BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.11
(238 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC219213 35 0.030
TC219631 weakly similar to GB|AAD55277.1|5882724|F25A4 F25A4.4 {... 34 0.051
CA937312 homologue to GP|14388177|gb telomerase reverse transcri... 32 0.26
TC226604 similar to UP|Q93YR3 (Q93YR3) HSP associated protein li... 32 0.33
TC227925 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein ... 31 0.57
TC219825 weakly similar to UP|MID2_YEAST (P36027) Mating process... 31 0.57
TC223505 similar to UP|Q9FJR9 (Q9FJR9) Similarity to maturase-re... 31 0.57
CA785470 similar to GP|28411852|dbj| P0700D12.25 {Oryza sativa (... 30 0.74
TC204865 weakly similar to UP|O23345 (O23345) Hydroxyproline-ric... 30 0.97
TC230446 weakly similar to UP|Q6V9S3 (Q6V9S3) RPE1 protein, part... 30 1.3
TC215396 weakly similar to UP|Q8H9F4 (Q8H9F4) 41 kD chloroplast ... 29 1.7
TC223643 similar to UP|Q9FJY3 (Q9FJY3) Photoreceptor-interacting... 29 2.2
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 29 2.2
TC220421 weakly similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell... 28 2.8
BI784530 similar to GP|8778238|gb|A F10B6.11 {Arabidopsis thalia... 28 2.8
BU090186 28 3.7
TC224715 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%) 28 3.7
TC228205 similar to UP|Q38820 (Q38820) Inner mitochondrial membr... 28 3.7
TC230247 weakly similar to GB|AAP88326.1|32815835|BT009692 At1g6... 28 3.7
BU550211 28 4.8
>TC219213
Length = 883
Score = 35.0 bits (79), Expect = 0.030
Identities = 34/112 (30%), Positives = 56/112 (49%), Gaps = 1/112 (0%)
Frame = +2
Query: 6 GGAESSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASL-ARPASSQDEGANSQGSPV 64
G SS +S K SE++L P+P + + P SL AR A ++ +NS+ +P
Sbjct: 71 GNNSSSSRLARLSLDEKVSESNLTKGPTPPVHQKKPQRRSLPARLAPERNSVSNSRTAPT 250
Query: 65 FCSPSAETNHAISGDQAGPSASQQPSLIAFMLSNASLEVKAKTESVNAGKAT 116
++ AI +++ S++ + LSNA+ E KAKT + N K+T
Sbjct: 251 -------SSKAIKDEKSSLSSAAKKHT---NLSNATGEEKAKTIAANEEKST 376
>TC219631 weakly similar to GB|AAD55277.1|5882724|F25A4 F25A4.4 {Arabidopsis
thaliana;} , partial (87%)
Length = 1216
Score = 34.3 bits (77), Expect = 0.051
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +3
Query: 24 SENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCSPSAETNHAISGDQAGP 83
S + +TPS T +GP AS+A PAS A S+ ++ ++ + S +AG
Sbjct: 687 SSSPRSSTPSSTATASGPPSASVA-PASPSSSAARSRSWHAISPATSPSSSSTSSSKAGA 863
Query: 84 SASQQPS 90
+AS + S
Sbjct: 864 TASARGS 884
>CA937312 homologue to GP|14388177|gb telomerase reverse transcriptase
{Cryptosporidium parvum}, partial (0%)
Length = 428
Score = 32.0 bits (71), Expect = 0.26
Identities = 33/108 (30%), Positives = 47/108 (42%), Gaps = 4/108 (3%)
Frame = +1
Query: 58 NSQGSPVFCSPSAETNHAISGDQAGPSASQQPSLIAFMLSNASLEVKAKTESVNA-GKAT 116
N SP FCS + S + P PS F LS A K S++ G
Sbjct: 127 NPSLSPPFCSKATTPPSCSSSSSSFP-----PSFPRFHLSGA------KPISLSCRGTRL 273
Query: 117 CILQGQENAFLQSE--LGATNEALADVRSQLEAENQ-ALADMESKTKT 161
