BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0122.3
(1172 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC219185 similar to UP|Q9M9Y0 (Q9M9Y0) F4H5.19 protein, partial ... 220 3e-57
TC219186 weakly similar to UP|Q9M9Y0 (Q9M9Y0) F4H5.19 protein, p... 105 9e-23
TC217478 similar to UP|Q9SHN6 (Q9SHN6) F7F22.4, partial (37%) 71 3e-12
AW278289 66 1e-10
CO984939 42 0.002
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 42 0.002
TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%) 42 0.002
BM954939 40 0.008
TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 39 0.013
TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g4... 38 0.023
TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1... 38 0.023
TC225986 weakly similar to UP|Q9W1I6 (Q9W1I6) CG18426-PA (LD1203... 38 0.030
TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 37 0.051
TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 37 0.051
TC227637 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, p... 37 0.051
TC203256 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I,... 35 0.15
TC206107 weakly similar to UP|Q7RH28 (Q7RH28) Mature-parasite-in... 35 0.25
TC217059 similar to UP|Q8L7W3 (Q8L7W3) At2g29210/F16P2.41, parti... 34 0.43
TC207266 weakly similar to UP|O49657 (O49657) Predicted protein,... 34 0.43
TC220333 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, ... 33 0.56
>TC219185 similar to UP|Q9M9Y0 (Q9M9Y0) F4H5.19 protein, partial (8%)
Length = 456
Score = 220 bits (560), Expect = 3e-57
Identities = 105/132 (79%), Positives = 119/132 (89%)
Frame = +2
Query: 1002 QVEVPQFYNPLTTALQPRDQTWKGMRTVAELRRDHDLPVPVNKDSLYKKIERKPRKFNPL 1061
QVEVPQFYNPLTTALQPRD TWKGM+TVAELRR+H+L +PVNKDSLYKKIERKPRKFNP+
Sbjct: 2 QVEVPQFYNPLTTALQPRDMTWKGMKTVAELRREHNLAIPVNKDSLYKKIERKPRKFNPV 181
Query: 1062 VVPRSLQERLPFASKPKETPKRNQPLLEQRRQKGVVMEPRERKVLALVQHIQLINHDKMK 1121
V+P+SLQ LPFASKPK+ KR +PLLE+RR +GVVMEPRERKV LVQH+QLI+ +KMK
Sbjct: 182 VIPKSLQASLPFASKPKDISKRKKPLLEERRARGVVMEPRERKVHTLVQHLQLIDREKMK 361
Query: 1122 KRKLKENEKRKA 1133
KRKLKE KRKA
Sbjct: 362 KRKLKEENKRKA 397
>TC219186 weakly similar to UP|Q9M9Y0 (Q9M9Y0) F4H5.19 protein, partial (4%)
Length = 476
Score = 105 bits (263), Expect = 9e-23
Identities = 53/74 (71%), Positives = 62/74 (83%)
Frame = +3
Query: 1098 MEPRERKVLALVQHIQLINHDKMKKRKLKENEKRKAHEAEKAKEEQLSKKRRREERREKY 1157
MEPRERKV LVQH+QLI+ +KMKKRKLKE KRKA EAE AKEE L +KRRREERR+KY
Sbjct: 15 MEPRERKVHTLVQHLQLIDREKMKKRKLKEENKRKALEAESAKEELLLRKRRREERRDKY 194
Query: 1158 RTQDKSSKKMRRSE 1171
R + K +KK+RR+E
Sbjct: 195 RKEAKQNKKIRRAE 236
>TC217478 similar to UP|Q9SHN6 (Q9SHN6) F7F22.4, partial (37%)
Length = 1391
Score = 70.9 bits (172), Expect = 3e-12
Identities = 75/330 (22%), Positives = 144/330 (42%), Gaps = 35/330 (10%)
Frame = +2
Query: 665 EEEN--DDVYGDFEDLETGEKIENNQTDDATHNGDDL-----EAETRRLKKL-ALQEDGG 716
