BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0117b.14
(458 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BM885356 46 4e-05
BI317050 36 0.041
TC213962 36 0.041
NP595172 polyprotein [Glycine max] 35 0.054
BQ273711 32 0.46
TC229547 weakly similar to UP|Q9LJ72 (Q9LJ72) Arabidopsis thalia... 32 0.60
TC230402 homologue to UP|Q08150 (Q08150) GTP-binding protein, co... 31 1.3
TC214093 homologue to UP|Q8W536 (Q8W536) Photosystem II reaction... 31 1.3
TC214064 homologue to UP|Q8W536 (Q8W536) Photosystem II reaction... 31 1.3
TC231046 30 1.7
BU926381 weakly similar to GP|14210768|gb| T87 {Tupaia herpesvir... 30 1.7
TC205091 weakly similar to UP|Q6TXI7 (Q6TXI7) LRRGT00012, partia... 30 2.3
TC221914 similar to UP|RL4_PRUAR (Q9XF97) 60S ribosomal protein ... 30 3.0
TC216443 homologue to UP|Q08150 (Q08150) GTP-binding protein, co... 30 3.0
TC208261 similar to UP|Q818I6 (Q818I6) Phosphate transport syste... 30 3.0
TC212605 homologue to UP|Q9FSD0 (Q9FSD0) Laccase (Fragment) , p... 29 3.9
TC206106 weakly similar to UP|Q7RK82 (Q7RK82) Maebl (Fragment), ... 29 3.9
TC208063 similar to UP|Q9SJQ8 (Q9SJQ8) Expressed protein, partia... 29 5.1
TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein... 29 5.1
TC216916 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, p... 29 5.1
>BM885356
Length = 420
Score = 45.8 bits (107), Expect = 4e-05
Identities = 21/68 (30%), Positives = 34/68 (49%)
Frame = -3
Query: 3 PEFDGREAYGWLIMVEQHCEAKGVSEEEKFSGAEKALTGEAFMWWFCWRRRNQKATWWEF 62
P FDG +A GW+ + Q E + E+ + A + G+A W+ R Q ++W F
Sbjct: 235 PRFDGSDATGWIFKITQFFEYHTTPDHERLTIASFYMEGQALAWFQWMHRNGQLSSWPAF 56
Query: 63 VEALLRKF 70
+ AL +F
Sbjct: 55 LHALHSRF 32
>BI317050
Length = 425
Score = 35.8 bits (81), Expect = 0.041
Identities = 19/68 (27%), Positives = 30/68 (43%)
Frame = +3
Query: 3 PEFDGREAYGWLIMVEQHCEAKGVSEEEKFSGAEKALTGEAFMWWFCWRRRNQKATWWEF 62
P FD A + + Q + E+E+ L GEA W+ R +Q +W F
Sbjct: 21 PRFDDTNAPTLIFKISQFFDYHRTPEDERLQVTSFYLDGEALSWFQWLYRNDQLTSWSSF 200
Query: 63 VEALLRKF 70
++AL +F
Sbjct: 201LQALEMRF 224
>TC213962
Length = 799
Score = 35.8 bits (81), Expect = 0.041
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Frame = -2
Query: 3 PEFDGREAYGWLIMVEQHCEAKGVSEEEKFSGAEKALTGEAFMW--WFCWRRRNQKATWW 60
P FDG++ GW+ + Q +G+ E + G A W W W TW
Sbjct: 366 PWFDGQDPLGWIFKITQFSNYQGIPNVEHLIVGSFNMEGPALCWYRWMSW--NGFLTTWS 193
Query: 61 EFVEALLRKFEP 72
+ AL F P
Sbjct: 192 AMLHALESCFTP 157
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 35.4 bits (80), Expect = 0.054
Identities = 17/71 (23%), Positives = 29/71 (39%)
Frame = +1
Query: 2 FPEFDGREAYGWLIMVEQHCEAKGVSEEEKFSGAEKALTGEAFMWWFCWRRRNQKATWWE 61
FP FDG+ W+ EQ + + ++ A L + W+ ++ ++W
Sbjct: 304 FPRFDGKNVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDVVPWYQMLQKTEPFSSWQA 483
Query: 62 FVEALLRKFEP 72
F AL F P
Sbjct: 484 FTRALELDFGP 516
>BQ273711
Length = 409
Score = 32.3 bits (72), Expect = 0.46
Identities = 18/44 (40%), Positives = 21/44 (46%)
Frame = -2
Query: 4 EFDGREAYGWLIMVEQHCEAKGVSEEEKFSGAEKALTGEAFMWW 47
++D A WL E+ EA G EE K A L GEA WW
Sbjct: 213 DYDPEGARLWLAETEKIFEAMGCLEEHKVLYATFMLQGEAENWW 82
>TC229547 weakly similar to UP|Q9LJ72 (Q9LJ72) Arabidopsis thaliana genomic
DNA, chromosome 3, TAC clone:K13E13, partial (82%)
Length = 996
Score = 32.0 bits (71), Expect = 0.60
