TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0134.10
         (1564 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete             265  1e-91
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co...   265  3e-90
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti...   210  3e-54
TC213445                                                               84  1e-34
TC232995                                                              134  2e-32
CO982036                                                              115  1e-25
NP004897 gag-protease polyprotein                                     110  6e-24
TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (F...   106  9e-23
BM143109                                                              105  1e-22
BI321712                                                              105  2e-22
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro...   103  6e-22
AW185460                                                              102  2e-21
CF920770                                                               98  2e-20
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag...    94  4e-19
BG508993                                                               92  2e-18
BU549979                                                               91  5e-18
AI855899 similar to GP|2244960|emb| retrotransposon like protein...    89  1e-17
BU550037                                                               88  3e-17
BM086359                                                               84  6e-16
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ...    80  7e-15

>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
          Length = 4731

 Score =  265 bits (676), Expect(2) = 1e-91
 Identities = 125/260 (48%), Positives = 183/260 (70%)
 Frame = +1

Query: 1238 LKNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPE 1297
            +K    +++I QIYVDDI+FG  +  + + F + MQ+EFEMS++GEL YFLG+QV Q  +
Sbjct: 3742 VKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMED 3921

Query: 1298 GTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLT 1357
              ++ QS+Y K ++KKF M  ++  +TP      L K++A   V Q LY  MIG+LLYLT
Sbjct: 3922 SIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLT 4101

Query: 1358 ASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDAD 1417
            ASRPDI ++V +CAR+Q++P+ +HLT VKRIL+Y+ GT++ G+MY       L GYCDAD
Sbjct: 4102 ASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDAD 4281

Query: 1418 YAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLE 1477
            +AG   +RKSTS  C +LG+NL+SW SK Q+ ++LSTAEAEYI      +Q++WMK  L+
Sbjct: 4282 WAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLK 4461

Query: 1478 DYQILESNISIYCDNTAAIH 1497
            +Y + +  +++YCDN +AI+
Sbjct: 4462 EYNVEQDVMTLYCDNMSAIN 4521



 Score =  113 bits (283), Expect = 6e-25
 Identities = 112/433 (25%), Positives = 185/433 (41%), Gaps = 40/433 (9%)
 Frame = +1

Query: 3   SFFLGFDADLWDIIVDGYERP--VDEEGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
           +F    D+  W  ++ G+E P  +D EGK      P  + T ++ +L   + KA   L +
Sbjct: 88  AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFN 267

Query: 57  AISYEEYEKITDREYAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
            +    +  I     AK  +E LK++HEG  KVK S+   L  K+E+  M+  E I +  
Sbjct: 268 GVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFH 447

Query: 117 SRFQLLVAGIRPLNKSYTTKYHVIRVIRSLPESWMPLVTSIELTRDVERMSLEELISILK 176
                +      L +  T +  V +++RSLP+ +   VT+IE  +D+  M ++ELI  L+
Sbjct: 448 MNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQ 627

Query: 177 CHELKHSEM----------------------LDSDE---DELTLISKRLNRIWK------ 205
             EL  S+                       LD+DE   + + L+ K+ N++        
Sbjct: 628 TFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDKRQ 807

Query: 206 --HKQSKYRGSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDKRPKKHFK 263
             H Q+      K     + S  K S  K + C  C+  GH  ++CP        KKH  
Sbjct: 808 KPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCHGCEGYGHIIAECP-----THLKKH-- 966

Query: 264 TKKSLMVTFDESESE-DVDYDGEVQGLMDIVKDKGAESKDVVDSDSESEGDPNSDDENEV 322
            +K L V   ++ESE + D D +V  L  I +     ++D  D+DSE   D         
Sbjct: 967 -RKGLSVCQSDTESEQESDSDRDVNALTGIFE----TAEDSSDTDSEITFD--------- 1104

