BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0118a.3
(328 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CO980258 307 5e-84
TC218132 119 2e-27
TC218133 weakly similar to GB|AAB68431.1|500822|YSCH9780 Yhr004c... 102 3e-22
BG239344 92 2e-19
BG650549 84 9e-17
TC234882 83 1e-16
TC225807 80 1e-15
TC227720 weakly similar to UP|Q9LG22 (Q9LG22) F14J16.15, partial... 74 7e-14
BE331073 weakly similar to GP|15289850|dbj P0003E08.14 {Oryza sa... 45 6e-05
TC225806 43 2e-04
TC234537 similar to UP|Q76DY1 (Q76DY1) AG-motif binding protein-... 31 0.67
TC234178 31 0.67
TC224322 30 1.5
TC230374 29 2.5
TC235033 28 4.3
TC226762 similar to UP|GPX1_PEA (O24296) Phospholipid hydroperox... 28 4.3
TC205918 similar to UP|Q94F39 (Q94F39) AT3g29575/MWE13_2, partia... 28 4.3
TC229011 weakly similar to UP|Q9VTS4 (Q9VTS4) CG5684-PA (GH06247... 28 5.7
TC211343 similar to UP|Q6WJ05 (Q6WJ05) Central motor kinesin 1, ... 28 5.7
TC222071 similar to UP|Q40319 (Q40319) Pectate lyase homolog , p... 28 5.7
>CO980258
Length = 699
Score = 307 bits (786), Expect = 5e-84
Identities = 150/184 (81%), Positives = 165/184 (89%), Gaps = 2/184 (1%)
Frame = -1
Query: 144 PLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEFL 203
PLLPP S R+TVFLDLDETLVHS+ +PPPE FDFVVRPVIDG PM+FYV KRPGVDEFL
Sbjct: 690 PLLPPLFSVRKTVFLDLDETLVHSHPSPPPERFDFVVRPVIDGEPMDFYVLKRPGVDEFL 511
Query: 204 EALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGRDL 263
E+LAAK+EVVVFTAAL+EYAS+VLDR+DRNR +SHRLYRDSC+ DGKLVKDL+ GRDL
Sbjct: 510 ESLAAKYEVVVFTAALKEYASMVLDRLDRNRFISHRLYRDSCRNIDGKLVKDLNETGRDL 331
Query: 264 KRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDC--CDDMRDAVKQF 321
KRVVIVDDNPNSFANQPENAILIRPFVDD+ DRELWKLR FF+G DC CDDMRDAVK +
Sbjct: 330 KRVVIVDDNPNSFANQPENAILIRPFVDDILDRELWKLRSFFNGSDCCECDDMRDAVKHY 151
Query: 322 FTVQ 325
TVQ
Sbjct: 150 VTVQ 139
>TC218132
Length = 1330
Score = 119 bits (298), Expect = 2e-27
Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 1/172 (0%)
Frame = +3
Query: 155 TVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEFLEALAAKFEVVV 214
T+ LDLDETLVHS T P E DF + YV+ RP + +FLE ++ FE+++
Sbjct: 543 TLVLDLDETLVHS-TLEPCEDVDFTFPVNFNSEEHIVYVRCRPHLKDFLERVSGLFEIII 719
Query: 215 FTAALREYASLVLDRVD-RNRLVSHRLYRDSCKQEDGKLVKDLSLAGRDLKRVVIVDDNP 273
FTA+ YA +L+ +D + ++ HR+YR+SC +G +KDL++ GRDL V+I+D++P
Sbjct: 720 FTASQSIYAEQLLNVLDPKRKIFRHRVYRESCVYVEGNYLKDLTVLGRDLAHVMIIDNSP 899
Query: 274 NSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMRDAVKQFFTVQ 325
+F Q +N I I + DD D+EL L F + + DD+R + + F ++
