BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0114.8
(743 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC228639 similar to UP|Q8VZD4 (Q8VZD4) At1g28320/F3H9_2, partial... 401 e-112
TC228637 similar to UP|Q8VZD4 (Q8VZD4) At1g28320/F3H9_2, partial... 258 7e-69
TC228638 similar to UP|Q8VZD4 (Q8VZD4) At1g28320/F3H9_2, partial... 216 4e-56
BE021732 192 5e-49
TC221033 similar to UP|Q8VZD4 (Q8VZD4) At1g28320/F3H9_2, partial... 155 6e-38
BI497995 similar to GP|18086453|gb| At1g28320/F3H9_2 {Arabidopsi... 127 2e-29
TC205956 homologue to UP|Q94BX6 (Q94BX6) K16N12.18/K16N12.18 (At... 53 6e-07
BG238653 31 1.7
TC213734 31 2.3
TC232057 similar to UP|Q8L5C7 (Q8L5C7) UDP-glucuronosyltransfera... 30 3.0
TC226332 similar to PIR|H96696|H96696 protein F1N21.16 [imported... 30 5.1
TC223790 weakly similar to UP|Q7TSY0 (Q7TSY0) Ischemia/reperfusi... 30 5.1
TC227281 weakly similar to UP|PWP1_HUMAN (Q13610) Periodic trypt... 30 5.1
TC224859 weakly similar to UP|Q7TP79 (Q7TP79) Aa2-245, partial (3%) 30 5.1
TC225001 UP|Q95I98 (Q95I98) Major histocompatibility class I rec... 29 6.6
TC221260 29 6.6
>TC228639 similar to UP|Q8VZD4 (Q8VZD4) At1g28320/F3H9_2, partial (21%)
Length = 746
Score = 401 bits (1030), Expect = e-112
Identities = 187/242 (77%), Positives = 218/242 (89%)
Frame = +3
Query: 432 TNSKTLPFMLEGTTSLGNKIESDQISQTLHSKVPVHYPFAADEHGGYKLNPSYDNHRNIR 491
TNS+ + MLEGT L N++ES+Q+SQT K+P+ YPFAA+E GGYK +P+YDNHRNIR
Sbjct: 21 TNSERISSMLEGTAYLVNRVESNQVSQTSPLKMPILYPFAANEQGGYKSSPTYDNHRNIR 200
Query: 492 IRLDHIKPWVWCDAKVVYICKGPWDVALLQIESIPDNLVPMVMNFSRPSTGSKAYVIGHG 551
+RLDHIKPWVWC AKVVY+CKGPWDVALLQ+ES+PDNL+P+ MNFSRPSTGS+A+VIGHG
Sbjct: 201 VRLDHIKPWVWCYAKVVYVCKGPWDVALLQLESVPDNLLPITMNFSRPSTGSQAFVIGHG 380
Query: 552 LFGPKCGFFPSVCSGVIAKVVEAKTTQSYQSIQAEHMHTNGNFPAMLETTAAVHPGASGG 611
LFGPK GFFPSVCSGV+AKVVEAKT QSY S+Q EH+H + +FPAMLETTAA+HPGASGG
Sbjct: 381 LFGPKHGFFPSVCSGVVAKVVEAKTPQSYLSVQPEHLHNHEHFPAMLETTAAIHPGASGG 560
Query: 612 AVINSDGHMIGLVTSNARHSGGAVIPHLNFSIPSAALAPIFKFAEDMKDLSLLQILDEPN 671
A+INSDGHMIGLVTSNARHSGGA+IP LNFSIPSAALAPI F++ M+DLSLL+ILDEPN
Sbjct: 561 AIINSDGHMIGLVTSNARHSGGAIIPQLNFSIPSAALAPIVNFSKAMEDLSLLRILDEPN 740
Query: 672 EY 673
EY
Sbjct: 741 EY 746
>TC228637 similar to UP|Q8VZD4 (Q8VZD4) At1g28320/F3H9_2, partial (15%)
Length = 867
Score = 258 bits (659), Expect = 7e-69
Identities = 131/175 (74%), Positives = 147/175 (83%)
Frame = +2
Query: 548 IGHGLFGPKCGFFPSVCSGVIAKVVEAKTTQSYQSIQAEHMHTNGNFPAMLETTAAVHPG 607
+G LF GFFPSVCSGV+AKVVEAKT QSY SIQ EH+H + +FPAMLETTA +HPG
Sbjct: 125 LGSHLFS--LGFFPSVCSGVVAKVVEAKTPQSYLSIQPEHLHNHEHFPAMLETTATIHPG 298
Query: 608 ASGGAVINSDGHMIGLVTSNARHSGGAVIPHLNFSIPSAALAPIFKFAEDMKDLSLLQIL 667