Query: 323 FASFSTSELKHALSDIMDKYNSLLSKHKKLKKDLSAASKTPYEHEKIISDLKNDNHALVN 382
                  EL  +   +  K   +L +  +LKK ++        H++ IS+LK +   L  
Sbjct: 1105-------ELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEISELKGEVGFL-- 1257

Query: 383 SNSVLKNQIAKLE 395
            NS L+N    ++
Sbjct: 1258-NSKLENMTKSIK 1293



 Score = 92.4 bits (228), Expect(2) = 1e-91
 Identities = 62/153 (40%), Positives = 85/153 (55%)
 Frame = +3

Query: 1070 LDSGYGRRTESIFQE*CLEPSEEASKCPCNWNKMGVQKQVE*ER*CSQKQGKASCSRLQS 1129
            LD  Y RR  +I +E* L  S  A    C+W+++ +Q+Q +* R  +QKQG+  CSRL S
Sbjct: 3237 LDQCYARRIGAIQKE*SLGASS*A*GN*CDWHQVDLQEQNQ*RRCHNQKQGQTGCSRLHS 3416

Query: 1130 AGRNRLH*NICSSSKTRSNQTADLLLSKP*HNSTSDGC*ECIPKWIHIRGSLCSSTPRF* 1189
              R RL *+ C S  T  +Q        P   +  DGC E I +WI    SLC +     
Sbjct: 3417 D*RCRL**DFCPSC*T*VHQIITWCSLYPQIQAVPDGCEERISEWIPE*RSLCGAAKGIC 3596

Query: 1190 R*EEPRPCLQAEEISLWSEASSQSMV*ETQLIP 1222
            R +  R C+QA+E SLW EASS+S+V*+   +P
Sbjct: 3597 RPDSSRSCIQAQEGSLWIEASSKSLV*KANRVP 3695



 Score = 38.1 bits (87), Expect = 0.030
 Identities = 32/96 (33%), Positives = 51/96 (52%)
 Frame = +3

Query: 789  LHSPSAKREGL*DCACQK*PWWRV*E*QV*ESV*FLWNCT*FLLSQNSSTKWCC*EEEQN 848
            + S ++KRE L     Q+*PW R+*+ QV   +    + +* L S  ++T+W  *EE+Q+
Sbjct: 2406 VESKTSKRERLCHQENQE*PWQRI*KQQVH*ILHI*RHHS*VLCSHYTTTEWDS*EEKQD 2585

Query: 849  SSGDG*NHAPRNWHG*ALLGRGSKHSVLHSEQNLCE 884
             +     HA         LG   +HS+LH +Q+  E
Sbjct: 2586 FARGCSGHASCQRTSL*SLG*SHEHSMLHPQQSHTE 2693


>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
          Length = 4734

 Score =  265 bits (677), Expect(2) = 3e-90
 Identities = 125/260 (48%), Positives = 183/260 (70%)
 Frame = +1

Query: 1238 LKNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPE 1297
            +K    +++I QIYVDDI+FG  +  + + F + MQ+EFEMS++GEL YFLG+QV Q  +
Sbjct: 3745 VKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMED 3924

Query: 1298 GTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLT 1357
              ++ QSKY K ++KKF M  ++  +TP      L K++A   V Q LY  MIG+LLYLT
Sbjct: 3925 SIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLT 4104

Query: 1358 ASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDAD 1417
            ASRPDI ++V +CAR+Q++P+ +HL  VKRIL+Y+ GT++ G+MY    +  L GYCDAD
Sbjct: 4105 ASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDAD 4284

Query: 1418 YAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLE 1477
            +AG   +RKSTS  C +LG+NL+SW SK Q+ ++LSTAEAEYI      +Q++WMK  L+
Sbjct: 4285 WAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLK 4464

Query: 1478 DYQILESNISIYCDNTAAIH 1497
            +Y + +  +++YCDN +AI+
Sbjct: 4465 EYNVEQDVMTLYCDNMSAIN 4524



 Score =  115 bits (288), Expect = 2e-25
 Identities = 111/434 (25%), Positives = 185/434 (42%), Gaps = 41/434 (9%)
 Frame = +1

