TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0121b.6
         (378 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza s...   141  4e-34
TC215239 UP|H3_PEA (P02300) Histone H3, partial (39%)                  35  0.073
TC224067                                                               34  0.12
AW666348 similar to GP|20302596|dbj Ser/Thr kinase {Arabidopsis ...    30  2.3
BF008981                                                               28  5.2
TC211655                                                               28  5.2
TC229994                                                               28  5.2
TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and...    28  8.9

>BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza sativa
           (japonica cultivar-group)}, partial (7%)
          Length = 426

 Score =  141 bits (356), Expect = 4e-34
 Identities = 68/136 (50%), Positives = 91/136 (66%)
 Frame = +2

Query: 204 KSDEDSGVNAEWVTSEFLNDYKCSGIPNHQIKLKVGVPIMLIRNIDQTAGLCNGTRMIVN 263
           KSD         +T+EF+N    S +PNH+IKLKV   IML+RN+DQ  GLCN TR+I+ 
Sbjct: 17  KSDTIESEGFSTITTEFINSLSTSRLPNHKIKLKVDSRIMLLRNLDQNEGLCNSTRLIIT 196

Query: 264 ALTKYIIVAIVLNRNTMGETTFIPRMSLTPSNADIPFKFQRRQFPVILCFAMTINKSQGQ 323
               +II A +++    G T +IPR++ +PS +  PFK  RR+FP+I+ +AMTINKSQGQ
Sbjct: 197 MFADHIIEAKIMSGKGQGNTVYIPRLATSPSQSPWPFKLIRRKFPIIVSYAMTINKSQGQ 376

Query: 324 SSTHVGLYLPRPVFTH 339
               VGLYLP PVF+H
Sbjct: 377 LLASVGLYLPTPVFSH 424


>TC215239 UP|H3_PEA (P02300) Histone H3, partial (39%)
          Length = 340

 Score = 34.7 bits (78), Expect = 0.073
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = -3

Query: 303 QRRQFPVILCFAMTINKSQGQS 324
           QR  FP+I+CFAMT NKS+GQ+
Sbjct: 338 QR**FPLIVCFAMTTNKSEGQT 273


>TC224067 
          Length = 415

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -2

Query: 300 FKFQRRQFPVILCFAMTINKSQGQSSTHV-GLYLPRPVFTHVQLYVALSRV 349
           FKFQ      ++C+ M INKS GQ+ + V G+ LPRP       YV L++V
Sbjct: 387 FKFQ--DVNSLVCYTMKINKSHGQTLSQVGGVLLPRPN**SHGQYVTLNQV 241


>AW666348 similar to GP|20302596|dbj Ser/Thr kinase {Arabidopsis thaliana},
           partial (10%)
          Length = 420

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 24/70 (34%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
 Frame = -3

Query: 277 RNTMGETTFIP-RMSLTPSNADIPFKFQRRQFPVI-LCFAMTINKSQGQSSTHVGLYLPR 334
           R+T+   TFI    SL  S +  PF++Q R FP+  +C++  I  S  Q   H   +   
Sbjct: 223 RHTIVTETFISITRSLINSWSWSPFRYQGRNFPIYHICYSGNILISHVQLCNHFSCH--- 53

Query: 335 PVFTHVQLYV 344
             +  VQLYV
Sbjct: 52  -TYCCVQLYV 26


>BF008981 
          Length = 419

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = +2

Query: 143 PLLEIVNFSYPKLLFNLEKNSFFQERAILAPTLESVEEINNFMLAMILGEEIE-YLNCDT 201
           P L  V  +Y KL   L++N   Q  +I   +L  VE +  F+ +++L + +  + +  +
Sbjct: 116 PFLISVGGNY-KLWLELDRNGAEQNYSI--SSLLIVEVVLTFL*SVMLVKSLSLHSHAFS 286

Query: 202 PCK-SDEDSGVNAEWVTSEFLNDYKCSGIPNH 232
            C  S  + G N  WV  + LN   CS  P +
Sbjct: 287 SCSFSASEIGTNPSWVPLKSLNSLCCSSKPRN 382


>TC211655 
          Length = 596

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 16/46 (34%), Positives = 25/46 (53%)
 Frame = -2

Query: 121 QPLMKLNHSFRFLLIFIEPCKDPLLEIVNFSYPKLLFNLEKNSFFQ 166
           +PL K   SF + ++F+  CK PLL    F   K L ++  + FF+
Sbjct: 526 KPLSKDPSSFMYHVLFLSSCKTPLLLSAKFMVRKYL-HITFSMFFE 392


>TC229994 
          Length = 459

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = +3

Query: 143 PLLEIVNFSYPKLLFNLEKNSFFQERAILAPTLESVEEINNFMLAMILGEEIE-YLNCDT 201
           P L  V  +Y KL   L++N   Q  +I   +L  VE +  F+ +++L + +  + +  +
Sbjct: 93  PFLISVGGNY-KLWLELDRNGAEQNYSI--SSLLIVEVVLTFL*SVMLVKSLSLHSHAFS 263

Query: 202 PCK-SDEDSGVNAEWVTSEFLNDYKCSGIPNH 232
            C  S  + G N  WV  + LN   CS  P +
Sbjct: 264 SCSFSASEIGTNPSWVPLKSLNSLCCSSKPRN 359


>TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and
           recombination protein PIF1, mitochondrial precursor,
           partial (8%)
          Length = 596

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +2

Query: 313 FAMTINKSQGQSSTHVGLYLPRPVFTHVQLYVALSRVKS 351
           +AM+I+K QG +   V   L R  F    +YVALSRV+S
Sbjct: 5   WAMSIHKCQGMTLERVHTDLSR-AFGCGMVYVALSRVRS 118


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.343    0.151    0.491 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,282,406
Number of Sequences: 63676
Number of extensions: 247710
Number of successful extensions: 2156
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2156
length of query: 378
length of database: 12,639,632
effective HSP length: 99
effective length of query: 279
effective length of database: 6,335,708
effective search space: 1767662532
effective search space used: 1767662532
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 60 (27.7 bits)