BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0126.13
(168 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204056 similar to UP|Q9ZXL1 (Q9ZXL1) Orf15, partial (7%) 279 4e-76
TC204060 similar to UP|Q9G8K7 (Q9G8K7) NADH dehydrogenase subuni... 75 1e-14
TC234312 similar to UP|Q6T624 (Q6T624) Superoxide dismutase, par... 31 0.32
TC227244 similar to UP|Q941A9 (Q941A9) At1g26300/F28B23_4, parti... 31 0.32
TC204109 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%) 30 0.55
TC216870 UP|Q6SS58 (Q6SS58) Bindin (Fragment), partial (7%) 30 0.55
TC204652 similar to UP|H1_PEA (P08283) Histone H1, partial (81%) 30 0.71
BG363363 30 0.71
TC225703 homologue to UP|Q9ZRD8 (Q9ZRD8) GMFP5 (Fragment), parti... 29 1.2
TC231666 weakly similar to UP|A4E1_HUMAN (Q9UPM8) Adapter-relate... 28 1.6
TC220050 similar to UP|CH60_MYCFA (Q49155) 60 kDa chaperonin (Pr... 28 2.1
TC228325 similar to UP|Q9FDV5 (Q9FDV5) Ethylene insensitive (EIN... 28 2.1
TC204103 similar to UP|Q75QC2 (Q75QC2) Glutamate-rich protein, p... 28 2.7
BE059119 similar to PIR|T11846|T118 pathogenesis-related protein... 28 2.7
TC226825 similar to UP|Q9ZW85 (Q9ZW85) 3-isopropylmalate dehydra... 27 3.5
TC220495 similar to UP|Q6NKR3 (Q6NKR3) At3g55600, partial (50%) 27 3.5
TC216928 similar to UP|Q9SVA6 (Q9SVA6) GTP-binding-like protein,... 27 3.5
TC215112 27 3.5
TC219649 weakly similar to UP|Q95JD1 (Q95JD1) Basic proline-rich... 27 3.5
TC216927 homologue to UP|Q9SVA6 (Q9SVA6) GTP-binding-like protei... 27 3.5
>TC204056 similar to UP|Q9ZXL1 (Q9ZXL1) Orf15, partial (7%)
Length = 1035
Score = 279 bits (714), Expect = 4e-76
Identities = 135/168 (80%), Positives = 149/168 (88%)
Frame = +1
Query: 1 MGEFTIQISNELVNQLVDDPVPKKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPVQS 60
MGEFTIQISN+LVNQLVDD VPKKK R+ RRKVA+ETEKPQS T KP++A PGWPVQS
Sbjct: 229 MGEFTIQISNDLVNQLVDDAVPKKKTRKTRRKVARETEKPQSNETIKPDSAVTPGWPVQS 408
Query: 61 PLFLPAKPPVQPADPEIDGIRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDKEYKLP 120
PLFLPA PVQP E++GI+SVL+ESE+VLE LQKQEENMLQEVTQKAKDLHDKEYKLP
Sbjct: 409 PLFLPATLPVQPVHSELEGIQSVLQESERVLERLQKQEENMLQEVTQKAKDLHDKEYKLP 588
Query: 121 NPKPEPCIAERLATLSCYKEHIKDPLKCSAFVTNFAGCLRKFGRSRDK 168
NPKPEPC+AERLATLSCYKEHIKDPLKC++ VT FA CLR+FGR DK
Sbjct: 589 NPKPEPCMAERLATLSCYKEHIKDPLKCASLVTGFADCLRRFGRLGDK 732
>TC204060 similar to UP|Q9G8K7 (Q9G8K7) NADH dehydrogenase subunit 2
(Fragment), partial (5%)
Length = 437
Score = 75.1 bits (183), Expect = 1e-14
Identities = 36/42 (85%), Positives = 39/42 (92%)
Frame = +1
Query: 1 MGEFTIQISNELVNQLVDDPVPKKKIRRNRRKVAKETEKPQS 42
MGEFTIQISN+LVNQLVDD VPKKK R+ RRKVA+ETEKPQS
Sbjct: 307 MGEFTIQISNDLVNQLVDDAVPKKKTRKTRRKVARETEKPQS 432
