TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0134.14
         (277 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BQ273711                                                               77  7e-15
CF922015                                                               55  3e-08
TC205091 weakly similar to UP|Q6TXI7 (Q6TXI7) LRRGT00012, partia...    29  2.0

>BQ273711 
          Length = 409

 Score = 77.4 bits (189), Expect = 7e-15
 Identities = 41/96 (42%), Positives = 56/96 (57%)
 Frame = -2

Query: 45  QREVALDQNRGLNDFRRQDPPKFTGGTDPDNADL*IQEIEKIFEVLQTAEGAKVSLATYL 104
           +R+V   + RGL  FR+  PPKF+G  DP+ A L + E EKIFE +   E  KV  AT++
Sbjct: 288 ERDVEPAEYRGLMAFRKNHPPKFSGDYDPEGARLWLAETEKIFEAMGCLEEHKVLYATFM 109

Query: 105 LLGDAEYWWKGTRGIMRANHEEVN*NSFRTAFLEKY 140
           L G+AE WWK  +    A    +  N+F+  FLE Y
Sbjct: 108 LQGEAENWWKFVKPSFVAPGGVIPWNAFKDKFLENY 1


>CF922015 
          Length = 172

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 25/55 (45%), Positives = 38/55 (68%)
 Frame = -3

Query: 55  GLNDFRRQDPPKFTGGTDPDNADL*IQEIEKIFEVLQTAEGAKVSLATYLLLGDA 109
           GL+ F+R +PP F GG DP+ A+  ++EIEKIF V++  +  KV  AT++L  +A
Sbjct: 167 GLDRFQRNNPPTFKGGYDPEGAEAWLREIEKIFRVMECQDHQKVLFATHMLADEA 3


>TC205091 weakly similar to UP|Q6TXI7 (Q6TXI7) LRRGT00012, partial (5%)
          Length = 1360

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 13/32 (40%), Positives = 18/32 (55%)
 Frame = +1

Query: 82   EIEKIFEVLQTAEGAKVSLATYLLLGDAEYWW 113
            ++E++F     +E  KV LAT    G A YWW
Sbjct: 1192 KVEQLFACHHISEERKVPLATLSFQGYALYWW 1287


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.324    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,923,192
Number of Sequences: 63676
Number of extensions: 95485
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of query: 277
length of database: 12,639,632
effective HSP length: 96
effective length of query: 181
effective length of database: 6,526,736
effective search space: 1181339216
effective search space used: 1181339216
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)