BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0114.7
(1898 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 181 2e-45
CD417230 weakly similar to GP|2244915|emb| reverse transcriptase... 112 5e-37
CO982349 124 5e-28
BI785148 homologue to GP|25166165|dbj murF {Wigglesworthia brevi... 101 3e-21
TC212765 76 3e-21
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 81 5e-15
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A... 77 9e-14
TC213164 76 2e-13
AW757033 75 4e-13
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret... 72 3e-12
TC231841 69 1e-11
BI972659 69 2e-11
TC213061 66 1e-10
CO979823 65 3e-10
CF922212 63 1e-09
TC233392 63 1e-09
TC211809 63 1e-09
BI315739 62 3e-09
TC223668 61 4e-09
AI496436 61 5e-09
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase (Fragment)
, partial (59%)
Length = 1077
Score = 181 bits (460), Expect = 2e-45
Identities = 109/331 (32%), Positives = 170/331 (50%), Gaps = 4/331 (1%)
Frame = +1
Query: 1137 MDNAFLAQEVIHHMSKSTAKRGMVAFKIDLEKAYDSVSWSFLQETLELYGFPEVTINLIM 1196
+ +A +A EVI +S + + FK+D EKAYDSVSW+FL + F I I
Sbjct: 1 LHSALIANEVIDEAKRSN--KSCLVFKVDYEKAYDSVSWNFLMYMMWRMDFSPKWIKWIE 174
Query: 1197 SSVTSSQVSILWNGCRLPAFKPGRGLRQGDPMSPYLFVLCMERLSVLIQSLVDKGDWKPI 1256
V S+ +S+L NG F P RGLRQGDP++P+LF + E L+ L++ V++ +KP
Sbjct: 175 ECVKSASISVLVNGSPTAEFLPQRGLRQGDPLTPFLFNIVAEGLNGLMRRAVEENLYKPY 354
Query: 1257 RLSKNGPPISHLFFADDVLLFCEASVAQVNLLASTMQLFCDSSGLKINLSKS----KAIV 1312
+ NG PIS L +ADD + F EA+ V + ++ F S L+IN +KS +
Sbjct: 355 LVGANGVPISILQYADDTIFFGEAAKENVEAIKVILRSFELVSNLRINFAKSCFGVFGVT 534
Query: 1313 SKGVSEVVKDSISVVAPIPFVHDLGKYLGFPLKGGRIHRNRFNFLLESIQRKLGSWRANM 1372
+ E + PF+ YLG P+ + ++ ++ +RKL W+
Sbjct: 535 DQWKQEAANYLHCSLLAFPFI-----YLGIPIGANSRRCHMWDSIIRKCERKLSKWK*RH 699
Query: 1373 LSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSFIWSGKGGGHGWHLVNWEK 1432
+S GRV L KSV+ ++P Y F +P+ V K+ ++ R+F+W G + WEK
Sbjct: 700 ISFGGRVTLIKSVLTSIPIYFFSFFRVPQSVVDKLVKI*RTFLWGGGPDQKKISWIRWEK 879
Query: 1433 ITQPKDRGGLGVRDTELANTALMGKAIWCLM 1463
+ PK+RGG+ R N +I+C +
Sbjct: 880 LCLPKERGGI*KRLPNNHNAVANHNSIFCFI 972
>CD417230 weakly similar to GP|2244915|emb| reverse transcriptase like protein
{Arabidopsis thaliana}, partial (7%)
Length = 688
Score = 112 bits (280), Expect(2) = 5e-37
Identities = 54/121 (44%), Positives = 88/121 (72%)
Frame = -3
Query: 1192 INLIMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDPMSPYLFVLCMERLSVLIQSLVDKG 1251
+ L+ ++++ +S+LWNG L F P G+RQ DP++PYLFVLC+ERLS LI +++K
