIDEALQDKDWILTMEEELNQFSKNDVWNLVKKPQGVHILGTKWVFRNKLNEKGDVV 1135
EPK+I EA+ D +WI+ M+EELNQF +N+VW LV+KP+ ++GTKWVFRNKL+E G ++
Sbjct: 3 EPKNIKEAIVDDNWIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIII 182
Query: 1136 RNKARLVAQGNSQQEGIDYTETFALVARLEAIRLLISFSVNHNIIVHQMDV 1186
RNKARLVA+G +Q+EGIDY ET+A VARLEAIR+L++++ N ++QMDV
Sbjct: 183 RNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMNFKLYQMDV 335
>CO983516
Length = 724
Score = 142 bits (357), Expect = 2e-33
Identities = 70/120 (58%), Positives = 89/120 (73%)
Frame = +2
Query: 1158 FALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVF 1217
F VARLE+IRLL+ + ++QMDVKSAFLNGY++EEVYV QP GF D +PDHV+
Sbjct: 365 FHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVY 544
Query: 1218 KLKKSLYGLKQAPRAWYGRLSSFLLDNEFVRGKVDTTLFCKTYKDDI*IKQIYVDDIIFG 1277
+LKK+LYGLKQAPRAWY RL+ L + +G +D TLF K +++ I QIYVDDI+FG
Sbjct: 545 RLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFG 724
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 137 bits (346), Expect = 3e-32
Identities = 64/151 (42%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Frame = +2
Query: 1428 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIALSLAEAEYISAAICSTQ 1487
+LSGYCDAD+AG +R+STSG C F+G NLVSW SK+Q+++A S AEAEY S A+ + +
Sbjct: 14 QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193
Query: 1488 MLWTKHQLEDYQILES-NIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV*KGVL 1546
++W K L++ + E + +YCDN AA+ ++ NP+ H R KHIE+ HFIR+ + +
Sbjct: 194 LMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEI 373
Query: 1547 LLKFVDTDHQWANIFTKPLADDRFNFILKNL 1577
+ +F+ ++ Q +I TK L + + L
Sbjct: 374 VTEFIGSNDQPVDILTKSLRGPKIQIVCSKL 466
>AI855982
Length = 484
Score = 134 bits (338), Expect = 2e-31
Identities = 72/165 (43%), Positives = 106/165 (63%)
Frame = +2
Query: 1040 PKELILGIKDEPV*TRSAFRPSEETLLSLKGLVSLIEPKSIDEALQDKDWILTMEEELNQ 1099
P + I+G + V TR + + L + VS+IEPK+I EA+ D +WI+ M+EELNQ
Sbjct: 2 PLDNIIGDISKGVTTRHSLKD----LCNNMAFVSMIEPKNIKEAIVDDNWIIAMQEELNQ 169
Query: 1100 FSKNDVWNLVKKPQGVHILGTKWVFRNKLNEKGDVVRNKARLVAQGNSQQEGIDYTETFA 1159
F +N+VW LV+KP ++ TKWVFRNKL+E ++ +KARLVA+G +Q +G+DY T+A
Sbjct: 170 FERNNVWKLVEKPDNYPVI*TKWVFRNKLDEHRIIIIHKARLVAEGYNQVDGLDYEHTYA 349
Query: 1160 LVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYISEEVYVHQP 1204
+ARL I + +S+ N ++ SA L+G + EVYV QP
Sbjct: 350 SIARL*VIIMPLSYVYIMNSTLYHYACVSALLHGLLLHEVYVDQP 484
>AI966222
Length = 430
Score = 108 bits (271), Expect(2) = 4e-29
Identities = 50/87 (57%), Positives = 60/87 (68%)
Frame = +1
Query: 870 EMARTMLQETDMAKHFWAEAVNTTCYIQNRISIRPILNKTPYELWKKIKPNFSYFHPFGC 929
EMART L + KHF AE +N CY+QN+I IRPIL +TPYELWK KPN SYF+PF C
Sbjct: 1 EMARTTLNDNLTPKHF*AEVMNIVCYLQNKIYIRPILKRTPYELWKGRKPNISYFYPFRC 180
Query: 930 VCYALNNKDRLHKFDSKSSKCLLLGYS 956
C+ +N KD L K DSKS + + YS
Sbjct: 181 KCFIINTKDNLGKIDSKSDCGIFIAYS 261
Score = 39.3 bits (90), Expect(2) = 4e-29
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +2
Query: 959 SKGFRIYNTDAKTIEECIHVRF-DDKLDSDQSKLVEKFADMSIN 1001
SK FR+YN+ IEE IH+RF +K + + +L E FAD+ ++
Sbjct: 269 SKAFRVYNSGTLVIEEAIHIRFGKNKPNKELLELDESFADLRLD 400
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 122 bits (306), Expect = 1e-27
Identities = 60/130 (46%), Positives = 89/130 (68%)
Frame = -2
Query: 1109 VKKPQGVHILGTKWVFRNKLNEKGDVVRNKARLVAQGNSQQEGIDYTETFALVARLEAIR 1168
V P G +G +WV+ K+ G+V R KARLVA+G +Q GIDY +TF+ VA+L +R
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 1169 LLISFSVNHNIIVHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQ 1228
L ++ + + +HQ+D+K+AFL+G + E++Y+ QPPGF + V KL +SLYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 1229 APRAWYGRLS 1238
+PRAW+G+ S
Sbjct: 46 SPRAWFGKFS 17
>CO982036
Length = 674
Score = 120 bits (302), Expect = 4e-27
Identities = 70/203 (34%), Positives = 113/203 (55%), Gaps = 3/203 (1%)
Frame = -2
Query: 1269 IYVDDIIFGSANPSLCKEFSEMMQAELEMSTMGELKYFLGIQVDQKPEATYIHQSKYTKE 1328
+YVD II GS+ +L + + + + + +G+L YF+ I+V P+ + ++ +
Sbjct: 640 VYVDIIITGSSC-TLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDLLFSLRTSIFEI 464
Query: 1329 LLKKFNMKKSTIAKTPMHPTCILEKEDVSGKVCQKIYRGMIGSLLYLTASRPDILFSVHL 1388
+K + I+ +PM TC L K D YR ++G+L Y T RP+I F+V+
Sbjct: 463 FCRKPR*QAQPIS-SPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISFAVNK 287
Query: 1389 CARFQSDPRETHLTAVKRIRRYLKGTTNLGLMYK---KTSEYKLSGYCDADYAGDRTERK 1445
+F S+P ++H T VKRI RYLKG+ + GL K + + G+CDAD+A +++
Sbjct: 286 VCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASAVDDKR 107
Query: 1446 STSGNCQFLGSNLVSWASKRQSI 1468
STSG FLG NL+SW +Q +
Sbjct: 106 STSGAAVFLGPNLISWWXXKQQV 38
>BU549979
Length = 615
Score = 120 bits (302), Expect = 4e-27
Identities = 63/183 (34%), Positives = 109/183 (59%), Gaps = 3/183 (1%)
Frame = -1
Query: 1391 RFQSDPRETHLTAVKRIRRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGN 1450
R+QS+P H K++ RYL+GT + LMYK+T+ ++ GY D+D+AG R+STSG
Sbjct: 606 RYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTSGY 427
Query: 1451 CQFLGSNLVSWASKRQSIIALSLAEAEYISAAICSTQMLWTKHQLEDYQILES---NIPI 1507
L +VSW S +Q++IA S E E++ ++ +W K + ++++S + +
Sbjct: 426 IFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPLKL 247
Query: 1508 YCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV*KGVLLLKFVDTDHQWANIFTKPLAD 1567
YCDN AA+ ++KN +R+KHI++KY IR+ V + ++++ V+T+ + TK +
Sbjct: 246 YCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTKGMTP 67
Query: 1568 DRF 1570
F
Sbjct: 66 KNF 58
>BG508993
Length = 374
Score = 118 bits (296), Expect = 2e-26
Identities = 53/123 (43%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Frame = +1
Query: 1412 KGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIAL 1471
KGT + GL Y ++ YKL G+CD+D+AGD +RKST+G F+G + +W+SK+Q I+ L
Sbjct: 4 KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183
Query: 1472 SLAEAEYISAAICSTQMLWTKHQLEDYQILE-SNIPIYCDNTAAISLSKNPILHSRAKHI 1530
EAEY++A C+ +W + LE+ Q+L+ + IY DN +A L+KN + H R+KHI
Sbjct: 184 FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHI 363
Query: 1531 EVK 1533
+ +
Sbjct: 364 DTR 372
>BU548243
Length = 599
Score = 112 bits (279), Expect = 2e-24
Identities = 57/147 (38%), Positives = 85/147 (57%)
Frame = -1
Query: 1433 CDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIALSLAEAEYISAAICSTQMLWTK 1492
CDA +A D + +ST G+ FLG NL+SW S++Q + A S EAEY S A S ++ W +
Sbjct: 590 CDAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQ 411
Query: 1493 HQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV*KGVLLLKFVD 1552
L + QI + I CDN +A++++ N + HSR KH+E+ F+ + V L + +
Sbjct: 410 ALLMELQIPFTPPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFHIP 231
Query: 1553 TDHQWANIFTKPLADDRFNFILKNLNM 1579
QWA I TKPL+ RF F+ L +
Sbjct: 230 ALDQWAGILTKPLSSARFTFLKSKLTV 150
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 112 bits (279), Expect = 2e-24
Identities = 54/131 (41%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Frame = +3
Query: 1441 RTERKSTSGNCQFLGSNLVSWASKRQSIIALSLAEAEYISAAICSTQMLWTKHQLEDYQI 1500
R +RKST+G F+G +W SK+Q I+ LS EAEY++A C +W ++ L++ ++
Sbjct: 6 RDDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKM 185
Query: 1501 -LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV*KGVLLLKFVDTDHQWAN 1559
E + I DN +A++L+KNP+ H ++KHI+ +YHFIR+ + K + LK+V + Q A+
Sbjct: 186 PQEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAAD 365
Query: 1560 IFTKPLADDRF 1570
IFTKPL + F
Sbjct: 366 IFTKPLKLETF 398
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.351 0.155 0.541
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,630,792
Number of Sequences: 63676
Number of extensions: 975100
Number of successful extensions: 8852
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 6430
Number of HSP's successfully gapped in prelim test: 289
Number of HSP's that attempted gapping in prelim test: 2140
Number of HSP's gapped (non-prelim): 7047
length of query: 1583
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1473
effective length of database: 5,635,272
effective search space: 8300755656
effective search space used: 8300755656
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0134.20