Query: 3   SFFLGFDADLWDIIVDGYERP--VDEEGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
           +F    D+  W  ++ G+E P  +D EGK      P  + T ++ +L   + KA   L +
Sbjct: 88  AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFN 267

Query: 57  AISYEEYEKITDREYAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
            +    +  I     AK  +E LK +HEG  KVK S+   L  K+E+  M+  E I +  
Sbjct: 268 GVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFH 447

Query: 117 SRFQLLVAGIRPLNKSYTTKYHVIRVIRSLPESWMPLVTSIELTRDVERMSLEELISILK 176
                +      L +  T +  V +++RSLP+ +   VT+IE  +D+  M ++ELI  L+
Sbjct: 448 MNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQ 627

Query: 177 CHELKHSEM----------------------LDSDE---DELTLISKRLNRIWKHKQSKY 211
             EL  S+                       LD+DE   + + L+ K+ N++      + 
Sbjct: 628 TFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDRRQ 807

Query: 212 R--------GSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDKRPKKHFK 263
           +           K     + S +K S  K + C  C+  GH K++CP   K        K
Sbjct: 808 KPHVRNIPFDIRKGSEYQKKSDEKPSHSKGIQCHGCEGYGHIKAECPTHLK--------K 963

Query: 264 TKKSLMV-TFDESESE-DVDYDGEVQGLMDIVKDKGAESKDVVDSDSESEGDPNSDDENE 321
            +K L V   D++ESE + D D +V  L      +   ++D  D+DSE   D        
Sbjct: 964 QRKGLSVCRSDDTESEQESDSDRDVNAL----TGRFESAEDSSDTDSEITFD-------- 1107

Query: 322 VFASFSTSELKHALSDIMDKYNSLLSKHKKLKKDLSAASKTPYEHEKIISDLKNDNHALV 381
                   EL  +  ++  K   +L +  +LKK ++        HE+ IS+LK +   L 
Sbjct: 1108--------ELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISELKGEVGFL- 1260

Query: 382 NSNSVLKNQIAKLE 395
             NS L+N    ++
Sbjct: 1261--NSKLENMTKSIK 1296



 Score = 87.4 bits (215), Expect(2) = 3e-90
 Identities = 63/168 (37%), Positives = 88/168 (51%)
 Frame = +3

Query: 1070 LDSGYGRRTESIFQE*CLEPSEEASKCPCNWNKMGVQKQVE*ER*CSQKQGKASCSRLQS 1129
            LD  Y RR  +I +E* L  S       C+W+++ +Q+Q +* R  +QKQG+  CSRL S
Sbjct: 3240 LDQCYARRIGAIQKE*SLGASS*TRGN*CDWHQVDLQEQNQ*RRCYNQKQGQTCCSRLHS 3419

Query: 1130 AGRNRLH*NICSSSKTRSNQTADLLLSKP*HNSTSDGC*ECIPKWIHIRGSLCSSTPRF* 1189
              R RL *N      T  +Q        P   +  DGC E + +WI    SLC +     
Sbjct: 3420 D*RCRL**NFRPCC*T*VHQIVTWCSLHPQIQAVPDGCEERVSEWIPE*RSLCGAAKGIC 3599

Query: 1190 R*EEPRPCLQAEEISLWSEASSQSMV*ETQLIPSGE*VCKG*SRYNSL 1237
            R    R C+QA+E SLW EASS+S+V*+   +P    V +G +  +SL
Sbjct: 3600 RSNSSRSCIQAQEGSLWIEASSKSLV*KANRVPYSARV*EGRN*QDSL 3743



 Score = 38.9 bits (89), Expect = 0.018
 Identities = 32/93 (34%), Positives = 51/93 (54%)
 Frame = +3