Sbjct: 900 QAFGFQVDNGIPIESWFDDRSDQELLLLLPFLESLVGVDDVRPLIAKKFNLR 1055
>TC218133 weakly similar to GB|AAB68431.1|500822|YSCH9780 Yhr004cp
{Saccharomyces cerevisiae;} , partial (7%)
Length = 718
Score = 102 bits (253), Expect = 3e-22
Identities = 50/135 (37%), Positives = 87/135 (64%), Gaps = 1/135 (0%)
Frame = +3
Query: 192 YVKKRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVD-RNRLVSHRLYRDSCKQEDG 250
YV+ RP + +FLE ++ FE+++FTA+ YA +L+ +D + ++ HR+YR+SC +G
Sbjct: 3 YVRCRPHLKDFLERVSGLFEIIIFTASQSIYAEQLLNVLDPKRKIFRHRVYRESCVYVEG 182
Query: 251 KLVKDLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDC 310
+KDL++ GRDL V+I+D++P +F Q +N I I + DD D+EL+ L F + +
Sbjct: 183 NYLKDLTVLGRDLAHVIIIDNSPQAFGFQVDNGIPIESWFDDRSDQELFLLLPFLESLVG 362
Query: 311 CDDMRDAVKQFFTVQ 325
DD+R + + F ++
Sbjct: 363 VDDVRPLIAKKFNLR 407
>BG239344
Length = 316
Score = 91.7 bits (226), Expect(2) = 2e-19
Identities = 51/75 (68%), Positives = 57/75 (76%), Gaps = 6/75 (8%)
Frame = +1
Query: 62 IRRNNNRRWRRKTPIKNAVAASSAVLASIHRRITKFFSKLARLSPD---RKRASYKILKK 118
+R NNNRRWRRKTPIKN VAASSA LA+I RRITK FSK+ARLS +K SYKILKK
Sbjct: 91 LRNNNNRRWRRKTPIKNVVAASSAALATIRRRITKLFSKIARLSTSAHKKKATSYKILKK 270
Query: 119 TSPQD---DSICRTL 130
T+ D D+I RTL
Sbjct: 271 TTTTDGELDNIRRTL 315
Score = 21.6 bits (44), Expect(2) = 2e-19
Identities = 13/31 (41%), Positives = 17/31 (53%)
Frame = +2
Query: 27 RHEIFSSLRFLPYPNTKNQAMVSRVKRVPTK 57
RH++ SL + Q MVS+VKR P K
Sbjct: 5 RHQLSLSLSDI-------QIMVSKVKRSPVK 76
>BG650549
Length = 403
Score = 84.0 bits (206), Expect = 9e-17
Identities = 54/123 (43%), Positives = 71/123 (56%), Gaps = 4/123 (3%)
Frame = +2
Query: 144 PLLPPSISHRR---TVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVD 200
P L P S RR T+ LDLDETLVHS T + DF + YVK+RP +
Sbjct: 38 PTLIPKQSPRRKSITLVLDLDETLVHS-TLEHCDDADFTFTVFFNLKEYIVYVKQRPYLH 214
Query: 201 EFLEALAAKFEVVVFTAALREYASLVLDRVDRN-RLVSHRLYRDSCKQEDGKLVKDLSLA 259
FLE ++ FEVV+FTA+ YA +LD +D + R +S R+YR+SC DG KDL++
Sbjct: 215 TFLERVSEMFEVVIFTASQSIYAKQLLDILDPDGRFISRRMYRESCLFSDGNYTKDLTIL 394
Query: 260 GRD 262
G D
Sbjct: 395 GVD 403
>TC234882
Length = 665
Score = 83.2 bits (204), Expect = 1e-16
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Frame = +2
Query: 201 EFLEALAAKFEVVVFTAALREYASLVLDRVDRNR-LVSHRLYRDSCKQEDGKLVKDLSLA 259
EFL ++ FE+++FTA+ R YA +LD +D ++ S R+YR+SC +D + VKDL++
Sbjct: 2 EFLVKVSEMFEIIIFTASKRMYAETLLDVLDPDKKFFSRRVYRESCTWKDRRCVKDLTVL 181
Query: 260 GRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMRDAVK 319
G DL +V I+ + P F Q N I I+ + DD D L L F + + DD+R +