>TC234312 similar to UP|Q6T624 (Q6T624) Superoxide dismutase, partial (7%)
Length = 475
Score = 30.8 bits (68), Expect = 0.32
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = +1
Query: 33 VAKETEKPQSKVTGKPENAAAPGWPVQSPLFLPAKPPVQPADPEIDGIRSVLRESEKVLE 92
VA+E P K T EN A V A+PP D ++G +L E+EK+ E
Sbjct: 37 VAEEAIIPDDKDT---ENLAKEKTEVS------AEPPPALQDRGLNGDSKLLEENEKLRE 189
Query: 93 SLQK------QEENMLQEVTQKAKDLHDK 115
++K ++ +++ ++T + KDL K
Sbjct: 190 MMKKLLEAGNEQLSVISDLTVRVKDLEKK 276
>TC227244 similar to UP|Q941A9 (Q941A9) At1g26300/F28B23_4, partial (67%)
Length = 1408
Score = 30.8 bits (68), Expect = 0.32
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +1
Query: 20 PVPKKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPVQSPL---FLPAKPPVQPADPE 76
P+ K RNRR + + P+ + P +A P SP FLP PP+ P P
Sbjct: 199 PISSPKPPRNRR--SSPPKPPRRPTSSNPPRSARPTRSSPSPTPSPFLPNSPPLPPPPPP 372
Query: 77 I 77
+
Sbjct: 373 L 375
>TC204109 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%)
Length = 816
Score = 30.0 bits (66), Expect = 0.55
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 3/47 (6%)
Frame = +3
Query: 19 DPVPKKKIRRNRRKVAKETEKPQSKVTGKPEN---AAAPGWPVQSPL 62
DP P ++ + K A + S V+ +PEN A+AP P SPL
Sbjct: 138 DPAPPRRPPQGAAKPASNSPSAVSPVSSRPENTPSASAPVLPFTSPL 278
>TC216870 UP|Q6SS58 (Q6SS58) Bindin (Fragment), partial (7%)
Length = 696
Score = 30.0 bits (66), Expect = 0.55
Identities = 18/62 (29%), Positives = 31/62 (49%)
Frame = +2
Query: 65 PAKPPVQPADPEIDGIRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDKEYKLPNPKP 124
P PP + DP + G+++ KVL S ++++E M +EV + + + P P P
Sbjct: 410 PPPPPTEKKDPNVSGVQA------KVLAS-KRRKEAMKEEVARLRERGKSVNKQQPPPPP 568
Query: 125 EP 126
P
Sbjct: 569 PP 574
>TC204652 similar to UP|H1_PEA (P08283) Histone H1, partial (81%)
Length = 1347
Score = 29.6 bits (65), Expect = 0.71
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Frame = +3
Query: 20 PVPKKKIRRNRRKVAKETEKPQSKVTGKPENA---------AAPGWPVQSPLFLPAKPPV 70
P P K + AK KP++ KP+ A AA P +PAKP
Sbjct: 624 PKPAAKPKAKAPAKAKPAAKPKASAAAKPKPAAAKPKAAKPAAKSKPAAKTKAVPAKPAA 803
Query: 71 QPADPEIDGIRSVLRES 87
+P + R+ R S
Sbjct: 804 KPKAKPVKASRTSTRTS 854
>BG363363
Length = 401
Score = 29.6 bits (65), Expect = 0.71
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Frame = +1
Query: 4 FTIQISNELVNQLVDDPVPKKKIRRNRRKVAKETEKPQSKVTGKPEN---------AAAP 54
F I ISN+ N + KKK ++ ++K K+ +K + K K N
Sbjct: 70 FAIIISNKAANSICVQKKKKKKKKKKKKKKKKKKKKKKKKKKLKKNNKKKNKKKKKKXXL 249
Query: 55 GWPVQSPLFLPAKP 68
+P SPL P P
Sbjct: 250 XFPFFSPLTQPKNP 291
>TC225703 homologue to UP|Q9ZRD8 (Q9ZRD8) GMFP5 (Fragment), partial (79%)
Length = 1098
Score = 28.9 bits (63), Expect = 1.2
Identities = 34/168 (20%), Positives = 64/168 (37%), Gaps = 23/168 (13%)