+EEN + GD L G+ E D D+L E E + LK+ A E+
Sbjct: 32 QEENKYSEFDGDGASLRLGDSDEETDNDPVMMEVDNLTREKIEDELKELKEAHAADEEFP 211
Query: 717 NENE-----------AKFRRGQPNETSYFDKLKEEIELQKQMNIAELND--------LDE 757
+E + AK+R + TS +D KE + Q I E ++ L +
Sbjct: 212 DEVDTPLDVPARKRFAKYRGLKSFRTSSWDP-KESLP-QDYARIFEFDNFKRTQKHVLAK 385
Query: 758 ATRLEIEG----FRTGTYVRLEVHDVPCEMVEYFDPYH---PILIGGVGLGEENVGYMQA 810
A L+ E G+Y RL + VP + P+ G+ E V +
Sbjct: 386 ALELDHENREDCISVGSYARLHIMGVPSAVASKLSLLAKTIPVTACGLLKHESKVSVLHF 565
Query: 811 RLKRHRWHKKVLKTRDPIIVSAGWRRYQTTPVYAIEDHN-GRHRMLKYTPEHMHCLAMFY 869
+K+H + +K+++ +I G+R++ P+++ E N +++M ++ +A Y
Sbjct: 566 SVKKHEAYDAPIKSKEELIFHVGFRQFVGWPIFSSEFINTDKNKMERFLHAGRFSVASIY 745
Query: 870 GPLAPPNTGIVAVQNLSNNQATFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTALI 929
P++ P + ++ + A + A + + I+K++ L GYP ++ K+ A +
Sbjct: 746 APISFPPLPTIILKRAGEDAAP-AVAAVGSLKTVDADRIILKRVILTGYPQRVSKRKASV 922
Query: 930 KEMFTSDLEIARFEGAAIRTVSGIRGQVKK 959
+ MF + ++ F+ + T G+RG++K+
Sbjct: 923 RHMFYNPEDVKWFKPVELYTKRGLRGRIKE 1012
>AW278289
Length = 404
Score = 65.9 bits (159), Expect = 1e-10
Identities = 30/46 (65%), Positives = 39/46 (84%)
Frame = +1
Query: 1075 SKPKETPKRNQPLLEQRRQKGVVMEPRERKVLALVQHIQLINHDKM 1120
+KPK+ KR +PLLE+RR +GVVMEPRERKV LVQH+QLI+ +K+
Sbjct: 7 AKPKDISKRKKPLLEERRARGVVMEPRERKVHTLVQHLQLIDREKV 144
>CO984939
Length = 219
Score = 41.6 bits (96), Expect = 0.002
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = -3
Query: 481 NKDHLEEHIEFHNGRRRRRAIFGND 505
N HL+EHI+FH+GR RRRAIF ND
Sbjct: 199 NGVHLQEHIDFHDGRWRRRAIFEND 125
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 41.6 bits (96), Expect = 0.002
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 12/200 (6%)
Frame = +2
Query: 377 ITRKGNERDIGEVLVRSLQETKYPINEKLENSMINLFAQSSEALAEAQGANMDVEQDGII 436
I++ ER++ L ++ TK ++E++E + + + + + E+ +D +D
Sbjct: 170 ISKSRGERNVLWFLDSKMKATK-ELSEQVEENEVKVLVEEDDEEYESVDEVVDDAEDDED 346
Query: 437 ETVNYNEMDSDGGSESSDQDEADAMTGSGLPDQAEDDAAGDKSTNKDHLEEHIEFHNGRR 496
E E D D + +D +E DA G D +D+ GD + ++ + +
Sbjct: 347 E----EEDDDDDEGDDNDDEEDDAPDGGDDDDDEDDEEEGDVQRGGEPDDDDNDSDDDSD 514
Query: 497 RRRAIFGNDADQSDLMDSSGNED----------GSASDDGASSD--SESLNEEEEDDVMG 544
D D+ D + ED +A ++ ASSD E EEEE+DV
Sbjct: 515 D-----DEDEDEEDEEEQGEEEDLGTEYLIRPLETAEEEEASSDFEPEENGEEEEEDVDD 679
Query: 545 NVSKWKESLAERTLSQKTPS 564
+ E+ +R S K S
Sbjct: 680 EDCEKAEAPPKRKRSDKDDS 739
Score = 37.0 bits (84), Expect = 0.051
Identities = 38/143 (26%), Positives = 61/143 (42%)
Frame = +2
Query: 583 ENDSSEDEESDGDFFEPIEEVKKKNVRDGLNDGNVNTEDYSKCAQFMDKRWDKKDNEEIR 642
++D ED+E +GD E D ND + +++D D+ D++D EE
Sbjct: 419 DDDDDEDDEEEGDVQRGGEP------DDDDNDSDDDSDD--------DEDEDEEDEEEQG 556
Query: 643 NRFVTGNLAKAALRNGLPKATTEEENDDVYGDFEDLETGEKIENNQTDDATHNGDDLEAE 702
G + +R P T EEE + DFE E GE+ E + D+ +