ASGGAVINSDGHMIGLVTSNARHSGGAVIPHLNFSIPSAALAP+FKF++ M+DLSLL+IL
Sbjct: 299 ASGGAVINSDGHMIGLVTSNARHSGGAVIPHLNFSIPSAALAPVFKFSKAMQDLSLLRIL 478
Query: 668 DEPNEYLSSIWALMRPSYPKLHSVPGSPQSLVDKKSKEEKGSRFAKFIAERKDIF 722
DEPNEYLSS+WALMRPSYP H + PQS+ D K+K EKGSRFAK +K F
Sbjct: 479 DEPNEYLSSVWALMRPSYPNPHPMHDPPQSVTDNKNK-EKGSRFAKVYC*KKGHF 640
Score = 45.4 bits (106), Expect = 9e-05
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = +3
Query: 713 KFIAERKDIFNDSSHIGKSGVVPKEVIPSKL 743
KFIAERKDIFN GKSGV+ KEVIPSKL
Sbjct: 612 KFIAERKDIFNS----GKSGVISKEVIPSKL 692
>TC228638 similar to UP|Q8VZD4 (Q8VZD4) At1g28320/F3H9_2, partial (9%)
Length = 696
Score = 216 bits (549), Expect = 4e-56
Identities = 112/149 (75%), Positives = 123/149 (82%)
Frame = +1
Query: 595 PAMLETTAAVHPGASGGAVINSDGHMIGLVTSNARHSGGAVIPHLNFSIPSAALAPIFKF 654
P+ TAA+HPGASGGA NSDGHMIGLVTSNARHSGGA+IP LNFSIPSAALAPI F
Sbjct: 10 PSNAXXTAAIHPGASGGAXXNSDGHMIGLVTSNARHSGGAIIPQLNFSIPSAALAPIVNF 189
Query: 655 AEDMKDLSLLQILDEPNEYLSSIWALMRPSYPKLHSVPGSPQSLVDKKSKEEKGSRFAKF 714
++ M+DLSLL+ILDEPNEYLSS+WALMRPSYP H + PQS+ D KSK EKGSRFAKF
Sbjct: 190 SKAMEDLSLLRILDEPNEYLSSVWALMRPSYPNPHPMHDPPQSVTDNKSK-EKGSRFAKF 366
Query: 715 IAERKDIFNDSSHIGKSGVVPKEVIPSKL 743
IAERKDIFN GKSGV+ KEVI SKL
Sbjct: 367 IAERKDIFN----AGKSGVISKEVIASKL 441
>BE021732
Length = 415
Score = 192 bits (488), Expect = 5e-49
Identities = 101/133 (75%), Positives = 112/133 (83%)
Frame = +1
Query: 81 TLCDPQVARRLYGDNSEGRVMVVTVASVVEPFLSPQQRDNIPQFQGRPDLISGVRIDIMT 140
TLCD QVA RL GDN E RV+VVTVASVVEPFLSPQQRDNIPQ GRPDLI+GV+ID+MT
Sbjct: 10 TLCDSQVATRLNGDNCEDRVLVVTVASVVEPFLSPQQRDNIPQ--GRPDLIAGVQIDVMT 183
Query: 141 EETNEKSDHGLTPGWHGAQLLSLFDIPASALGVQSLIEASLGFSEHEWEIGWSLASSSND 200
EETNEKS+ G TP W AQLLSL DIPAS+ +QSLIEASLG EHEWE+GWSLAS +ND
Sbjct: 184 EETNEKSNRG-TPCWLLAQLLSLVDIPASSNCLQSLIEASLGLPEHEWEVGWSLASYNND 360
Query: 201 SKPSRDFLQTQGR 213
S+PS+DF QT R
Sbjct: 361 SQPSKDFFQTHPR 399
>TC221033 similar to UP|Q8VZD4 (Q8VZD4) At1g28320/F3H9_2, partial (4%)
Length = 435
Score = 155 bits (392), Expect = 6e-38
Identities = 84/105 (80%), Positives = 89/105 (84%)
Frame = +3
Query: 66 SGETTLSASGMLVPHTLCDPQVARRLYGDNSEGRVMVVTVASVVEPFLSPQQRDNIPQFQ 125
SG TTLSASGMLVP TLCD QVA LYGDN E RV+VVTVASVVEPFLSPQQRDNIP Q
Sbjct: 123 SGGTTLSASGMLVPDTLCDAQVAGCLYGDNCEDRVLVVTVASVVEPFLSPQQRDNIP--Q 296
Query: 126 GRPDLISGVRIDIMTEETNEKSDHGLTPGWHGAQLLSLFDIPASA 170
GRPDLISGVRID+MTEE NEKS+ G TP W A+LLSL DIPAS+
Sbjct: 297 GRPDLISGVRIDVMTEEANEKSNQG-TPCWLAAELLSLVDIPASS 428
Score = 38.5 bits (88), Expect = 0.011
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = +2
Query: 1 MAHPETVNFARNFAVMVRVRGP 22
M ETVNFARNFA MVRVRGP
Sbjct: 56 MIPSETVNFARNFAAMVRVRGP 121
