TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0131.12
         (78 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC231980 similar to UP|Q8S562 (Q8S562) KAP-2, partial (19%)            36  0.003
TC225460 homologue to UP|ATP2_MAIZE (P19023) ATP synthase beta c...    27  2.5
TC205040 similar to UP|Q9FFF5 (Q9FFF5) Nucleic acid binding prot...    27  2.5
TC210863 similar to UP|O49654 (O49654) Leucine rich repeat recep...    26  3.2
CO985260                                                               25  5.5
BE804706                                                               25  7.2
BG405065                                                               25  7.2
BM523161                                                               25  7.2
TC225330 similar to UP|ATPX_SPIOL (P31853) ATP synthase B' chain...    25  9.4

>TC231980 similar to UP|Q8S562 (Q8S562) KAP-2, partial (19%)
          Length = 590

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 16/43 (37%), Positives = 25/43 (57%)
 Frame = -3

Query: 14  LLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFS 56
           LL+T   +  + VW+ TW  +A+DI + Y+ + T P  I  FS
Sbjct: 582 LLLTATXSKSEQVWDQTWHWMADDIVYNYKKSSTSPSQIFYFS 454


>TC225460 homologue to UP|ATP2_MAIZE (P19023) ATP synthase beta chain,
           mitochondrial precursor  , partial (26%)
          Length = 859

 Score = 26.6 bits (57), Expect = 2.5
 Identities = 9/26 (34%), Positives = 16/26 (60%)
 Frame = -3

Query: 15  LITNIMNNPDHVWNITWKLLANDIQH 40
           L  +++N  +HV  + WK++   IQH
Sbjct: 407 LCNDLLNTANHVKRLLWKVIVFSIQH 330


>TC205040 similar to UP|Q9FFF5 (Q9FFF5) Nucleic acid binding protein-like,
           partial (84%)
          Length = 1092

 Score = 26.6 bits (57), Expect = 2.5
 Identities = 13/45 (28%), Positives = 24/45 (52%)
 Frame = +2

Query: 27  WNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPILLKIDNHLQ 71
           ++++WK L    Q +     T P  +P+F+LS K  +   D+ +Q
Sbjct: 173 FSLSWK*LRLPAQSKRSSRTTPPAELPSFALSLKMWMNSTDSAIQ 307


>TC210863 similar to UP|O49654 (O49654) Leucine rich repeat receptor
           kinase-like protein (At4g22730), partial (23%)
          Length = 843

 Score = 26.2 bits (56), Expect = 3.2
 Identities = 10/28 (35%), Positives = 18/28 (63%)
 Frame = -1

Query: 8   RRLFASLLITNIMNNPDHVWNITWKLLA 35
           R L+ S   T ++N+  H W++ WKL++
Sbjct: 699 R*LYMSR*HTQLLNHIHHGWSLVWKLMS 616


>CO985260 
          Length = 771

 Score = 25.4 bits (54), Expect = 5.5
 Identities = 14/53 (26%), Positives = 26/53 (48%)
 Frame = -1

Query: 7   LRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSS 59
           LRR  A +  T++ +  +HV      + +ND+ H    T ++ G++  F   S
Sbjct: 579 LRRWSAGMGETSVQDQAEHVPEDPVPVTSNDVVHAEAPTNSEVGVVSDFITES 421


>BE804706 
          Length = 190

 Score = 25.0 bits (53), Expect = 7.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 38 IQHEYRGTLTQPGMIPTFSLSSKPILLK 65
          ++H++R +  +P  IP  SLS    LLK
Sbjct: 86 LRHDFRSSARRPRAIPDISLSLDSPLLK 3


>BG405065 
          Length = 394

 Score = 25.0 bits (53), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 2   HSGNELRRLFASLLITNIMN-NPDH 25
           H GN++ R++ SL    +MN NP H
Sbjct: 272 HPGNKIERVYWSLSAHEVMNSNPGH 346


>BM523161 
          Length = 360

 Score = 25.0 bits (53), Expect = 7.2
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -1

Query: 25  HVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPILLKIDNHLQSN 73
           H    T K+  + +    RG  T+   +P   LSS  +  +I+ H+Q++
Sbjct: 174 HQIKFTLKIAVHSLS--IRGNFTESEPLPCVKLSSVAVAFEIEVHMQNS 34


>TC225330 similar to UP|ATPX_SPIOL (P31853) ATP synthase B' chain,
          chloroplast precursor  (Subunit II) , partial (67%)
          Length = 982

 Score = 24.6 bits (52), Expect = 9.4
 Identities = 12/43 (27%), Positives = 19/43 (43%)
 Frame = +1

Query: 35 ANDIQHEYRGTLTQPGMIPTFSLSSKPILLKIDNHLQSNGKSL 77
          A   QH    ++     + + +L S P+ L  D H   N K+L
Sbjct: 1  ATHTQHNTTSSICVAKNLDSLALKSNPLRLSRDTHTHPNHKAL 129


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,181,085
Number of Sequences: 63676
Number of extensions: 56602
Number of successful extensions: 275
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of query: 78
length of database: 12,639,632
effective HSP length: 54
effective length of query: 24
effective length of database: 9,201,128
effective search space: 220827072
effective search space used: 220827072
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)