Frame = +3
Query: 20 PVPKKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPVQSPLFLPAKPPVQPADPEIDG 79
P+ ++ R + ++ +E E+P+++ KPE AAA P+ P V D +G
Sbjct: 21 PLSQQYSIRQKHQMGEEKEQPKNETEKKPEEAAAAPKKDDGPI-----PVVYKLDLHCEG 185
Query: 80 -IRSVLR---------------ESEKVLESLQKQEENMLQEVTQKAKDLHD-------KE 116
++ + R S KV + + E + ++ ++ K D KE
Sbjct: 186 CVKKIKRTCRHFQGVETVKADLSSNKVTVTGKLDAEKLRDKIAERTKKKVDIISAPPKKE 365
Query: 117 YKLPNPKPEPCIAERLATLSCYKEHIKDPLKCSAFVTNFAGCLRKFGR 164
PE + E+ +E K+ + + GC+ K R
Sbjct: 366 AAATENPPEKKVEEKKPEEKKPEEKPKESMVVLKIKLHCDGCIAKIRR 509
>TC231666 weakly similar to UP|A4E1_HUMAN (Q9UPM8) Adapter-related protein
complex 4 epsilon 1 subunit (Epsilon subunit of AP-4)
(AP-4 adapter complex epsilon subunit), partial (7%)
Length = 535
Score = 28.5 bits (62), Expect = 1.6
Identities = 16/46 (34%), Positives = 24/46 (51%)
Frame = -2
Query: 59 QSPLFLPAKPPVQPADPEIDGIRSVLRESEKVLESLQKQEENMLQE 104
+SPL P+ P A P IDG + + E +K +K+E LQ+
Sbjct: 150 ESPLSAPSPPASSAAPPLIDGRKGTMCEKKK---KKKKRERRSLQQ 22
>TC220050 similar to UP|CH60_MYCFA (Q49155) 60 kDa chaperonin (Protein Cpn60)
(groEL protein) (65 kDa heat shock protein) (Fragment),
partial (13%)
Length = 1204
Score = 28.1 bits (61), Expect = 2.1
Identities = 13/23 (56%), Positives = 15/23 (64%), Gaps = 1/23 (4%)
Frame = +2
Query: 54 PGWPVQSPLFLPAKPP-VQPADP 75
PG PVQ P+ LP PP +P DP
Sbjct: 695 PGMPVQLPIDLPLPPPGWKPGDP 763
>TC228325 similar to UP|Q9FDV5 (Q9FDV5) Ethylene insensitive (EIN3/EIL)-like
transcription regulator, partial (40%)
Length = 1693
Score = 28.1 bits (61), Expect = 2.1
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +2
Query: 42 SKVTGKPENAAAPGWPVQSPLFLPAKPPVQPADPEIDGIRSVLRESEKVLESLQKQEENM 101
S +TG P PG PV++ + D DGI SV + + + + + +
Sbjct: 515 SGITGVP-----PGVPVENRQAATSSASNYDVDGTDDGIGSVSSKENRRNQFMDTEPSDN 679
Query: 102 LQEVTQKAKDLHDKEYKLPNPK 123
L+ V + +D D+ K P PK
Sbjct: 680 LRRVRKSGQDT-DQAKKQPRPK 742
>TC204103 similar to UP|Q75QC2 (Q75QC2) Glutamate-rich protein, partial (38%)
Length = 845
Score = 27.7 bits (60), Expect = 2.7
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Frame = +3
Query: 37 TEKPQSKVT--GKPENAAAPGWPVQSPLFLPAKPPVQ----PADPEIDGIRSVLRESEKV 90
TE+P+ + T K E A + + KP V+ P E + ++ +E+E
Sbjct: 240 TEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPERTEEEEVKEETKETESA 419
Query: 91 LESLQKQEENMLQEVTQKAK 110
QKQEEN E ++ K
Sbjct: 420 PVEEQKQEENKPAETVEETK 479
>BE059119 similar to PIR|T11846|T118 pathogenesis-related protein 3 -
kidney bean, partial (50%)
Length = 378
Score = 27.7 bits (60), Expect = 2.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 11 ELVNQLVDDPVPKKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPV 58