>BI497995 similar to GP|18086453|gb| At1g28320/F3H9_2 {Arabidopsis thaliana},
partial (4%)
Length = 423
Score = 127 bits (318), Expect = 2e-29
Identities = 83/146 (56%), Positives = 87/146 (58%), Gaps = 12/146 (8%)
Frame = +2
Query: 1 MAHPETVNFARNFAVMVRVRGPCCVIMG-----------QLTLQF-FSGPERDEDEKTRF 48
M ETVNFARNFA MVRVRGP L+LQ F P+ + K F
Sbjct: 29 MIPSETVNFARNFAAMVRVRGPVSFSFSLLQRRLLYYHRSLSLQLTFRDPKGLKMRKHAF 208
Query: 49 SSISVRIPICNLIQLVSSGETTLSASGMLVPHTLCDPQVARRLYGDNSEGRVMVVTVASV 108
SG TTLSASGMLVP TLCD QVA LYGDN E RV+VVTVAS
Sbjct: 209 HQ-------------YCSGGTTLSASGMLVPDTLCDAQVAGCLYGDNCEDRVLVVTVASX 349
Query: 109 VEPFLSPQQRDNIPQFQGRPDLISGV 134
VEPFLSPQQRDNIP QGRPDLISGV
Sbjct: 350 VEPFLSPQQRDNIP--QGRPDLISGV 421
>TC205956 homologue to UP|Q94BX6 (Q94BX6) K16N12.18/K16N12.18
(At3g27925/K16N12.18), partial (77%)
Length = 1489
Score = 52.8 bits (125), Expect = 6e-07
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
Frame = +1
Query: 516 DVALLQIESIPDNLVPMVMNFSRPS-TGSKAYVIGHGLFGPKCGFFPSVCSGVIAKVVEA 574
DVA+L++++ D L P+ + S G K Y IG+ FG V SG+ ++ A
Sbjct: 535 DVAVLRVDAPKDKLRPIPIGVSADLLVGQKVYAIGNP-FGLDHTLTTGVISGLRREISSA 711
Query: 575 KTTQSYQSIQAEHMHTNGNFPAMLETTAAVHPGASGGAVINSDGHMIGLVTSNARHSGGA 634
T + Q + ++T AA++PG SGG +++S G++IG+ T+ SG +
Sbjct: 712 ATGRPIQDV--------------IQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGAS 849
Query: 635 VIPHLNFSIP 644
+ FSIP
Sbjct: 850 --SGVGFSIP 873
>BG238653
Length = 465
Score = 31.2 bits (69), Expect = 1.7
Identities = 18/41 (43%), Positives = 19/41 (45%)
Frame = -2
Query: 117 QRDNIPQFQGRPDLISGVRIDIMTEETNEKSDHGLTPGWHG 157
+R I GR L GVR MT E KSD GL HG
Sbjct: 140 ERLRIGDLVGRTGLCLGVRFSPMTSERKRKSDKGLRSCVHG 18
>TC213734
Length = 540
Score = 30.8 bits (68), Expect = 2.3
Identities = 23/65 (35%), Positives = 32/65 (48%)
Frame = +2
Query: 153 PGWHGAQLLSLFDIPASALGVQSLIEASLGFSEHEWEIGWSLASSSNDSKPSRDFLQTQG 212
P HG+ L SLFD ++ L SE +W S +S+S+ SKP F+QT
Sbjct: 77 PRCHGSALSSLFDFQSAKL------------SEPQWP--RSSSSTSSSSKP*FSFVQTAA 214
Query: 213 RLAVG 217
R + G
Sbjct: 215 RSSNG 229
>TC232057 similar to UP|Q8L5C7 (Q8L5C7) UDP-glucuronosyltransferase , partial
(34%)
Length = 1228
Score = 30.4 bits (67), Expect = 3.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 127 RPDLISGVRIDIMTEETNEKSDHGLT 152
RPDL+ G + + +E NE SD GLT
Sbjct: 742 RPDLVIGGSVILSSESVNETSDRGLT 819
>TC226332 similar to PIR|H96696|H96696 protein F1N21.16 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(72%)
Length = 1586
Score = 29.6 bits (65), Expect = 5.1
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = -1
Query: 580 YQSIQAEHMHTNGNFPAMLETTAAVHPGASGGAVINSDGHMIGLVTSNARHSGGAVIPH 638
Y + + T G P +L PGA GGA G + + S G V+PH