Sbjct: 686 VQLVWYCMSTTTMSLLWNGEVLDHFSPNIGVRQRDPIAPYLFVLCLERLSHLINLVMNKK 507
Query: 1252 DWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNLLASTMQLFCDSSGLKINLSKSKAI 1311
+ I++++ G ISHL F DD++LF EA++ QV+++ T++LF DSSG K+N+ K+K+
Sbjct: 506 L*RSIQVNRGGLLISHLAFVDDLILFVEANMDQVDVINLTLELFSDSSGAKVNVDKTKSF 327
Query: 1312 V 1312
+
Sbjct: 326 L 324
Score = 62.8 bits (151), Expect(2) = 5e-37
Identities = 30/87 (34%), Positives = 53/87 (60%)
Frame = -2
Query: 1313 SKGVSEVVKDSISVVAPIPFVHDLGKYLGFPLKGGRIHRNRFNFLLESIQRKLGSWRANM 1372
SK V+ V++ IS + DLGKYLG P+ + F+F+++ + ++ W++N+
Sbjct: 321 SKNVNWWVEEDISSGLGLQSTDDLGKYLGVPIFHKNPTSHTFDFIIDKVNKRFSRWKSNL 142
Query: 1373 LSLAGRVCLAKSVIAAMPTYTMQVFNM 1399
LS+ GR+ L K V+ A+P++ MQ N+
Sbjct: 141 LSMVGRLTLTK*VV*ALPSHIMQFDNL 61
>CO982349
Length = 795
Score = 124 bits (310), Expect = 5e-28
Identities = 80/249 (32%), Positives = 127/249 (50%), Gaps = 7/249 (2%)
Frame = +3
Query: 1195 IMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDPMSPYLFVLCMERLSVLIQSLVDKGDWK 1254
I + S+ VSIL N + F P RGLRQGDP++P LF + E L+ L++ VD+ +
Sbjct: 72 IRGCLHSASVSILVNESPINEFSPQRGLRQGDPLAPLLFNIVAEGLTGLMREAVDRKRFN 251
Query: 1255 PIRLSKNGPPISHLFFADDVLLFCEASVAQVNLLASTMQLFCDSSGLKINLSKSK--AIV 1312
+ KN P+S L +ADD + F EA++ + ++ + ++ F +SGLKIN ++S+ AI
Sbjct: 252 SFLVGKNKEPVSILQYADDTIFFEEATMENMKVIKTILRCFELASGLKINFAESRFGAIW 431
Query: 1313 S-----KGVSEVVKDSISVVAPIPFVHDLGKYLGFPLKGGRIHRNRFNFLLESIQRKLGS 1367
K +E + S + +PF YLG P++ R + ++ + KL
Sbjct: 432 KPDHWCKEAAEFLNCS---MLSMPF-----SYLGIPIEANPRCREI*DPIIRKCETKLAR 587
Query: 1368 WRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSFIWSGKGGGHGWHL 1427
W+ +SL GRV L +++ A+P Y F P V K+ + R F+W G
Sbjct: 588 WKQRHISLGGRVTLINAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLWGGGSXQRRIAW 767
Query: 1428 VNWEKITQP 1436
V WE + P
Sbjct: 768 VKWETVCLP 794
>BI785148 homologue to GP|25166165|dbj murF {Wigglesworthia brevipalpis},
partial (2%)
Length = 422
Score = 101 bits (252), Expect = 3e-21
Identities = 55/145 (37%), Positives = 77/145 (52%)
Frame = -2
Query: 1630 VPEKIRTFVWLTLQNSLQVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELWLK 1689
+P+KIR WL L NSL N RF + S + CS P ED LHCLR PH++E+WL
Sbjct: 421 IPKKIRIMFWLILHNSLSKNSTRFHRNLVNSSAFPHCSNPREDSLHCLRDFPHAKEIWLG 242
Query: 1690 FGAFAWPNFTAGDHSSWIRSQARSNNGVKFIVGLWGVWKWRNNMIFEDSPWSLEEAWRRV 1749
FG FA + S ++SQ + F +W V KW NN IF+D W ++ + +
Sbjct: 241 FG-FAPHLSSLPLM*SGLKSQLNGSKVFLFTTIVWWV*KWGNNCIFDDEKWDIQRVVQSI 65
Query: 1750 CHEHDEIVAVLGEEAGSMDCWLGSR 1774
C HD++V+ + DC L S+
Sbjct: 64 CFYHDDLVST------NSDCALASQ 8