Sbjct: 182 GIDLAKVCIIYNTPEVFRFQVNNGIPIKSWFDDPTDSALMSLLPFLEKLVDVDDVRPLIA 361
Query: 320 QFF 322
+ F
Sbjct: 362 EKF 370
>TC225807
Length = 1324
Score = 80.1 bits (196), Expect = 1e-15
Identities = 68/179 (37%), Positives = 91/179 (49%), Gaps = 25/179 (13%)
Frame = +2
Query: 136 DNDPSPPLPLLPPSISHRR------TVFLDLDETLVHS-NTAPPPESFD----------F 178
D+ PS L + P S + TV LDLDETLV + T+ P + F
Sbjct: 326 DSPPSSALQISPLHCSPKDHPIPKLTVVLDLDETLVCAYETSSLPAALRTQAIEGGLNWF 505
Query: 179 VVRPVI-----DGVPMEFYVK--KRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVD 231
+ V +G P YV +RPG+ EFL+ L+ ++V+FTA L YA ++DR+D
Sbjct: 506 ELECVSIDKEGEGKPKINYVTVFERPGLKEFLKQLSEFADMVLFTAGLEGYARPLVDRID 685
Query: 232 RNRLVSHRLYRDS-CKQEDGKLVKDLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPF 289
RLYR S E + VKDL+ +DL R+VIVD+NP SF QP N I PF
Sbjct: 686 VENRFCLRLYRPSTISTEYREHVKDLTCISKDLCRIVIVDNNPFSFVLQPVNGIPCIPF 862
>TC227720 weakly similar to UP|Q9LG22 (Q9LG22) F14J16.15, partial (52%)
Length = 1338
Score = 74.3 bits (181), Expect = 7e-14
Identities = 50/153 (32%), Positives = 74/153 (47%)
Frame = +2
Query: 143 LPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEF 202
LP L P H T+ LDL+ETL+H I + KRPGVD F
Sbjct: 401 LPDLLPQEQHVFTLVLDLNETLIH----------------YIWTRDTGWQTFKRPGVDAF 532
Query: 203 LEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGRD 262
LE LA +E+VV+T + V++R+D + +RL R + K +DGK +DLS R+
Sbjct: 533 LEHLAQFYEIVVYTDEQNMFVDPVIERLDTKHCIRYRLSRPATKYQDGKHFRDLSKLNRN 712
Query: 263 LKRVVIVDDNPNSFANQPENAILIRPFVDDVFD 295
+V+ + + QPEN + I+ + D
Sbjct: 713 PGKVLYLSGHALESCLQPENCLPIKAWQQQDID 811
>BE331073 weakly similar to GP|15289850|dbj P0003E08.14 {Oryza sativa
(japonica cultivar-group)}, partial (13%)
Length = 418
Score = 44.7 bits (104), Expect = 6e-05
Identities = 34/92 (36%), Positives = 46/92 (49%), Gaps = 3/92 (3%)
Frame = +2
Query: 144 PLLPPSISHRR---TVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVD 200
P L P S RR V LDLDETLVHS T P + DF + Y ++RP +
Sbjct: 44 PALIPKQSPRRRSMAVVLDLDETLVHS-TLEPCDDADFTFTGFFN*KEYTLYGEQRPYLH 220
Query: 201 EFLEALAAKFEVVVFTAALREYASLVLDRVDR 232
FL+ ++ EV +FT + A +LD +R
Sbjct: 221 TFLKKVSXMLEVGMFTTSQIICAEQLLDIWER 316
>TC225806
Length = 609
Score = 43.1 bits (100), Expect = 2e-04
Identities = 26/52 (50%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 239 RLYRDSC-KQEDGKLVKDLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPF 289
RLYR S E KDL+ +DL R+VIVD+NP SF QP N I PF
Sbjct: 9 RLYRPSTISTEYRXXXKDLTCISKDLCRIVIVDNNPFSFVLQPVNGIPCIPF 164
>TC234537 similar to UP|Q76DY1 (Q76DY1) AG-motif binding protein-3, partial
(13%)