Sbjct: 992 YVASEIAEKRTPGPLPELLRLKIPTQPGARGGAGRQHGGELARVCLHEEPPSLGDVLPH 816
>TC223790 weakly similar to UP|Q7TSY0 (Q7TSY0) Ischemia/reperfusion inducible
protein, partial (14%)
Length = 422
Score = 29.6 bits (65), Expect = 5.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 48 FSSISVRIPICNLIQLVSSGETTLSA 73
F SI VR+P CN I++++ G T A
Sbjct: 90 FDSIGVRVPDCNFIRIIARGSGTALA 167
>TC227281 weakly similar to UP|PWP1_HUMAN (Q13610) Periodic tryptophan
protein 1 homolog (Keratinocyte protein IEF SSP 9502),
partial (7%)
Length = 1600
Score = 29.6 bits (65), Expect = 5.1
Identities = 30/110 (27%), Positives = 48/110 (43%)
Frame = -2
Query: 267 GVLSPTHFFNSYPPNSSDGSLLMADIRTLPGMEGSPVFSEHACLTGVLIRPLRQKTSGVE 326
G P FF+S PP ++ G R+ MEGS E + L PLR ++S
Sbjct: 738 GFFFPFFFFSSNPPKTTHGCTSSITSRSQISMEGS---IEPTAMKFPLSPPLRGQSS--- 577
Query: 327 TQLVIPWEAIVTASSGLLRKWGKGPFVGTYKLDVPASNTHEQLNLGSSSL 376
+A+ + ++G++ W F+ L+ +S T L SSS+
Sbjct: 576 -------QAVQSGNAGIMILW*GYMFI---SLESASSITQTSR*LTSSSV 457
>TC224859 weakly similar to UP|Q7TP79 (Q7TP79) Aa2-245, partial (3%)
Length = 843
Score = 29.6 bits (65), Expect = 5.1
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = -1
Query: 213 RLAVGGSGSA-SLLC-KSLTRMAILSVSLSLKDSLDSSVCSMIKRGDFLLAIGSPFGVLS 270
R VG S SLLC K + + +LS SLSL+ S SS S + S F S
Sbjct: 834 R*GVGNKNSNFSLLCVKKMATLTLLS-SLSLRSSSSSSSSS--------FTLSSSFSSPS 682
Query: 271 PTHFFNSYPPNSSDGSLLMADIR 293
FF S+P S+ SL + I+
Sbjct: 681 SFAFFCSFPLRSATSSLKVQTIQ 613
>TC225001 UP|Q95I98 (Q95I98) Major histocompatibility class I receptor,
partial (8%)
Length = 548
Score = 29.3 bits (64), Expect = 6.6
Identities = 22/52 (42%), Positives = 28/52 (53%)
Frame = -1
Query: 215 AVGGSGSASLLCKSLTRMAILSVSLSLKDSLDSSVCSMIKRGDFLLAIGSPF 266
A GS SL SL+ LS+SLSL SL S C + + FLL++ PF
Sbjct: 209 AQAARGSLSL---SLSLSLSLSLSLSLSLSLSLSSCRIRHQVHFLLSLKFPF 63
>TC221260
Length = 447
Score = 29.3 bits (64), Expect = 6.6
Identities = 14/37 (37%), Positives = 19/37 (50%)
Frame = -3
Query: 17 VRVRGPCCVIMGQLTLQFFSGPERDEDEKTRFSSISV 53
+RV+G CC +GQ G E RFSS+S+
Sbjct: 163 IRVQGKCCFKLGQSIFNPSLGEELKAQIDARFSSLSI 53
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,960,186
Number of Sequences: 63676
Number of extensions: 503192
Number of successful extensions: 2437
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 2416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2428
length of query: 743
length of database: 12,639,632
effective HSP length: 104
effective length of query: 639
effective length of database: 6,017,328
effective search space: 3845072592
effective search space used: 3845072592
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0114.8