C L+G + + + LGA N +A+V S E EN+ AL E++ +
Sbjct: 274 CFLKGSKTLWGRKSFVLGAGNMTMAEVDSHEEGENEGALVGSENENNS 417
>TC226604 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like, partial
(82%)
Length = 1427
Score = 31.6 bits (70), Expect = 0.33
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -3
Query: 50 ASSQDEGANSQGSPVFCSPSAETNHAISGDQAGPSASQQPSLIAFMLSNAS 100
AS +++GSP+FC S+ SG Q PS+S S+I S++S
Sbjct: 411 ASRFSSVTSTEGSPIFCGGSS------SGSQVSPSSSTSDSIITSSSSSSS 277
>TC227925 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein precursor,
partial (88%)
Length = 1035
Score = 30.8 bits (68), Expect = 0.57
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +2
Query: 7 GAESSPCPEGVS--AGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPV 64
G SSP P S A PS S T PSP+ T GPA + PA + A +P
Sbjct: 137 GPASSPTPATPSSPAAASPSAPS-PTNPSPSPTPTGPAASG---PAPAAPTPAPPSPAPA 304
Query: 65 FCSPSAETNHAISGDQAGPSASQQPSLIA 93
+ +A + A PS S + + A
Sbjct: 305 ATAAAASSATAPGAPHPPPSPSSRSTTAA 391
>TC219825 weakly similar to UP|MID2_YEAST (P36027) Mating process protein
MID2 (Serine-rich protein SMS1) (Protein kinase A
interference protein), partial (19%)
Length = 862
Score = 30.8 bits (68), Expect = 0.57
Identities = 29/100 (29%), Positives = 44/100 (44%)
Frame = +2
Query: 10 SSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCSPS 69
SSP P S PS S PSP+ + P+ PASS + S GSP S +
Sbjct: 74 SSPPPPPSS----PSPPSTPPRPSPSPPPSPPS------PASSSASSSPSYGSPSS*SST 223
Query: 70 AETNHAISGDQAGPSASQQPSLIAFMLSNASLEVKAKTES 109
++ + + PS PS + + S++SL + T +
Sbjct: 224 TPSSSSPWSS*SSPSTPTTPSSSSSLSSSSSLSF*SPTST 343
>TC223505 similar to UP|Q9FJR9 (Q9FJR9) Similarity to maturase-related
protein, partial (10%)
Length = 809
Score = 30.8 bits (68), Expect = 0.57
Identities = 20/75 (26%), Positives = 33/75 (43%)
Frame = +2
Query: 11 SPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCSPSA 70
+P P S + PS T SP+ T P+ A+++ + + +P F SPS
Sbjct: 224 APTPPAPSLPVTPSTPPSSTPSSPSAT---PSSATVSNGTTKPTLSSAPPTTPAFPSPSP 394
Query: 71 ETNHAISGDQAGPSA 85
N A + A P++
Sbjct: 395 NANSAPLSNPASPAS 439
>CA785470 similar to GP|28411852|dbj| P0700D12.25 {Oryza sativa (japonica
cultivar-group)}, partial (28%)
Length = 435
Score = 30.4 bits (67), Expect = 0.74
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +1
Query: 2 PKHVGGAESSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQG 61
P V ++S PCP P + ++ TTPS A A +R S G+
Sbjct: 232 PSRVASSKSPPCPSQTQQRRNPRKTTISTTPSS--LRAATASRPRSRSRSG*SRGSLPSR 405
Query: 62 SP 63
SP
Sbjct: 406 SP 411
>TC204865 weakly similar to UP|O23345 (O23345) Hydroxyproline-rich
glycoprotein homolog, partial (23%)
Length = 432
Score = 30.0 bits (66), Expect = 0.97
Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Frame = +3
Query: 2 PKHVGGAESSPC---PEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGAN 58
P SSP P ++ P +S + TPS LT P S+ PASS
Sbjct: 141 PAAPSSGRSSPTTSPPSSKTSITNPKPSSARFTPSTTLTTPPPTARSMTPPASS------ 302