Sbjct: 557 EEEDLGT--EYLIR---PLETAEEE--EASSDFEPEENGEEEEEDVDDEDCEKAEAPPKR 715
Query: 703 TRRLKKLALQEDGGNENEAKFRR 725
R K + +DGG ++E +R
Sbjct: 716 KRSDKDDSDDDDGGEDDERPSKR 784
>TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%)
Length = 1005
Score = 41.6 bits (96), Expect = 0.002
Identities = 47/181 (25%), Positives = 72/181 (38%), Gaps = 6/181 (3%)
Frame = +3
Query: 582 KENDSSEDEESDGDFFEPIEEVKKKNVRDGLNDGNVNTEDYSKCAQFMDKRWDKKDNEEI 641
KEND +DEE +E KKK +D DG + E K K D KD+EE
Sbjct: 105 KENDGEDDEEK--------KEKKKKEKKD--KDGKTDAEKIKK------KEDDGKDDEEK 236
Query: 642 RNRFVTGNLAKAALRNGLPKATTEEEN----DDVYGDFEDLETGEKIENNQTDDATHNGD 697
+ + + A G +E N D GD + E EK + +
Sbjct: 237 KEKKKKYDKIDAXKVKGKEDDGKDEGNKEKKDKEKGDGDGEEKKEKKDKEKEKKKEKKDK 416
Query: 698 DLEAET--RRLKKLALQEDGGNENEAKFRRGQPNETSYFDKLKEEIELQKQMNIAELNDL 755
D E +T + K ++D GN+ + K ++ + + K KEE E + + D+
Sbjct: 417 DEETDTLKEKGKNDEGEDDEGNKKKKKDKKEKEKDHKKEKKDKEEGEKEDSKVEVSVRDI 596
Query: 756 D 756
D
Sbjct: 597 D 599
>BM954939
Length = 420
Score = 39.7 bits (91), Expect = 0.008
Identities = 32/115 (27%), Positives = 56/115 (47%), Gaps = 6/115 (5%)
Frame = +1
Query: 431 EQDGI---IETVNYNEMDSDGGSESSDQDEADAMTGSGLPDQAEDDAAGD---KSTNKDH 484
+QDG+ E +++E++S GSE DQDE + +G L D+ ED+ + + + N+D+
Sbjct: 58 DQDGVNSGSELQDHDEVNS--GSELQDQDEDNLGSGDKLKDKNEDNMSSECEPQEQNEDN 231
Query: 485 LEEHIEFHNGRRRRRAIFGNDADQSDLMDSSGNEDGSASDDGASSDSESLNEEEE 539
+ E DQ + +SG+E +DG +D L E+E+
Sbjct: 232 VTSGSELQ--------------DQGEDNVNSGDELQDQVNDGGLNDQSDLKEDED 354
>TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 942
Score = 38.9 bits (89), Expect = 0.013
Identities = 29/104 (27%), Positives = 45/104 (42%), Gaps = 1/104 (0%)
Frame = +1
Query: 439 VNYNEMDSD-GGSESSDQDEADAMTGSGLPDQAEDDAAGDKSTNKDHLEEHIEFHNGRRR 497
+N + DSD G E D D+AD +DD GD+ + + EE +
Sbjct: 364 LNKDASDSDEDGDEEEDDDDADD----------QDDEEGDEDFSGEGEEEADPEDDPEAN 513
Query: 498 RRAIFGNDADQSDLMDSSGNEDGSASDDGASSDSESLNEEEEDD 541
G+D+D D D ++D DD + E +E+EED+
Sbjct: 514 GAG--GSDSDGDDDDDGGDDDDDDNGDDDGEDEEEGEDEDEEDE 639
>TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g47970
{Arabidopsis thaliana;} , partial (39%)
Length = 867
Score = 38.1 bits (87), Expect = 0.023
Identities = 37/143 (25%), Positives = 64/143 (43%), Gaps = 1/143 (0%)
Frame = +1
Query: 581 NKENDSSEDEESDGDFFEPIEEVKKKNV-RDGLNDGNVNTEDYSKCAQFMDKRWDKKDNE 639
++E+D +D GD + +E ++ +V R G D + N +D D+ D++D E
Sbjct: 232 DEEDDDEDDAPDGGDDDDDEDEEEESDVQRGGEPDDDDNDDD--------DEDEDEEDEE 387
Query: 640 EIRNRFVTGNLAKAALRNGLPKATTEEENDDVYGDFEDLETGEKIENNQTDDATHNGDDL 699
E G + +R P T EEE + DFE E GE+ E + D+ +
Sbjct: 388 EQGEEADLGT--EYLIR---PLVTAEEE--EASSDFEPEENGEEEEEDVDDEDGEKSEAP 546
Query: 700 EAETRRLKKLALQEDGGNENEAK 722
R K + +DGG +++ +
Sbjct: 547 PKRKRSDKDDSDDDDGGEDDDER 615
Score = 32.0 bits (71), Expect = 1.6
Identities = 38/143 (26%), Positives = 59/143 (40%), Gaps = 5/143 (3%)