>TC212765
Length = 637
Score = 75.9 bits (185), Expect(2) = 3e-21
Identities = 46/119 (38%), Positives = 63/119 (52%)
Frame = +3
Query: 1230 PYLFVLCMERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNLLA 1289
PYLFVLCMERL++ I L + W+PI +S + + +L DD+ LF A L +
Sbjct: 15 PYLFVLCMERLALCIHDLTSQ*IWRPILVSDDNRLVPYLMLVDDIFLFINAIGD*AYLAS 194
Query: 1290 STMQLFCDSSGLKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFPLKGGR 1348
T+ F + GLK+NL KS S ++ V++D IS I LGKYL GR
Sbjct: 195 LTL*NFFQTFGLKLNLDKSSMYCS*RMAPVLRDLISNTLNIVHAPSLGKYLCLKFIHGR 371
Score = 46.2 bits (108), Expect(2) = 3e-21
Identities = 22/72 (30%), Positives = 37/72 (50%)
Frame = +2
Query: 1365 LGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSFIWSGKGGGHG 1424
L SW+ +L+ A + CL V+ A P Y M+ +P+ + I++ R IW+ G
Sbjct: 416 LASWKGKLLNQASKHCLT*LVLHAFPIYPMEASWLPQSIFQAIDKASRVTIWNKVGASLS 595
Query: 1425 WHLVNWEKITQP 1436
WH V+ ++P
Sbjct: 596 WHSVS*STASKP 631
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase homolog
T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 80.9 bits (198), Expect = 5e-15
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Frame = +2
Query: 1397 FNMPRGVTCKINQLIRSFIWSGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMG 1456
F++P + K+ L R F+W G+ VNW+ + PK +GGLG++D NT L+G
Sbjct: 11 FSLP*KIIAKLESLQRRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTLLG 190
Query: 1457 KAIWCLMHKPNKLWVRVLSHKYLSNSSVLQVQAKPQDSQVWKGLLKARD-----RLHTGF 1511
K W L + + W +VL KY ++ + + +DS WK L+K + L
Sbjct: 191 KWRWDLFYIQQEPWAKVLQSKYGGWRALEEGSSGSKDSAWWKDLIKTQQLQRNIPLKRET 370
Query: 1512 VFRLGNGE-TSLWHDDWS 1528
++++G G+ W D W+
Sbjct: 371 IWKVGGGDRIKFWEDLWT 424
>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;} , partial (18%)
Length = 759
Score = 76.6 bits (187), Expect = 9e-14
Identities = 38/99 (38%), Positives = 54/99 (54%)
Frame = +2
Query: 1375 LAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSFIWSGKGGGHGWHLVNWEKIT 1434
+ GRV L KSV++A+P + F +P+ + K+ L R F+W G + V W I
Sbjct: 2 MGGRVTLIKSVLSALPIXXLSFFKIPQRIVDKLVTLQRQFLWGGTQHHNRIPWVKWADIC 181
Query: 1435 QPKDRGGLGVRDTELANTALMGKAIWCLMHKPNKLWVRV 1473
PK GGLG++D N AL G+ IW L N+LW R+
Sbjct: 182 NPKIDGGLGIKDLSNFNAALRGRWIWGLASNHNQLWARL 298
>TC213164
Length = 446
Score = 75.9 bits (185), Expect = 2e-13
Identities = 41/138 (29%), Positives = 69/138 (49%)
Frame = +3
Query: 1010 AKSLLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKKYWNRVGDSLWHMVKEAFQEGK 1069
A LL+ K EVR + + +PG DG F K++W+ + L + E + G