Query: 59 SQGSPVFCSPSAETNHAISGDQA 81
S SP S SA T A S A
Sbjct: 303 SSSSP---SASAWTRSASSPSSA 362
>TC230446 weakly similar to UP|Q6V9S3 (Q6V9S3) RPE1 protein, partial (12%)
Length = 803
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/72 (27%), Positives = 28/72 (38%)
Frame = +2
Query: 15 EGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCSPSAETNH 74
E SA P +S TTP P+ T S PAS+ A+ + S ++ T
Sbjct: 5 ESASAPAPPPASSSSTTPPPSSTAGSSTPPSSRSPASTSTSPASRGTTKTASSSTSATPS 184
Query: 75 AISGDQAGPSAS 86
A P +S
Sbjct: 185TPPSPTASPGSS 220
>TC215396 weakly similar to UP|Q8H9F4 (Q8H9F4) 41 kD chloroplast nucleoid DNA
binding protein (CND41), partial (69%)
Length = 1808
Score = 29.3 bits (64), Expect = 1.7
Identities = 24/79 (30%), Positives = 31/79 (38%)
Frame = +1
Query: 12 PCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCSPSAE 71
P P S P + T PSP A P+ AS + PAS NSQ P P+ +
Sbjct: 928 PAPPAASPSAPPPLPTSSTPPSPPSPAAPPSTASTS-PASPW-AAPNSQSPPPPSPPAVQ 1101
Query: 72 TNHAISGDQAGPSASQQPS 90
++ A P PS
Sbjct: 1102 SSTPAP*SPASPPPPTPPS 1158
>TC223643 similar to UP|Q9FJY3 (Q9FJY3) Photoreceptor-interacting
protein-like, partial (27%)
Length = 737
Score = 28.9 bits (63), Expect = 2.2
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = -3
Query: 1 MPKHVGGAESSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARP 49
+P H + PCP PS + P P L P AS+A P
Sbjct: 453 VPAHAPASSCYPCPSEAPDSPSPSPAT*YYHPPPPLPPPSPPNASMAPP 307
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 28.9 bits (63), Expect = 2.2
Identities = 24/87 (27%), Positives = 42/87 (47%)
Frame = -3
Query: 8 AESSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCS 67
+ESS S+G P S ++ S + + + P+GAS + +SS ++S S S
Sbjct: 513 SESSSESLSSSSGSPPRWTSPSSSSSSSSSSSPPSGASSS--SSSLSSPSSSSSSSSSSS 340
Query: 68 PSAETNHAISGDQAGPSASQQPSLIAF 94
S+ ++ S D S+S +L +F
Sbjct: 339 SSSASSTTSSTDSYSSSSSSTKTLTSF 259
>TC220421 weakly similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell wall
protein gp1 precursor (Hydroxyproline-rich glycoprotein
1), partial (13%)
Length = 1409
Score = 28.5 bits (62), Expect = 2.8
Identities = 21/81 (25%), Positives = 32/81 (38%), Gaps = 11/81 (13%)
Frame = +3
Query: 21 LKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCSPS----------- 69
L PS + TP+P+ P A+ P+++ A+ P SPS
Sbjct: 198 LNPSTSPPHRTPAPSPPSTMPPSATPPSPSATSSPSASPTAPPTSPSPSPPSSPSPPSAP 377
Query: 70 AETNHAISGDQAGPSASQQPS 90
+ ++ A S A P S PS
Sbjct: 378 SPSSTAPSPPSASPPTSPSPS 440
>BI784530 similar to GP|8778238|gb|A F10B6.11 {Arabidopsis thaliana}, partial
(2%)
Length = 422
Score = 28.5 bits (62), Expect = 2.8
Identities = 23/90 (25%), Positives = 40/90 (43%)
Frame = +2
Query: 11 SPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCSPSA 70
S C G +E Q+ S +A G+S ASS + Q + + C+ ++
Sbjct: 68 SDCSTGSVPLGTTTEQISQSRASSIRPQALSHGSSNCSTASSIHTCTSKQYAAIVCASTS 247
Query: 71 ETNHAISGDQAGPSASQQPSLIAFMLSNAS 100
T+H IS + P+ + L +F S++S
Sbjct: 248 CTSHVISYTRTNPTWFHRMDLSSFEASSSS 337