Identities = 29/111 (26%), Positives = 45/111 (40%)
Frame = -3
Query: 100 ERRTVVVEAKPEANSVLLAKSEIKPYSPENSEMEASRKDSEFAMAAEQTAEVSRCQPVTV 159
E++ V +A N +LLA K Y P+ ++ + D A T EVS Q V
Sbjct: 721 EKKKVQQKAS*HNNFLLLAHLLPK*YLPQLHFLQLNH*DISNAFEKGHTLEVSSTQAVHN 542
Query: 160 VDYIDCTLTAKGEKIDAEGEIKIKRLQEGSSMEKWQICSIHGRKKVQPIVL 210
C KG K ++ + + S + Q S H +++ QP L
Sbjct: 541 FHLFHCCWN*KGNKSANHLTCQLFAIFQNLSWREQQYASFHYQQENQPYFL 389
>TC230402 homologue to UP|Q08150 (Q08150) GTP-binding protein, complete
Length = 844
Score = 30.8 bits (68), Expect = 1.3
Identities = 21/74 (28%), Positives = 35/74 (46%)
Frame = +1
Query: 125 YSPENSEMEASRKDSEFAMAAEQTAEVSRCQPVTVVDYIDCTLTAKGEKIDAEGEIKIKR 184
Y E S +EA+ ++ FA Q + + V + ++ AKGEKID +
Sbjct: 538 YFMETSALEATNVENAFAEVLTQIYRIVSKKAVEGAENGTASVPAKGEKIDLK------- 696
Query: 185 LQEGSSMEKWQICS 198
+GS+++K CS
Sbjct: 697 -NDGSALKKVGCCS 735
>TC214093 homologue to UP|Q8W536 (Q8W536) Photosystem II reaction center
(Fragment), partial (83%)
Length = 675
Score = 30.8 bits (68), Expect = 1.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 433 YLFFVCLKKLVFYPTL 448
YLFF C+KKL YPTL
Sbjct: 601 YLFFCCIKKLFVYPTL 648
>TC214064 homologue to UP|Q8W536 (Q8W536) Photosystem II reaction center
(Fragment), partial (83%)
Length = 670
Score = 30.8 bits (68), Expect = 1.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +3
Query: 433 YLFFVCLKKLVFYPTL 448
YLFF C+KKL YPTL
Sbjct: 567 YLFFCCIKKLFVYPTL 614
>TC231046
Length = 959
Score = 30.4 bits (67), Expect = 1.7
Identities = 26/93 (27%), Positives = 40/93 (42%), Gaps = 4/93 (4%)
Frame = +1
Query: 61 EFVEALLRKFEP--ELEPYM--PEPVQDSEEEEIPGKQEVLEAERRTVVVEAKPEANSVL 116
EFVEA+ E +EP EP++ SEE + G+ E +E +T++VE+
Sbjct: 304 EFVEAMEAPSEETQSIEPIKLKEEPIEPSEEGKPSGESEKNASETKTLIVES-------- 459
Query: 117 LAKSEIKPYSPENSEMEASRKDSEFAMAAEQTA 149
SE+ P E E F ++ A
Sbjct: 460 -INSEVAPVPEERVIEEIPTAAKSFEKVTKEAA 555
>BU926381 weakly similar to GP|14210768|gb| T87 {Tupaia herpesvirus}, partial
(3%)
Length = 450
Score = 30.4 bits (67), Expect = 1.7
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +2
Query: 64 EALLRKFEPE-LEPYMPEPVQDSE---EEEIPGKQEVLEAERRTVVVEAKPEANSVLLAK 119
E + K E E L+ PE ++++ E + P E + ++ EAK EAN+ A+
Sbjct: 194 EPTVEKTEEETLKQEAPEETKENDDPTEVKTPEAAEAVTETQKETEAEAKEEANTEAPAE 373
Query: 120 SEIKPYSPENSEMEASRKDSEFAMAAEQTA 149
S E E A +KD E AE A
Sbjct: 374 K-----SEEEKEGPAEKKDEEVIAEAEAEA 448
>TC205091 weakly similar to UP|Q6TXI7 (Q6TXI7) LRRGT00012, partial (5%)
Length = 1360
Score = 30.0 bits (66), Expect = 2.3
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +1
Query: 3 PEFDGR---EAY-GWLIMVEQHCEAKGVSEEEKFSGAEKALTGEAFMWW 47
P F G+ EAY W + VEQ +SEE K A + G A WW
Sbjct: 1141 PYFHGKDNVEAYLDWEMKVEQLFACHHISEERKVPLATLSFQGYALYWW 1287
>TC221914 similar to UP|RL4_PRUAR (Q9XF97) 60S ribosomal protein L4 (L1),
partial (33%)
Length = 448
Score = 29.6 bits (65), Expect = 3.0
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +3
Query: 270 TKPPDRSGGSSHFILGDSCRSDLVANRPPAKPPDLAET-AVVGYCGLELVRAEESKGRSL 328
TKPP S G+ S S V PA+ P +ET AV C L RS
Sbjct: 219 TKPPP-SPGAPAAPSRVSRESPAVVPTAPARAP--SETCAVAAACLLPPRSGAAGTARST 389
Query: 329 IRKSVTVSRPPAKPP 343
+S T S PP+ PP
Sbjct: 390 FNRSATPSSPPSPPP 434
>TC216443 homologue to UP|Q08150 (Q08150) GTP-binding protein, complete