Length = 562
Score = 31.2 bits (69), Expect = 0.67
Identities = 24/79 (30%), Positives = 32/79 (40%)
Frame = +1
Query: 70 WRRKTPIKNAVAASSAVLASIHRRITKFFSKLARLSPDRKRASYKILKKTSPQDDSICRT 129
WRR+ A+ A +S+ R+ KLA LSP TSP +C T
Sbjct: 112 WRRRNTSSEAILAPEEPNSSLCRKSATPTRKLASLSP-------LTTSSTSPMRMPLCPT 270
Query: 130 LVFDGGDNDPSPPLPLLPP 148
+ + SP PL PP
Sbjct: 271 V-----SSTMSPETPLTPP 312
>TC234178
Length = 427
Score = 31.2 bits (69), Expect = 0.67
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Frame = +3
Query: 118 KTSPQDDSICRTLVFDGGDNDPSPPLPLLP--------PSISHRRTVFLDLDETLVHSNT 169
K +PQ ++ + + DPS P PL P P+ + RTVF+ D+ H +
Sbjct: 105 KQTPQ*STVTMDPIILSDEEDPSTPFPLRPKKRRTEPDPNPNPNRTVFVIDDDPTPHKSA 284
Query: 170 AP 171
P
Sbjct: 285 TP 290
>TC224322
Length = 791
Score = 30.0 bits (66), Expect = 1.5
Identities = 17/74 (22%), Positives = 36/74 (47%)
Frame = +3
Query: 55 PTKSIKDIRRNNNRRWRRKTPIKNAVAASSAVLASIHRRITKFFSKLARLSPDRKRASYK 114
P+K++KD RR R ++++ + A + L IH + KF+ + ++ +Y+
Sbjct: 393 PSKAVKDKRRRCRGRRKKRSIVDILAMARHSTLEEIH-GMNKFYYAATVIEGCQQTGAYE 569
Query: 115 ILKKTSPQDDSICR 128
+ K+ + CR
Sbjct: 570 NISKSELAGEDSCR 611
>TC230374
Length = 1112
Score = 29.3 bits (64), Expect = 2.5
Identities = 37/133 (27%), Positives = 55/133 (40%), Gaps = 1/133 (0%)
Frame = +3
Query: 47 MVSRVKRVPTKSIKDIRRNNNRRWRRKTPIKNAVAASSAVLASIHRRITKFFSKLARLSP 106
++S+ K VP + + D +RN + W R + + + L + + KL +SP
Sbjct: 435 LLSKGKEVPDEPVVDDKRNRQKGWERM--VLQILFLGPSNLLEPNASFEQMSQKLI-VSP 605
Query: 107 DRKRASY-KILKKTSPQDDSICRTLVFDGGDNDPSPPLPLLPPSISHRRTVFLDLDETLV 165
K + K+ +K DSI R F P+ + S S R F LDE L
Sbjct: 606 IVKTLVFSKVPEKVREWVDSISRDWRFK--RIIPAHFAAPISASRSDFRAAFAFLDEFLG 779
Query: 166 HSNTAPPPESFDF 178
SN A P S F
Sbjct: 780 ESNAAWPSLSLLF 818
>TC235033
Length = 404
Score = 28.5 bits (62), Expect = 4.3
Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 5/160 (3%)
Frame = +3
Query: 4 TPYQDLKLPSPRHNPSQHTARNCRHEIFSSLRFLPYPNTKNQAMVSRVKRVPTKSIKDIR 63
TP+ L +N +HT + H P+ + +N M R P +S +
Sbjct: 12 TPFVSLSSSLTPYNTQKHTHTHLTH--------FPFHSQRNGPMARRSNLRPPES*LRLH 167
Query: 64 RNNNRRWRRKTPIKNAVAASSAVLASIHRRITKFFSKLARLSPDRKRASYKILKKT---S 120
R+ + + ++N + HR L R P +++A +L+ T
Sbjct: 168 RHRGHQAEHQLRLRNHHS---------HR-------LLLRPPPRQQQAPRSLLRPTLGRH 299
Query: 121 PQDDSICRTLVFDGGDNDPSPPL--PLLPPSISHRRTVFL 158
P D G P PPL PLLPPS R + L
Sbjct: 300 PPDPI--------GVPQPPHPPLRPPLLPPSRLRRHQLRL 395
>TC226762 similar to UP|GPX1_PEA (O24296) Phospholipid hydroperoxide
glutathione peroxidase, chloroplast precursor (PHGPx) ,
partial (90%)
Length = 1008