>BU090186
Length = 389
Score = 28.1 bits (61), Expect = 3.7
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -2
Query: 10 SSPCPEGVSAGLKPSENSL-QTTPSPNLTEAGPAGASLARPASS 52
S+ C G + S + TTPSP+ A PAG S P S
Sbjct: 292 SASCTRGATPTATSSATGVGPTTPSPSAPAAAPAGPSSTAPRGS 161
>TC224715 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%)
Length = 1270
Score = 28.1 bits (61), Expect = 3.7
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 10 SSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCSPS 69
SSP P + + S T+P+ T P+ S A A+S A+S SP +PS
Sbjct: 674 SSPPPSPMHSPSSSPSPSAPTSPAATSTPPSPSAPSSA--ATSPSSAASSTSSPSSSAPS 847
Query: 70 A 70
+
Sbjct: 848 S 850
>TC228205 similar to UP|Q38820 (Q38820) Inner mitochondrial membrane protein
(Mitochondrial inner membrane translocase TM23-2) (Inner
mitochondrial membrane protein; 26940-26374), partial
(73%)
Length = 528
Score = 28.1 bits (61), Expect = 3.7
Identities = 28/119 (23%), Positives = 48/119 (39%), Gaps = 8/119 (6%)
Frame = +1
Query: 10 SSPCPEGVSAGLKPSENS---LQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFC 66
SS P S+ +P+ ++ +T+PS PA + PASS +S +P
Sbjct: 163 SSQPPRSTSSSRRPAASADPGARTSPSTPAAATSPALSVAPPPASSAALNPSSPATPPSS 342
Query: 67 SPSAETNHAISGDQAGPSASQQPSLIAFMLSNASLEVKAKTESVNAGK-----ATCILQ 120
+ +A + + G +AS + S + + T S A + A CI+Q
Sbjct: 343 ASTASSTPPATPAAPGATASASSASFTPASRAGSKQRRTPTTSGTASRRDSAPARCIVQ 519
>TC230247 weakly similar to GB|AAP88326.1|32815835|BT009692 At1g61870
{Arabidopsis thaliana;} , partial (56%)
Length = 1291
Score = 28.1 bits (61), Expect = 3.7
Identities = 24/105 (22%), Positives = 46/105 (42%), Gaps = 5/105 (4%)
Frame = +1
Query: 12 PCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCSPSAE 71
P P +++ PS ++P P + A +++++PA + A SP S +A
Sbjct: 187 PSPLTLTSTAVPSPLPSPSSPPPTTSPASAPSSTISKPAPT---SATKNSSPTPSSSTAR 357
Query: 72 -----TNHAISGDQAGPSASQQPSLIAFMLSNASLEVKAKTESVN 111
T A S + P A +P + + +L ++ K+ ES +
Sbjct: 358 PICSITPSAPSPKTSPPLAPSKP*IPSSLLPSSPRTTKSSLESTS 492
>BU550211
Length = 625
Score = 27.7 bits (60), Expect = 4.8
Identities = 24/83 (28%), Positives = 37/83 (43%)
Frame = +1
Query: 84 SASQQPSLIAFMLSNASLEVKAKTESVNAGKATCILQGQENAFLQSELGATNEALADVRS 143
SA PS++AF N++L+VK ++ + G TC+ AT + L R+
Sbjct: 301 SAPXXPSIVAFANGNSALDVKLLRKTTH-GMPTCVPP------------ATPDWLPATRT 441
Query: 144 QLEAENQALADMESKTKTSQARL 166
QL+ A + T ARL
Sbjct: 442 QLQTGIPAYSAPARSAATILARL 510
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.307 0.124 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,005,394
Number of Sequences: 63676
Number of extensions: 87784
Number of successful extensions: 551
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of query: 238
length of database: 12,639,632
effective HSP length: 94
effective length of query: 144
effective length of database: 6,654,088
effective search space: 958188672
effective search space used: 958188672
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0134.11