Query: 789  LHSPSAKREGL*DCACQK*PWWRV*E*QV*ESV*FLWNCT*FLLSQNSSTKWCC*EEEQN 848
            + S ++KR+ L     Q+*PW RV*+ QV   +    + +* L S  ++TKW  *+E+Q+
Sbjct: 2409 VESKTSKRKRLCHQENQE*PWQRV*KQQVY*ILHI*RHHS*VLCSHYTTTKWHS*KEKQD 2588

Query: 849  SSGDG*NHAPRNWHG*ALLGRGSKHSVLHSEQN 881
             +   * HA         LG   +HS+LH +Q+
Sbjct: 2589 FARSC*GHASCQRTSL*SLG*SHEHSMLHPQQS 2687


>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
          Length = 1213

 Score =  210 bits (535), Expect = 3e-54
 Identities = 109/198 (55%), Positives = 139/198 (70%)
 Frame = +3

Query: 1234 YNSLLKNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVD 1293
            Y+  LK  +   LI+ IYVDDIIFG+ ++ +CKEF E+M+  FE SM GELK+ LG+Q+ 
Sbjct: 459  YSERLK--KETFLIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQII 632

Query: 1294 QTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTL 1353
            Q   G +IHQ KYTK  LK+F M E+    TPMH + I++K++       K Y GMI +L
Sbjct: 633  QKVYGIFIHQEKYTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSL 812

Query: 1354 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGY 1413
             YLT+SRPDI+F V LCARFQS P+ +H+TAVKRILRYL GTTN  L +KK  E+ L GY
Sbjct: 813  SYLTSSRPDIVFVVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGY 992

Query: 1414 CDADYAGDRTERKSTSEN 1431
            CD  +AGD+ ERKSTS N
Sbjct: 993  CDVYFAGDKVERKSTSRN 1046


>TC213445 
          Length = 705

 Score = 83.6 bits (205), Expect(2) = 1e-34
 Identities = 40/76 (52%), Positives = 54/76 (70%)
 Frame = +1

Query: 1422 RTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLEDYQI 1481
            +T+R+STS+ C F+GS LVSW SK Q+++ LSTAEAEYI       Q+ WM+ QL DY +
Sbjct: 400  KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579

Query: 1482 LESNISIYCDNTAAIH 1497
               +I I CDNT+AI+
Sbjct: 580  KLDHIPIRCDNTSAIN 627



 Score = 83.2 bits (204), Expect(2) = 1e-34
 Identities = 38/68 (55%), Positives = 50/68 (72%)
 Frame = +2

Query: 1349 MIGTLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EY 1408
            MI + LYL+ SRP I+FSV +C R+Q++P+E+HL+ +KRI+RYL G  NLGL Y K   Y
Sbjct: 197  MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376

Query: 1409 KLSGYCDA 1416
             L GY DA
Sbjct: 377  NLVGYSDA 400


>TC232995 
          Length = 1009

 Score =  134 bits (338), Expect(2) = 2e-32
 Identities = 67/117 (57%), Positives = 84/117 (71%)
 Frame = +2

Query: 1238 LKNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPE 1297
            +K   NDIL+VQIYVDDIIFGS N SLCKEFS  MQ+EFEMSMMGELKYFLG+Q+ QT  
Sbjct: 170  IKRKHNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ* 349

Query: 1298 GTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLL 1354
            G +I+QSKY KEL+K+F M  +    TPM   C L+K+++   +  K Y   IG ++
Sbjct: 350  GIFINQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520



 Score = 25.0 bits (53), Expect(2) = 2e-32
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +1

Query: 1184 STPRF*R*EEPRPCLQAEEISLWSEASSQSMV*ETQLIPSGE*VCKG*SRYNSLLK 1239
            +TP F*     +PCL   + SLW E S   MV*  +   S + + + *S Y+ + K
Sbjct: 7    TTPWF*NF**TKPCL*ITKGSLWFETSP*GMV*TIK*FSS*KRILQR*SGYHIIHK 174