Score = 28.5 bits (62), Expect = 4.3
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Frame = +1
Query: 139 PSPPLPLLPPSISHRRTVFLDLDETLVHSNTAP----PPESFDFVVRPVIDGVPMEFYVK 194
PSPPLP + S + ++ F +L S+ P P+ F R + +F VK
Sbjct: 97 PSPPLPFIKSSFASSKSTFFHPALSLQTSSNFPRLFGKPKFFSVHARAATEKTIYDFTVK 276
Query: 195 KRPGVDEFLEALAAKFEVVVFTAA 218
D L K ++V A+
Sbjct: 277 DIDRKDVSLSKFKGKVLLIVNVAS 348
>TC205918 similar to UP|Q94F39 (Q94F39) AT3g29575/MWE13_2, partial (62%)
Length = 1479
Score = 28.5 bits (62), Expect = 4.3
Identities = 19/59 (32%), Positives = 29/59 (48%), Gaps = 7/59 (11%)
Frame = -1
Query: 118 KTSPQDDSICRTLVFDGGDNDPSPPLP----LLPPSI---SHRRTVFLDLDETLVHSNT 169
K SPQ ++ T++ GG P PP P LLP + S + +FL E + ++T
Sbjct: 768 KPSPQTRAVNDTVLAKGGATSPYPPAPCSTGLLPSDLCCCSLKAFMFLCFSERFLRAST 592
>TC229011 weakly similar to UP|Q9VTS4 (Q9VTS4) CG5684-PA (GH06247p), partial
(69%)
Length = 1165
Score = 28.1 bits (61), Expect = 5.7
Identities = 26/102 (25%), Positives = 45/102 (43%), Gaps = 1/102 (0%)
Frame = +1
Query: 10 KLPSPRHNPSQHTARNCRHEIFSSLRFLPYPNTKNQAMVSRVKRVPTKSIKDIRRNNNRR 69
+LP RH R+ F LP PN K Q ++ + ++ R+ ++ R
Sbjct: 304 QLPLHRHGHGVSGDRSPTSGEFQKQLRLPLPNPKGQRRHAQTHPIGPHLLRRARQPSHVR 483
Query: 70 WRRKTPIKNAVAASSAVLASIHRRITKFFSKLAR-LSPDRKR 110
RR+ I++ + + L I R+ + +L R L+P R R
Sbjct: 484 -RRRRRIRHVLLHLAIQLPRIQRQRGRLCQRLHRALAPKRHR 606
>TC211343 similar to UP|Q6WJ05 (Q6WJ05) Central motor kinesin 1, partial
(13%)
Length = 665
Score = 28.1 bits (61), Expect = 5.7
Identities = 18/43 (41%), Positives = 24/43 (54%)
Frame = +3
Query: 141 PPLPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPV 183
PPL LP +ISHRR+ F + + HSN P + F RP+
Sbjct: 90 PPLSDLPITISHRRSRFSAFNNSF-HSN----PRARRFGFRPI 203
>TC222071 similar to UP|Q40319 (Q40319) Pectate lyase homolog , partial (34%)
Length = 609
Score = 28.1 bits (61), Expect = 5.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Frame = -3
Query: 139 PSPPLPLLPPSISHRRTVFLDLDETLVHSNTA---------PPPESF 176
PSPP+ LP + H ++ L ++L+H A PPP SF
Sbjct: 262 PSPPVARLPNPLPHLASLNRSLAQSLLHLQQASMGLEA*HLPPPLSF 122
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,590,969
Number of Sequences: 63676
Number of extensions: 248735
Number of successful extensions: 1699
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1689
length of query: 328
length of database: 12,639,632
effective HSP length: 98
effective length of query: 230
effective length of database: 6,399,384
effective search space: 1471858320
effective search space used: 1471858320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0118a.3