Frame = +1
Query: 427 NMDVEQDGIIETVNYNEMDSDGGSESSDQD---EADAMTGSGLPDQAEDDAAGDKSTNKD 483
+ D + D E + + DGG + D+D E+D G G PD ++D + +D
Sbjct: 205 SFDDDDDNEDEEDDDEDDAPDGGDDDDDEDEEEESDVQRG-GEPDDDDNDDDDEDEDEED 381
Query: 484 HLEEHIEFHNGRRRRRAIFGNDADQSDLMDSSGNEDGSASDDGASSD--SESLNEEEEDD 541
E+ E A G + L+ +A ++ ASSD E EEEE+D
Sbjct: 382 EEEQGEE---------ADLGTEYLIRPLV--------TAEEEEASSDFEPEENGEEEEED 510
Query: 542 VMGNVSKWKESLAERTLSQKTPS 564
V + E+ +R S K S
Sbjct: 511 VDDEDGEKSEAPPKRKRSDKDDS 579
>TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(70%)
Length = 2075
Score = 38.1 bits (87), Expect = 0.023
Identities = 17/57 (29%), Positives = 34/57 (58%)
Frame = +3
Query: 1115 INHDKMKKRKLKENEKRKAHEAEKAKEEQLSKKRRREERREKYRTQDKSSKKMRRSE 1171
+ + K KRKL++ RK + +K K+ + KKRRR+++++K T +S +++
Sbjct: 117 LKNTKKSKRKLRKKR*RKRSKRKKKKKRRTRKKRRRKKKKKKKTTSSNNSSSNSKTK 287
>TC225986 weakly similar to UP|Q9W1I6 (Q9W1I6) CG18426-PA (LD12035p), partial
(13%)
Length = 1553
Score = 37.7 bits (86), Expect = 0.030
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +2
Query: 1101 RERKVLALVQHIQLINHDKMKKRKLKENEKRKAHEAEKAKEEQLSKKRRREERREKYRTQ 1160
+ER+ V+ + +K + +E EK K + EK KE++ +KRR+E ++
Sbjct: 104 KEREQRRRVEEAERQYETYLKDWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDED 283
Query: 1161 DKSSKKMRRS 1170
+ S K+ RRS
Sbjct: 284 EDSRKRWRRS 313
>TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 1090
Score = 37.0 bits (84), Expect = 0.051
Identities = 28/110 (25%), Positives = 43/110 (38%), Gaps = 11/110 (10%)
Frame = -1
Query: 443 EMDSDGGSESSDQDEADAMTGSGLPDQAEDDAAG--DKSTNKDHLEEHIEFHNGRRRRRA 500
E + E D D+ D G G + + +D G + S NK + ++ E G
Sbjct: 598 EGEDGNDDEGDDDDDGDGGFGEGEEELSSEDGGGYGNNSNNKSNSKKAPEGGAGGAEENG 419
Query: 501 IFGNDADQSDLMDSSGNED---------GSASDDGASSDSESLNEEEEDD 541
D D D D ++D G D+ + D E NEE+E+D
Sbjct: 418 EEDEDEDGDDQDDDEDDDDDDDDEEDEGGEEEDEDGAEDEE--NEEDEED 275
>TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 1056
Score = 37.0 bits (84), Expect = 0.051
Identities = 28/109 (25%), Positives = 43/109 (38%), Gaps = 10/109 (9%)
Frame = -3
Query: 443 EMDSDGGSESSDQDEADAMTGSGLPDQAEDDAAG--DKSTNKDHLEEHIEFHNGRRRRRA 500
E + E D D+ D G G + + +D G + S NK + ++ E G
Sbjct: 631 EGEDGNDDEGDDDDDGDGGFGEGEEELSSEDGGGYGNNSNNKSNSKKAPEGGAGGAEENG 452
Query: 501 IFGNDADQSDLMDSSGNED--------GSASDDGASSDSESLNEEEEDD 541
D D D D ++D G D+ + D E NEE+E+D
Sbjct: 451 EEDEDEDGDDQDDDDEDDDDDDEEDEAGEEEDEDGAEDEE--NEEDEED 311
>TC227637 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, partial (8%)
Length = 1330
Score = 37.0 bits (84), Expect = 0.051
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +3
Query: 1119 KMKKRKLKENEKRKAHEAEKAKEEQLSKKRRREERREKYRTQDKSSKKMRRSE 1171
+M++ + K EKR+ E EKAKE L KKR E+ +++ + + +++ E
Sbjct: 702 RMEEEEAKLKEKRRLEEIEKAKEALLRKKRNAEKAQQRAALKAQKEAELKEKE 860