>CO982036 
          Length = 674

 Score =  115 bits (289), Expect = 1e-25
 Identities = 68/196 (34%), Positives = 110/196 (55%), Gaps = 3/196 (1%)
 Frame = -2

Query: 1250 IYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKE 1309
            +YVD II GS+  +L +  +  + + F + ++G+L YF+ I+V   P+  +  ++   + 
Sbjct: 640  VYVDIIITGSSC-TLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDLLFSLRTSIFEI 464

Query: 1310 LLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTASRPDILFSVHL 1369
              +K       ++ +PM  TC L K D+        Y  ++G L Y T  RP+I F+V+ 
Sbjct: 463  FCRKPR*QAQPIS-SPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISFAVNK 287

Query: 1370 CARFQSDPRETHLTAVKRILRYLKGTTNLGLMYK---KT*EYKLSGYCDADYAGDRTERK 1426
              +F S+P ++H T VKRILRYLKG+ + GL  K    +    + G+CDAD+A    +++
Sbjct: 286  VCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASAVDDKR 107

Query: 1427 STSENCQFLGSNLVSW 1442
            STS    FLG NL+SW
Sbjct: 106  STSGAAVFLGPNLISW 59


>NP004897 gag-protease polyprotein
          Length = 1923

 Score =  110 bits (274), Expect = 6e-24
 Identities = 109/434 (25%), Positives = 183/434 (42%), Gaps = 41/434 (9%)
 Frame = +1

Query: 3   SFFLGFDADLWDIIVDGYERP--VDEEGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
           +F    D+  W  ++  +E P  +D EGK      P  + T ++ +L   + KA   L +
Sbjct: 88  AFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDELALGNSKALNALFN 267

Query: 57  AISYEEYEKITDREYAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
            +    +  I     AK  +E LK +HEG  KVK S+   L  K+E+  M+  E I +  
Sbjct: 268 GVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFH 447

Query: 117 SRFQLLVAGIRPLNKSYTTKYHVIRVIRSLPESWMPLVTSIELTRDVERMSLEELISILK 176
                +      L +  T +  V +++RSLP+ +   VT+IE  +D+  + ++ELI  L+
Sbjct: 448 MNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNLRVDELIGSLQ 627

Query: 177 CHELKHSEM----------------------LDSDE---DELTLISKRLNRIWKHKQSKY 211
             EL  S+                       LD+DE   + + L+ K+ N++      + 
Sbjct: 628 TFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDRRQ 807

Query: 212 R--------GSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDKRPKKHFK 263
           +           K     + S +K S  K   C  C+  GH K++CP   K        K
Sbjct: 808 KPHVRNIPFDIRKGSEYQKRSDEKPSHSKGFQCHGCEGYGHIKAECPTHLK--------K 963

Query: 264 TKKSLMV-TFDESESE-DVDYDGEVQGLMDIVKDKGAESKDVVDSDSESEGDPNSDDENE 321
            +K L V   D++ESE + D D +V  L      +   ++D  D+DSE   D        
Sbjct: 964 QRKGLSVCRSDDTESEQESDSDRDVNAL----TGRFESAEDSSDTDSEITFD-------- 1107

Query: 322 VFASFSTSELKHALSDIMDKYNSLLSKHKKLKKDLSAASKTPYEHEKIISDLKNDNHALV 381
                   EL  +  ++  K   +L +  +LKK ++        HE+ IS+LK +   L 
Sbjct: 1108--------ELATSYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISELKGEVGFL- 1260

Query: 382 NSNSVLKNQIAKLE 395
             NS L+N    ++
Sbjct: 1261--NSKLENMTKSIK 1296


>TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (Fragment),
            partial (16%)
          Length = 562

 Score =  106 bits (264), Expect = 9e-23
 Identities = 54/125 (43%), Positives = 76/125 (60%)
 Frame = +1