Sbjct: 6 ASDLLVARFEKKEVRATMWDRGNAKSPGPDGLNFKFIKEFWDILKTDLLRFLDEFYANGV 185
Query: 1070 VNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVITKVLVNRLRPFLRKLIGPMQSS 1129
+ + LIPKV P ++ + +PISL +K++ K+L R + L +I Q+
Sbjct: 186 FLKRSNAFFLALIPKVHDP*SLNEYKPISLIGCIYKIVAKLLSGRHKKVLPTIIDERQTV 365
Query: 1130 FLPGRGTMDNAFLAQEVI 1147
F+ GR T+ N +A E++
Sbjct: 366 FMEGRHTLHNVVIANEIM 419
>AW757033
Length = 441
Score = 74.7 bits (182), Expect = 4e-13
Identities = 38/94 (40%), Positives = 60/94 (63%)
Frame = -2
Query: 1216 FKPGRGLRQGDPMSPYLFVLCMERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVL 1275
F P RGLRQGDP++P LF + E L+ L++ V + +K + K P+S L +ADD +
Sbjct: 431 FSPHRGLRQGDPLAPLLFNIAAEGLTGLMREAVARNHYKSFAVGKYKKPVSILQYADDTI 252
Query: 1276 LFCEASVAQVNLLASTMQLFCDSSGLKINLSKSK 1309
F EA++ V ++ + ++ F +SGLKIN +KS+
Sbjct: 251 FFGEATMENVRVIKTILRGFELASGLKINFAKSR 150
>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
reverse transcriptase, partial (7%)
Length = 956
Score = 71.6 bits (174), Expect = 3e-12
Identities = 44/136 (32%), Positives = 71/136 (51%), Gaps = 4/136 (2%)
Frame = -2
Query: 1266 SHLFFADDVLLFCEASVAQVNLLASTMQLFCDSSGLKINLSKSKAIVSKGVSE---VVKD 1322
SH+ ADD+++FC+ + V+ L + QL+ DS G I+ KSK + + V+ D
Sbjct: 451 SHVMHADDIMIFCKGTSRNVHNLINFFQLYKDSFGQVISKHKSKIFIGSIPGQRLRVISD 272
Query: 1323 SISVV-APIPFVHDLGKYLGFPLKGGRIHRNRFNFLLESIQRKLGSWRANMLSLAGRVCL 1381
+ + IPF Y G P+ G+ R + + I+ KL SW+ ++LS+ GR+ L
Sbjct: 271 LLQYFHSDIPF-----NYFGVPIFKGKPTRRHLYCVADKIKCKLASWKGSILSIMGRIQL 107
Query: 1382 AKSVIAAMPTYTMQVF 1397
SVI M Y+ V+
Sbjct: 106 VNSVIHGMLLYSFSVY 59
Score = 63.5 bits (153), Expect = 8e-10
Identities = 75/277 (27%), Positives = 122/277 (43%), Gaps = 29/277 (10%)
Frame = -3
Query: 1138 DNAFLAQEVIHHMSKSTAKRGMVAFKIDLEKAYDSVSWSFLQETLELYGFPEVTINLIMS 1197
D + EVI+ + K G +A KID+ KA+D++ FL L +G+ N I
Sbjct: 828 DCTCVTSEVINMLDKKVFG-GNLALKIDIVKAFDTLDRDFLISVLNKFGYSHTFCNWIRV 652
Query: 1198 SVTSSQVSILWNGCRLPAFKPGRGLRQGDPMSPYLF-VLCMERLSVLIQ-----SLVDKG 1251
+ S+++SI NG + F RG+RQGDP+SP L+ C+E+ ++ + + D
Sbjct: 651 ILLSAKLSISVNGEPVGFFSCQRGVRQGDPLSPSLYRQRCLEQGTIYVDF*RKVATYDPS 472
Query: 1252 DWKPIR-----------LSKNGPP----ISHLFFA--DDVLLFCEASVAQVNLL------ 1288
W R GPP IS +FF+ VL+ AS + +LL
Sbjct: 471 QWGL*RGLMSCTQMT**FFARGPPEMCIIS*IFFSFIRIVLVK*LASTSLKSLLDLFLVK 292
Query: 1289 ASTMQLFCDSSGLKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFPLKGGR 1348
+ L C S+ + I+LS +S S+ SI+++ + LG+ P G
Sbjct: 291 GCVLSLICFSTSIVISLSTILESLSSKGSQREGTSIALLIKLSVSWPLGRAPFCP*WG-- 118
Query: 1349 IHRNRFNFLLESIQRKLGSWRANMLSLAGRVCLAKSV 1385
