TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0134.17
         (431 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI425328                                                               30  1.6
TC234346 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {A...    29  3.6
CO983525                                                               29  3.6
TC231617 similar to UP|LAM2_CHICK (P14732) Lamin B2, partial (3%)      28  6.1
TC205874 similar to UP|Q945S0 (Q945S0) U2 auxiliary factor small...    28  8.0
TC205873 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor...    28  8.0

>BI425328 
          Length = 421

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 12/44 (27%), Positives = 26/44 (58%)
 Frame = -1

Query: 283 EAPFGFHHPDIVISSADF*RIKTHKDDPVVVMIRINSFNVRRVL 326
           E+ F  HH  + +S   +*+I+ +   P+++++ I  F++R  L
Sbjct: 304 ESSFHIHHNFLNLSHTHW*QIQMNPTKPIIILVMIQLFSIREEL 173


>TC234346 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
           thaliana;} , partial (32%)
          Length = 703

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 81  KSGERTAKEPLYPRKESFERRRPWHQTDSRRQEESGKSLNAHL-TELLRKVKATHVVEAG 139
           +SGER AK P    +    RRR  H   + + +  G++LN     +++ +VK   +  A 
Sbjct: 363 RSGERKAKAPAIIHRNEIIRRRQRH-VSAPKMQNHGRNLNLRQPRKIIARVKKRELRRAL 187

Query: 140 EKETDPPRVV 149
           +  +  P+ V
Sbjct: 186 QMRSPDPKSV 157


>CO983525 
          Length = 701

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 22/89 (24%), Positives = 42/89 (46%), Gaps = 3/89 (3%)
 Frame = -2

Query: 288 FHHPDIVISSADF*RIKTHKDDP---VVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQL 344
           +++ DI+  S D  R+ T  DDP    V+M +++ +N++ +++ +G+     Y       
Sbjct: 550 WNYADIIKVSVDEIRLLTEGDDPYDDTVIMKKLHHYNLKLLIVTEGARGCRYY------- 392

Query: 345 GLTDKDLMPYTGTLVGFSGEQVWVRGYLD 373
               KD   + G + GF  E +   G  D
Sbjct: 391 ---TKD---FKGWVAGFEVEAIDTTGAAD 323


>TC231617 similar to UP|LAM2_CHICK (P14732) Lamin B2, partial (3%)
          Length = 722

 Score = 28.5 bits (62), Expect = 6.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 99  ERRRPWHQTDSRRQEESGKSLNAHLTELLRKVKAT 133
           +   PWHQ +  RQE +   L A L++L +    T
Sbjct: 672 QHHEPWHQHEPHRQEYTTARLQAFLSQLFQGAAPT 568


>TC205874 similar to UP|Q945S0 (Q945S0) U2 auxiliary factor small subunit,
           partial (8%)
          Length = 667

 Score = 28.1 bits (61), Expect = 8.0
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 53  RGLIQRAPVGQGKSKAIRETIQRRDKKIKSGERTAKEPLYPRKESFERRRPW-HQTDSRR 111
           RG   R+PVG+ +S  IRE    R  KI+   R  ++     K + +    +  Q+ ++ 
Sbjct: 40  RGKRSRSPVGRDRSPPIRENSAERRAKIEQWNREKEQGETSNKNNTKSNDDYQEQSVAQN 219

Query: 112 QEESG 116
             ESG
Sbjct: 220 GSESG 234


>TC205873 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor, small
           subunit, partial (78%)
          Length = 1300

 Score = 28.1 bits (61), Expect = 8.0
 Identities = 14/37 (37%), Positives = 21/37 (55%)
 Frame = +2

Query: 53  RGLIQRAPVGQGKSKAIRETIQRRDKKIKSGERTAKE 89
           RG   R+PVG+ +S  IRE+   R  KI+   R  ++
Sbjct: 800 RGKRSRSPVGRDRSPPIRESSAERRAKIEQWNREKEQ 910


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.327    0.143    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,311,808
Number of Sequences: 63676
Number of extensions: 195017
Number of successful extensions: 1456
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of query: 431
length of database: 12,639,632
effective HSP length: 100
effective length of query: 331
effective length of database: 6,272,032
effective search space: 2076042592
effective search space used: 2076042592
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)