Query: 1243 NDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIH 1302
            N  LIV +YVDD++    +  L +EF + M   FEM+ +G + YFLGI++ Q+     I 
Sbjct: 184  NYFLIVSLYVDDLLVTRDDARLVEEFKQEMMQAFEMTNLGLMTYFLGIEIKQSQNKVLIC 363

Query: 1303 QSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTASRPD 1362
            Q KY KE+LKKF M E     TPM+      K D + K+ +  Y  +IG L+YLTA+RPD
Sbjct: 364  QRKYAKEILKKFQMEECKSVSTPMNQKEKFNKVDGADKIDEGYYRSLIGCLMYLTATRPD 543

Query: 1363 ILFSV 1367
            ILF++
Sbjct: 544  ILFAI 558


>BM143109 
          Length = 415

 Score =  105 bits (263), Expect = 1e-22
 Identities = 50/74 (67%), Positives = 60/74 (80%)
 Frame = +1

Query: 1243 NDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIH 1302
            NDIL+VQIYVDDIIFGS N SLCK+FS+ MQ EFEMSMM EL +FLG+Q+ QT  G +I 
Sbjct: 181  NDILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFIS 360

Query: 1303 QSKYTKELLKKFNM 1316
            QSKY K+L+ +F M
Sbjct: 361  QSKYCKDLIHRFGM 402


>BI321712 
          Length = 399

 Score =  105 bits (262), Expect = 2e-22
 Identities = 55/124 (44%), Positives = 77/124 (61%)
 Frame = -3

Query: 1250 IYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKE 1309
            +YVDD+IF   N S+ +EF + M  EFEM+ MG + Y+LGI+V Q  +G +I Q  Y KE
Sbjct: 379  LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200

Query: 1310 LLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTASRPDILFSVHL 1369
            +LKKF M ++    TPM     L K +    V   LY  +IG+L YLT +RPDIL+ V +
Sbjct: 199  VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20

Query: 1370 CARF 1373
             +R+
Sbjct: 19   VSRY 8


>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
            (7%)
          Length = 804

 Score =  103 bits (257), Expect = 6e-22
 Identities = 59/156 (37%), Positives = 93/156 (58%), Gaps = 4/156 (2%)
 Frame = +1

Query: 1346 YHGMIGTLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMY--- 1402
            +  +IG+L YL  SRP+I F+V L +RF   PR +H+ A KR+LR +KGT   G+++   
Sbjct: 22   FRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVLFPFK 201

Query: 1403 KKT*EYKLSGYCDADYAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILT 1462
             K+ +  L GY D+D+  D  + KST           V+ +SK Q  IALST EAEY+  
Sbjct: 202  AKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAEYVAA 381

Query: 1463 AICSTQMLWMKHQLEDYQILESN-ISIYCDNTAAIH 1497
            ++ + Q +WM + LE+ ++ E   +++  DN +AI+
Sbjct: 382  SLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAIN 489


>AW185460 
          Length = 411

 Score =  102 bits (253), Expect = 2e-21
 Identities = 52/106 (49%), Positives = 68/106 (64%)
 Frame = +2

Query: 1358 ASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDAD 1417
            A+RPDI+++  L +RF   P + H  A KRILRYL+GT   G+ Y      +L GY D+D
Sbjct: 89   ATRPDIMYATSLLSRFMQSPSQIHFGAGKRILRYLQGTKAFGIWYTTETNSELLGYTDSD 268

Query: 1418 YAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTA 1463
            +AG   + KSTS     LGS + SWASK Q+T+A STAEAEY+  A
Sbjct: 269  WAGSTDDMKSTSGYAFSLGSGMFSWASKKQATVAQSTAEAEYVAVA 406


>CF920770 
          Length = 581

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 13/186 (6%)
 Frame = -2

Query: 9   DADLWDIIVDGYERPVDEEGKKI-------------PRSEMTADQKKLYSQHHKARAILL 55
           D ++W+ I  G   P   E   I             PR   + + +K    + KA+ I+ 
Sbjct: 574 DLNIWEAIEIGPYIPTTVERVSIDGSSSSESITIEKPRDRWSEEDRKRVQYNLKAKNIIT 395

Query: 56  SAISYEEYEKITDREYAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEM 115
           SA+  +EY ++++ + AK ++++L+++HEG   VK S+  +L  +YE F M  NE+I+ M
Sbjct: 394 SALGMDEYFRVSNCKSAKEMWDTLRLTHEGTTDVKRSRINALTHEYELFRMNTNENIQSM 215

Query: 116 FSRFQLLVAGIRPLNKSYTTKYHVIRVIRSLPESWMPLVTSIELTRDVERMSLEELISIL 175
             RF  +V  +  L K +  +  + +V+R L   W P VT+I  +RD+  MSL  L   L
Sbjct: 214 QKRFTHIVNHLAALGKEFQNEDLINKVLRCLSREWQPKVTAISESRDLSNMSLATLFGKL 35

Query: 176 KCHELK 181
           + HE++
Sbjct: 34  QEHEME 17


>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
            (30%)
          Length = 687

 Score = 94.4 bits (233), Expect = 4e-19
 Identities = 44/90 (48%), Positives = 64/90 (70%), Gaps = 1/90 (1%)
 Frame = +2

Query: 1409 KLSGYCDADYAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQ 1468
            +LSGYCDAD+AG   +R+STS  C F+G NLVSW SK Q+ +A S+AEAEY   A+ + +
Sbjct: 14   QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193

Query: 1469 MLWMKHQLEDYQILES-NISIYCDNTAAIH 1497
            ++W+K  L++ +  E   + +YCDN AA+H
Sbjct: 194  LMWIKQFLQELRFCEELQMKLYCDNQAALH 283


>BG508993 
          Length = 374

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
 Frame = +1

Query: 1393 KGTTNLGLMYKKT*EYKLSGYCDADYAGDRTERKSTSENCQFLGSNLVSWASKWQSTIAL 1452
            KGT + GL Y  +  YKL G+CD+D+AGD  +RKST+    F+G  + +W+SK Q  + L
Sbjct: 4    KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183

Query: 1453 STAEAEYILTAICSTQMLWMKHQLEDYQILE-SNISIYCDNTAA 1495
             T EAEY+    C+   +W++  LE+ Q+L+  +  IY DN +A
Sbjct: 184  FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSA 315


>BU549979 
          Length = 615

 Score = 90.5 bits (223), Expect = 5e-18
 Identities = 47/128 (36%), Positives = 76/128 (58%), Gaps = 3/128 (2%)
 Frame = -1

Query: 1372 RFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAGDRTERKSTSEN 1431
            R+QS+P   H    K+++RYL+GT +  LMYK+T   ++ GY D+D+AG    R+STS  
Sbjct: 606  RYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTSGY 427

Query: 1432 CQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLEDYQILES---NISI 1488
               L   +VSW S  Q+ IA ST E E++     ++  +W+K  +   ++++S    + +
Sbjct: 426  IFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPLKL 247

Query: 1489 YCDNTAAI 1496
            YCDN AA+
Sbjct: 246  YCDNFAAV 223


>AI855899 similar to GP|2244960|emb| retrotransposon like protein {Arabidopsis
            thaliana}, partial (18%)
          Length = 418

 Score = 89.4 bits (220), Expect = 1e-17
 Identities = 51/136 (37%), Positives = 75/136 (54%), Gaps = 3/136 (2%)
 Frame = +1

Query: 1315 NMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTASRPDILFSVHLCARFQ 1374
            NML+     TPM  +  L K  +        Y  ++G L Y+T +RP+I ++V+  + F 
Sbjct: 10   NMLDCNGISTPMVSSYKLSKFGSELLPNAHQYRDIVGALQYVTLTRPNIAYNVNKVSEFM 189