F L ++ + + ++ L GR CL K +
Sbjct: 117 ------EFSLSTLSFTVCFYTVSLYML-GRFCLLKDI 28
>TC231841
Length = 791
Score = 69.3 bits (168), Expect = 1e-11
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 13/173 (7%)
Frame = +3
Query: 1582 IVPNRQDVWTWETNSMGIYTVRGAYRWLQDQQSHLPVVDDWNWIWKLKVPEKIRTFVWLT 1641
I P + D W W+ + G YT + AY L + + +WKLK+P KI F W
Sbjct: 45 IQPQQGDQWVWKADPSGQYTAKSAYGVLWGEMFEEQQDGVFEELWKLKLPSKITIFAWRL 224
Query: 1642 LQNSL--QVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELWLKFGAFAWPNFT 1699
+++ L + NL R + ++ P C C + EE H C +W + + +W N
Sbjct: 225 IRDRLPTRSNLRRKQIEV-DDPRCPFCRSAEESAAHLFFHCSRIAPVW--WESLSWVNLL 395
Query: 1700 AG----------DHSSWIRSQARSNNGVKFIVGL-WGVWKWRNNMIFEDSPWS 1741
H + + R++ + + L W +WK RNNMIF + ++
Sbjct: 396 GVFPNHPRQHFLQHIYGVTAGMRASRWKWWWLALTWTIWKQRNNMIFSNGTFN 554
>BI972659
Length = 453
Score = 68.9 bits (167), Expect = 2e-11
Identities = 48/156 (30%), Positives = 76/156 (47%), Gaps = 4/156 (2%)
Frame = +1
Query: 1279 EASVAQVNLLASTMQLFCDSSGLKINLSKSKAIVSKGVSEVVKDSISVV----APIPFVH 1334
EAS + +L S ++ F SGL+IN +KS+ + D+ ++ IPF
Sbjct: 7 EASWDNIIVLKSMLRGFEMVSGLRINYAKSQFGIVGFQPNWAHDAAQLLNCRQLDIPF-- 180
Query: 1335 DLGKYLGFPLKGGRIHRNRFNFLLESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTM 1394
YLG P+ R + L+ + KL W LS+ GRV L KSV+ A+P Y +
Sbjct: 181 ---HYLGMPIAVKASSRMVWEPLINKFKAKLSKWNQKYLSMGGRVTLIKSVLNALPIYLL 351
Query: 1395 QVFNMPRGVTCKINQLIRSFIWSGKGGGHGWHLVNW 1430
F +P+ + K+ L R+F+W GG + ++W
Sbjct: 352 SFFKIPQRIVDKLVSLQRTFMW---GGNQHHNRISW 450
>TC213061
Length = 823
Score = 66.2 bits (160), Expect = 1e-10
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Frame = +2
Query: 1587 QDVWTWETNSMGIYTVRGAYRWLQDQQSHLPVVDDWNWIWKLKVPEKIRTFVWLTLQNSL 1646
+D W W S G Y R AYR +++ ++ +WKLKVP K+ F W L++ L
Sbjct: 125 EDQWVWAAESSGSYLARSAYRVIREGIPEEEQDREFKELWKLKVPMKVTMFAWRLLKDIL 304
Query: 1647 QV--NLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELWLK-------FGAFA-WP 1696
NL R R ++ C C + +E H C +W + GAF P
Sbjct: 305 PTRDNLRRKRVEL-HEYVCPLCRSMDESASHLFFHCSKILPIWWESLSWVKLVGAFPHHP 481
Query: 1697 NFTAGDHSSWIRSQARSNNGVKFIVGL-WGVWKWRNNMIFEDSPWS 1741
HS + + N + + L W +WK RN++IF ++ ++
Sbjct: 482 RHHFHQHSHEVYQGLQGNRWKWWWLALTWTIWKHRNDIIFSNATFN 619
>CO979823
Length = 853
Score = 65.1 bits (157), Expect = 3e-10
Identities = 44/170 (25%), Positives = 74/170 (42%), Gaps = 13/170 (7%)
Frame = -2
Query: 1582 IVPNRQDVWTWETNSMGIYTVRGAYRWLQDQQSHLPVVDDWNWIWKLKVPEKIRTFVWLT 1641
I P R+D W W+ G Y+ + Y L + + D+ IWKLK+P K F W