Length = 1277
Score = 29.6 bits (65), Expect = 3.0
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 125 YSPENSEMEASRKDSEFAMAAEQTAEVSRCQPVTVVDYIDCTLTAKGEKIDAEGEIK-IK 183
Y E S +EA+ ++ FA Q + + V + ++ AKGEKID + ++ +K
Sbjct: 810 YFMETSALEATNVENAFAEVLTQIYRIVSKKAVEGAENGTASVPAKGEKIDLKNDVSALK 989
Query: 184 RL 185
R+
Sbjct: 990 RV 995
>TC208261 similar to UP|Q818I6 (Q818I6) Phosphate transport system permease
protein pstA, partial (5%)
Length = 721
Score = 29.6 bits (65), Expect = 3.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 49 CWRRRNQKATWWEFVEALLRKFEPELEPYM 78
CWR RNQ W E +R+ E E P++
Sbjct: 164 CWRVRNQSLECWVMRETRIREREREQSPWL 75
>TC212605 homologue to UP|Q9FSD0 (Q9FSD0) Laccase (Fragment) , partial (11%)
Length = 709
Score = 29.3 bits (64), Expect = 3.9
Identities = 14/39 (35%), Positives = 19/39 (47%)
Frame = -2
Query: 406 PKRNFSFSIIYRPVHSLTLMGQAQLLEYLFFVCLKKLVF 444
P + SF I Y+ + L LM Y+FF CL +F
Sbjct: 489 PISSLSFFICYKKILLLALMVHTPFGNYIFFTCLPLFLF 373
>TC206106 weakly similar to UP|Q7RK82 (Q7RK82) Maebl (Fragment), partial (7%)
Length = 1040
Score = 29.3 bits (64), Expect = 3.9
Identities = 25/81 (30%), Positives = 40/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 69 KFEPELEPYMPEPVQDSEEEEIPGKQ--EVLEAERRTVVVEAKPEANSVLLAKSEIKPYS 126
K EPE + + ++ EEE K+ EV E ++ V E K EA V K E++ +
Sbjct: 650 KPEPEKKKTELKALEKKEEEVSEEKKEVEVTEEKKEAEVTEEKKEA-EVTEEKKEVE-VA 823
Query: 127 PENSEMEASRKDSEFAMAAEQ 147
E E+E + + E +A E+
Sbjct: 824 EEKKEVEGTEEKKEVEVAEEK 886
>TC208063 similar to UP|Q9SJQ8 (Q9SJQ8) Expressed protein, partial (20%)
Length = 1403
Score = 28.9 bits (63), Expect = 5.1
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Frame = +2
Query: 379 LAQLDFSELGQSLTTRPKPIMLNRRNGPKRNFSFSIIYRPVHSLTLMGQAQLLE------ 432
L+ LD E SL +R + K FS + I H + + A+++E
Sbjct: 641 LSNLDAKEANFSLVSRSETFSGTAVYATKAKFSETGIS---HEILIKCGAEVVEGGEAKK 811
Query: 433 -YLFFVCLKKLVFYPTLRTRWMFRG 456
++ VC+ K + R RW FRG
Sbjct: 812 GHVLSVCVDKKTIFQVKRLRWNFRG 886
>TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein-1, partial
(77%)
Length = 883
Score = 28.9 bits (63), Expect = 5.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 46 WWFCWRRRNQKATWW 60
WW WRRR ++ WW
Sbjct: 518 WWQIWRRRWREVRWW 562
>TC216916 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, partial (50%)
Length = 1604
Score = 28.9 bits (63), Expect = 5.1
Identities = 27/88 (30%), Positives = 33/88 (36%)
Frame = +2
Query: 272 PPDRSGGSSHFILGDSCRSDLVANRPPAKPPDLAETAVVGYCGLELVRAEESKGRSLIRK 331
PP R+GG +HF D +R PA PP +A A ES+ R
Sbjct: 596 PPPRTGGDTHF------SGDAPCSRVPAPPPPSPSSAG--------PVAPESELRLPAAD 733
Query: 332 SVTVSRPPAKPPDFAVMAGDARFRRRWL 359
+ RPP P RRRWL
Sbjct: 734 LLLPLRPPHAP---------RPLRRRWL 790
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,590,626
Number of Sequences: 63676
Number of extensions: 357262
Number of successful extensions: 2379
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 2301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2370
length of query: 458
length of database: 12,639,632
effective HSP length: 100
effective length of query: 358
effective length of database: 6,272,032
effective search space: 2245387456
effective search space used: 2245387456
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0117b.14