Query: 1375 SDPRETHLTAVKRILRYLKGTTNLGLMYKKT---*EYKLSGYCDADYAGDRTERKSTSEN 1431
            S P +++   VKRILRYL GT   GL+ +      +  L  Y D D+  D  E +STS +
Sbjct: 190  SSPLQSY*LTVKRILRYLSGTVTQGLLLQPAHMDAKISLRAYNDLDWGSDPAEMRSTSGS 369

Query: 1432 CQFLGSNLVSWASKWQ 1447
            C F GSNL++W+SK Q
Sbjct: 370  CIFSGSNLIAWSSKKQ 417


>BU550037 
          Length = 728

 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 42/115 (36%), Positives = 72/115 (62%)
 Frame = -3

Query: 1272 MQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCI 1331
            M++EFEM+ +G++KYFLG+ + Q+ +G +I Q KY  E+L+KF+M       T +     
Sbjct: 363  MESEFEMTDLGQMKYFLGM*IFQSEDGIFISQKKYAWEILRKFHMERCKPIATVLVVNEK 184

Query: 1332 LEKEDASGKVCQKLYHGMIGTLLYLTASRPDILFSVHLCARFQSDPRETHLTAVK 1386
              K++   +    +Y  +IG+LLYL+A+RP+++F+  L +RF   P + HL + K
Sbjct: 183  FSKDEEDNQGDASVYRSLIGSLLYLSATRPNLMFAATLLSRFTKSPSQVHLGSSK 19


>BM086359 
          Length = 427

 Score = 83.6 bits (205), Expect = 6e-16
 Identities = 53/147 (36%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
 Frame = +1

Query: 1288 LGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCIL-----EKEDASGKVC 1342
            LGI V Q+  G  I Q KY  ++L +  ML+   + TPM P   L     E  +  G+ C
Sbjct: 1    LGIDVAQSSYGIVISQWKYALDILTETGMLDCLPSNTPMDPNVKLLSGQGEALEDPGR*C 180

Query: 1343 QKLYHGMIGTLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMY 1402
                  ++G L YLT +R DI F+V + ++F  DP ++   A  RILRY+K     GL+Y
Sbjct: 181  C-----LVGRLNYLTVTRLDITFAVGVLSQFLKDPTDSQWNATIRILRYIKNAPGPGLLY 345

Query: 1403 KKT*EYKLSGYCDADYAGDRTERKSTS 1429
            +     K+  Y DAD+ G  +++ STS
Sbjct: 346  EDKGNGKVVCYFDADWPGSPSDKSSTS 426


>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial (16%)
          Length = 662

 Score = 80.1 bits (196), Expect = 7e-15
 Identities = 46/129 (35%), Positives = 74/129 (56%), Gaps = 2/129 (1%)
 Frame = +3

Query: 1382 LTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAGDRTERKSTSENCQFLGSNLVS 1441
            L A  R+L+YLKG    GL + +    ++ G+ DAD+A      KS +  C FLGS+L+S
Sbjct: 12   LCAATRVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSSLIS 191

Query: 1442 WASKWQSTIALSTAEAEYILTAICST--QMLWMKHQLEDYQILESNISIYCDNTAAIH*V 1499
            W +K Q+T++ S++ +E    A+ ST  ++ W+ + L+D  +      IYCDN +A+ *+
Sbjct: 192  WKAKKQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDLHV----TLIYCDNQSALQ*L 359

Query: 1500 RILSYIQGQ 1508
             I     GQ
Sbjct: 360  PIKVIYHGQ 386


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.347    0.151    0.513 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,563,871
Number of Sequences: 63676
Number of extensions: 1040352
Number of successful extensions: 10123
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 7270
Number of HSP's successfully gapped in prelim test: 304
Number of HSP's that attempted gapping in prelim test: 2462
Number of HSP's gapped (non-prelim): 8041
length of query: 1564
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1454
effective length of database: 5,635,272
effective search space: 8193685488
effective search space used: 8193685488
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 65 (29.6 bits)