>TC203256 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I, partial (81%)
Length = 1009
Score = 35.4 bits (80), Expect = 0.15
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +3
Query: 1098 MEPRERKVLALVQHIQLINHDKMKKRKLKENEKRKAHEAEKAKEEQLSKKRRREERREK 1156
+E E L L+ + L + K KK+K + EKRK A++ KE + ++ ++E REK
Sbjct: 630 VETSEIVAL*LISLVMLTVYAKKKKKKARGREKRKVKGAKEHKETRKTECNKKEGAREK 806
>TC206107 weakly similar to UP|Q7RH28 (Q7RH28) Mature-parasite-infected
erythrocyte surface antigen, partial (4%)
Length = 650
Score = 34.7 bits (78), Expect = 0.25
Identities = 39/143 (27%), Positives = 69/143 (47%), Gaps = 5/143 (3%)
Frame = +2
Query: 1032 LRRDHDLPVPVNKDSLYKKIERKPRKFNPLVVP---RSLQERLPFASKPKETPKRNQPLL 1088
LRR H L K L +R+PR P RS + A+ P+ +R +PL+
Sbjct: 197 LRRTHHL-----KPKLKTSKQRRPRVV*KTRFPSRFRSRRRPTWLATSPR---RRRKPLM 352
Query: 1089 EQRRQKGVVMEPRERKVLALV--QHIQLINHDKMKKRKLKENEKRKAHEAEKAKEEQLSK 1146
R + + R + L+ Q+ + N + ++RKLK + R+ ++ K + + +
Sbjct: 353 SSRS----LFKKRSTTMS*LLPSQNRRRRNQQQRRRRKLK*QKGRRKLKS*KRRRKWK*R 520
Query: 1147 KRRREERREKYRTQDKSSKKMRR 1169
KRRR+ + +K R + KS K+ R+
Sbjct: 521 KRRRKLK*QKRRRKLKS*KRRRK 589
>TC217059 similar to UP|Q8L7W3 (Q8L7W3) At2g29210/F16P2.41, partial (9%)
Length = 1565
Score = 33.9 bits (76), Expect = 0.43
Identities = 20/46 (43%), Positives = 29/46 (62%), Gaps = 1/46 (2%)
Frame = +1
Query: 1119 KMKKRKLKENEKRKAHEAEKAKEEQLSKKRRREERR-EKYRTQDKS 1163
K KR+ KE +K + E + +EE K+RRREERR EK + + K+
Sbjct: 1036 KEAKRRRKEEKKLQKEEKRRRREE---KRRRREERRAEKLKMKSKT 1164
>TC207266 weakly similar to UP|O49657 (O49657) Predicted protein, partial (9%)
Length = 1036
Score = 33.9 bits (76), Expect = 0.43
Identities = 20/58 (34%), Positives = 36/58 (61%), Gaps = 1/58 (1%)
Frame = -2
Query: 1113 QLINHDKMKKRKLKENEKRKAHE-AEKAKEEQLSKKRRREERREKYRTQDKSSKKMRR 1169
+LI +KKRK NE+++ H+ +++ ++ KKRR++++ + T SSK MRR
Sbjct: 180 ELIRWCGIKKRK---NERKRRHKWQQRSGRGKMKKKRRKKKKGSELMT*RSSSKSMRR 16
>TC220333 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, partial (3%)
Length = 536
Score = 33.5 bits (75), Expect = 0.56
Identities = 19/49 (38%), Positives = 31/49 (62%)
Frame = +1
Query: 1118 DKMKKRKLKENEKRKAHEAEKAKEEQLSKKRRREERREKYRTQDKSSKK 1166
D KKR+ K KRK + +K KEE+ K+ ++EE++E+ + + K KK
Sbjct: 85 DLPKKRRKK---KRKRRKRKKKKEEK--KEEKKEEKKEEKKEEKKEEKK 216
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,157,522
Number of Sequences: 63676
Number of extensions: 569578
Number of successful extensions: 4408
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 3075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3921
length of query: 1172
length of database: 12,639,632
effective HSP length: 108
effective length of query: 1064
effective length of database: 5,762,624
effective search space: 6131431936
effective search space used: 6131431936
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0122.3