TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0115.1
         (204 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC227056 similar to UP|Q8VZF7 (Q8VZF7) AT4g32050/F10N7_130, part...    29  1.7
TC228568                                                               28  3.7
AW307549                                                               27  4.9
TC217432 similar to UP|O52943 (O52943) Plasmid PLS32 DNA for thy...    27  6.4

>TC227056 similar to UP|Q8VZF7 (Q8VZF7) AT4g32050/F10N7_130, partial (41%)
          Length = 1863

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 17/71 (23%), Positives = 32/71 (44%)
 Frame = +3

Query: 12  DVQISQISSNLLQISQKMDPSECPFDLAAYIQNSQIEEAYVLNRFRERRRKIREDTAPRS 71
           D  I Q+S+N       +DP+     L   ++ S++E A +LN     + +  +DT+  +
Sbjct: 324 DWLIGQVSTN-----DALDPAPADMCLLLVLEQSRVEIAVLLNELAYLKYEAPQDTSATA 488

Query: 72  RKYLGRDHTAA 82
                + H  A
Sbjct: 489 EAIFSKRHNVA 521


>TC228568 
          Length = 980

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 26  SQKMDPSECPFDLAAYIQNSQIEEAYVLNRF-RERRRKIREDTAPRS 71
           SQK  P     DLA + ++  +EE YV  RF R +++K+ +  A  S
Sbjct: 84  SQKFLPGVSFLDLAIFQKHLVVEELYVQERF*RPKKKKLLKKHAQSS 224


>AW307549 
          Length = 425

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 4   LIWTHISIDVQISQISSNLLQISQKMDPSECP 35
           L+WT + ID +I  ++SNL  ++  + P++ P
Sbjct: 140 LLWTVVIIDHRIGTLASNLSSVT*WIKPNQLP 45


>TC217432 similar to UP|O52943 (O52943) Plasmid PLS32 DNA for thymidine
           kinase, replication protein, complete cds, partial (14%)
          Length = 1041

 Score = 26.9 bits (58), Expect = 6.4
 Identities = 12/36 (33%), Positives = 18/36 (49%)
 Frame = +3

Query: 90  YFANEPTYDDAMFRRRYRMQKHLFLRIVDDLSSSDN 125
           YFA EP +D   +   Y   KH    ++ D + SD+
Sbjct: 120 YFAIEPLFDRERYIVTYNPSKHKVYAVLKDQAKSDD 227


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.324    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,791,751
Number of Sequences: 63676
Number of extensions: 84896
Number of successful extensions: 494
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of query: 204
length of database: 12,639,632
effective HSP length: 93
effective length of query: 111
effective length of database: 6,717,764
effective search space: 745671804
effective search space used: 745671804
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)