TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0127a.6
         (105 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW507852                                                               32  0.048
BU764025                                                               26  3.4
BE803569 similar to PIR|S44261|S442 SRG1 protein - Arabidopsis t...    25  7.6
CA784077                                                               25  7.6
BF071166                                                               24  10.0
TC235010 homologue to GB|AAD04176.1|4139230|AF109243 mismatch re...    24  10.0
BM095104 similar to GP|15215794|gb AT5g19180/T24G5_80 {Arabidops...    24  10.0
BG725812                                                               24  10.0
AW596401                                                               24  10.0
TC214787 UP|Q06765 (Q06765) ADR6 protein (Sali5-4a protein), com...    24  10.0
TC207369 UP|Q06765 (Q06765) ADR6 protein (Sali5-4a protein), par...    24  10.0
BG352185 PIR|S33622|S3 ADR6 protein - soybean, partial (54%)           24  10.0

>AW507852 
          Length = 443

 Score = 32.0 bits (71), Expect = 0.048
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +2

Query: 3   YWVQGFRCFPWLAVSFFLKDGLNVAPSTLQLLQNSANLP 41
           Y+VQG      LAV+F+LKD L++ P+   +L   + LP
Sbjct: 320 YFVQGVLGLARLAVNFYLKDDLHLDPAEAAVLSGFSALP 436


>BU764025 
          Length = 450

 Score = 25.8 bits (55), Expect = 3.4
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 1   LGYWVQGFRCFPWLAVSFFLKDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDS 54
           L +W   F+  P L V  FL        S ++ L+ SAN P  G  L   VSD+
Sbjct: 146 LSFWFFLFQGNPILGVYIFLHSD---DVSEVECLKGSANGPRQGVALCHAVSDA 298


>BE803569 similar to PIR|S44261|S442 SRG1 protein - Arabidopsis thaliana,
           partial (26%)
          Length = 337

 Score = 24.6 bits (52), Expect = 7.6
 Identities = 15/47 (31%), Positives = 29/47 (60%)
 Frame = +2

Query: 21  KDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQHRVPYIA 67
           KDG+ V   T++LL N+  + +    +  +V++ +Y+S +HR P I+
Sbjct: 134 KDGVWV---TIKLLPNAFCVNI--GEILEIVTNGIYLSIEHRAPVIS 259


>CA784077 
          Length = 436

 Score = 24.6 bits (52), Expect = 7.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 3   YWVQGFRCFPWL-AVSFFLKDGLNVAPSTLQLLQ 35
           YW+  + CFP+L A +  L    N+  + +QLLQ
Sbjct: 130 YWLPVYACFPFLMAENSRLGIKSNITNTIIQLLQ 231


>BF071166 
          Length = 410

 Score = 24.3 bits (51), Expect = 10.0
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -3

Query: 10  CFPWLAVSFFLKDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYIS 58
           CFP L    F +    ++P +L  LQN      VGT  Y V  D  Y S
Sbjct: 381 CFPAL----FFEQHSPISPRSLSCLQNIGCFKKVGTCFY*V--DGYYSS 253


>TC235010 homologue to GB|AAD04176.1|4139230|AF109243 mismatch repair protein
           {Arabidopsis thaliana;} , partial (7%)
          Length = 760

 Score = 24.3 bits (51), Expect = 10.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 10  CFPWLAVSFFLKDGLNVAPSTLQLLQNSA 38
           C P++ V   LKD + + P TL ++  +A
Sbjct: 645 CLPFILVFKMLKDHMGLRPGTLWIIYLTA 731


>BM095104 similar to GP|15215794|gb AT5g19180/T24G5_80 {Arabidopsis
          thaliana}, partial (24%)
          Length = 429

 Score = 24.3 bits (51), Expect = 10.0
 Identities = 9/17 (52%), Positives = 12/17 (69%)
 Frame = -2

Query: 3  YWVQGFRCFPWLAVSFF 19
          +W+   RCFP LAV+ F
Sbjct: 68 HWIWS*RCFPSLAVAAF 18


>BG725812 
          Length = 416

 Score = 24.3 bits (51), Expect = 10.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 1   LGYWVQGFRCFPWLAVSFFL 20
           +GYW+Q     PW+ V F L
Sbjct: 160 VGYWLQFCNHDPWMEVFFLL 101


>AW596401 
          Length = 429

 Score = 24.3 bits (51), Expect = 10.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 19  FLKDGLNVAPSTLQLLQNSANLPMVG 44
           +LK GL +    L +LQN+  LP++G
Sbjct: 380 WLKLGLLLLVEPLGILQNAKGLPLIG 303


>TC214787 UP|Q06765 (Q06765) ADR6 protein (Sali5-4a protein), complete
          Length = 1150

 Score = 24.3 bits (51), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 8   FRCFPWLAVSFFLKDGLNV 26
           F CF W+ V FF+++G  V
Sbjct: 311 FHCFAWMKV-FFIEEGFRV 258


>TC207369 UP|Q06765 (Q06765) ADR6 protein (Sali5-4a protein), partial (40%)
          Length = 772

 Score = 24.3 bits (51), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 8   FRCFPWLAVSFFLKDGLNV 26
           F CF W+ V FF+++G  V
Sbjct: 699 FHCFAWMKV-FFIEEGFRV 646


>BG352185 PIR|S33622|S3 ADR6 protein - soybean, partial (54%)
          Length = 458

 Score = 24.3 bits (51), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 8   FRCFPWLAVSFFLKDGLNV 26
           F CF W+ V FF+++G  V
Sbjct: 153 FHCFAWMKV-FFIEEGFRV 100


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.355    0.161    0.564 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,673,359
Number of Sequences: 63676
Number of extensions: 51813
Number of successful extensions: 758
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of query: 105
length of database: 12,639,632
effective HSP length: 81
effective length of query: 24
effective length of database: 7,481,876
effective search space: 179565024
effective search space used: 179565024
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 51 (24.3 bits)