EL N L P KKK ++ ++K K+ +KP P G P+
Sbjct: 38 ELFNLLFLQPKKKKKKKKKKKKKKKKKKKPSVLKPNNPVGGKPRGEPL 181
>TC226825 similar to UP|Q9ZW85 (Q9ZW85) 3-isopropylmalate dehydratase, small
subunit, partial (71%)
Length = 1121
Score = 27.3 bits (59), Expect = 3.5
Identities = 13/46 (28%), Positives = 24/46 (51%)
Frame = +2
Query: 3 EFTIQISNELVNQLVDDPVPKKKIRRNRRKVAKETEKPQSKVTGKP 48
+ ++ S+ L+ + + P PK RNR V+ +T + QS + P
Sbjct: 68 KLSLSHSHTLLPRFLSFPTPKSSNPRNRVAVSLQTPRAQSAASASP 205
>TC220495 similar to UP|Q6NKR3 (Q6NKR3) At3g55600, partial (50%)
Length = 711
Score = 27.3 bits (59), Expect = 3.5
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +1
Query: 8 ISNELVNQLVDDPVPKKKIRRN--RRKVAKETEKPQ 41
I+++LVN ++D VP+K RN + K ++ EK Q
Sbjct: 292 IASKLVNHVIDTQVPEKDFERNFVKEKHSEIEEKKQ 399
>TC216928 similar to UP|Q9SVA6 (Q9SVA6) GTP-binding-like protein, partial
(25%)
Length = 354
Score = 27.3 bits (59), Expect = 3.5
Identities = 12/28 (42%), Positives = 18/28 (63%)
Frame = -2
Query: 58 VQSPLFLPAKPPVQPADPEIDGIRSVLR 85
++SPL + +KP P P +G+RS LR
Sbjct: 278 LESPLLVTSKPSPAPPAPFDEGVRSSLR 195
>TC215112
Length = 1736
Score = 27.3 bits (59), Expect = 3.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 23 KKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPVQSPLFL 64
KKK ++ ++K K+ +K + G +P W V SP FL
Sbjct: 216 KKKKKKKKKKKKKKKKKKKKTFWGGAPPQISPLWGVFSPPFL 91
Score = 26.6 bits (57), Expect = 6.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 23 KKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPVQSPLFLP 65
KKK ++ ++K K+ +K + K AAP +P F P
Sbjct: 226 KKKKKKKKKKKKKKKKKKKKKKKNFLGGXAAPNFPFMGGFFPP 98
>TC219649 weakly similar to UP|Q95JD1 (Q95JD1) Basic proline-rich protein,
partial (37%)
Length = 750
Score = 27.3 bits (59), Expect = 3.5
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +2
Query: 46 GKPENAAAPGWPVQSPLFLPAKPPVQPADP 75
G P PG P P LP PP +PA P
Sbjct: 239 GSPP*LPPPGPPPLGPAPLPGPPPPRPAPP 328
>TC216927 homologue to UP|Q9SVA6 (Q9SVA6) GTP-binding-like protein, complete
Length = 1771
Score = 27.3 bits (59), Expect = 3.5
Identities = 12/28 (42%), Positives = 18/28 (63%)
Frame = -2
Query: 58 VQSPLFLPAKPPVQPADPEIDGIRSVLR 85
++SPL + +KP P P +G+RS LR
Sbjct: 405 LESPLLVTSKPSPAPPAPFDEGVRSSLR 322
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,903,565
Number of Sequences: 63676
Number of extensions: 90433
Number of successful extensions: 681
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of query: 168
length of database: 12,639,632
effective HSP length: 90
effective length of query: 78
effective length of database: 6,908,792
effective search space: 538885776
effective search space used: 538885776
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0126.13