Sbjct: 720 IHPQREDKWLWKPEPGGHYSTKSGYHVLWGELTEEIQDADFAEIWKLKIPTKAAVFAWRL 541
Query: 1642 LQNSL--QVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELWLKFGAFAWPNFT 1699
+++ L + NL R R M C C+ EE H C + LW + + +W N
Sbjct: 540 VRDRLPTKSNLRR-RQVMVQDMVCPLCNNIEEGAAHLFFNCTKTLPLW--WESMSWVNLK 370
Query: 1700 AG----DHSSWIRSQARSNNGVK-------FIVGLWGVWKWRNNMIFEDS 1738
+++ +G+K +I W +W+ RN ++F+++
Sbjct: 369 TAMPQTPRQHFLQYGTDIADGLKSKRWKCWWIALTWTIWQHRNKVVFQNA 220
>CF922212
Length = 445
Score = 63.2 bits (152), Expect = 1e-09
Identities = 42/137 (30%), Positives = 61/137 (43%), Gaps = 8/137 (5%)
Frame = -2
Query: 1399 MPRGVTCKINQLIRSFIWSGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGKA 1458
+P V K+ +L + F+W G G VNW+ + PK++ GLG RD N AL+GK
Sbjct: 441 VPNKVLDKLVRLQQWFLWGGGLGQKKIAWVNWDSVCLPKEKEGLGNRDLRKFNYALLGKR 262
Query: 1459 IWCLMHKPNKLWVRVLSHKYLSNSSVLQVQAKPQDSQVWKGLLKARDRLHTGFVF----- 1513
W L H +L RVL KY ++ + + +S W+ + G F
Sbjct: 261 RWNLFHHQGELGARVLDSKYKRWRNLDEERRVKSESFWWQEISFITHSTEDGSWFEKRTK 82
Query: 1514 --RLG-NGETSLWHDDW 1527
RLG + W D W
Sbjct: 81 TGRLGCRAKVRFWEDGW 31
>TC233392
Length = 1145
Score = 62.8 bits (151), Expect = 1e-09
Identities = 49/181 (27%), Positives = 73/181 (40%), Gaps = 27/181 (14%)
Frame = -1
Query: 1588 DVWTWETNSMGIYTVRGAYRWLQDQQSHLPVVDD---WNWIWKLKVPEKIRTFVWLTLQN 1644
D W W+ +Y+ R AY+ LQ HL D +WKLK+P K F W +++
Sbjct: 656 DTWVWKHEPNELYSTRSAYKLLQ---GHLEGEDQDGALQDLWKLKIPAKASIFAWRLIRD 486
Query: 1645 SL--QVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELWLKFGAFAWPNFTAGD 1702
L + NLHR R + C C EED H C + LW W +
Sbjct: 485 RLPTKSNLHR-RQVVLEDSLCPFCRIREEDASHIFLECNKIRPLW-------W------E 348
Query: 1703 HSSWIRS---------------------QARSNNGVKFIVGL-WGVWKWRNNMIFEDSPW 1740
+W+RS R N + + L W +WK RN +IF+++ +
Sbjct: 347 SQTWVRSLGVSPINKRQHFLQHVHGTPGSKRYNRWKTWWIALTWSLWKHRNQVIFQNAQF 168
Query: 1741 S 1741
+
Sbjct: 167 N 165
>TC211809
Length = 895
Score = 62.8 bits (151), Expect = 1e-09
Identities = 42/153 (27%), Positives = 66/153 (42%), Gaps = 13/153 (8%)
Frame = +2
Query: 1598 GIYTVRGAYRWLQDQQSHLPVVDDWNWIWKLKVPEKIRTFVWLTLQNSLQ--VNLHRFRC 1655
G Y+ + AYR L + PV + +W LK+P K F W +++ L NL R R
Sbjct: 200 GNYSTKSAYRLLMEATGEFPVDRTYVDLWNLKIPSKAIVFAWRLIKDRLPTWTNL-RVRQ 376
Query: 1656 KMAASPSCSRCSAPEEDILHCLRTCPHSQELWLKFGAFAWPN----FTAGDHSSWIRSQA 1711
C C++ EED H C ++ LW + +W N F +++
Sbjct: 377 VELNDSRCPLCNSSEEDAAHLFFHCTKTEXLW--WETQSWVNSLGAFPHNPKDHFLQHDN 550
Query: 1712 RSNNGVK-------FIVGLWGVWKWRNNMIFED 1737
RS GV ++ W +WK RN ++F +
Sbjct: 551 RSAGGVXARRWKCLWVALTWVIWKHRNGVVFHN 649
>BI315739
Length = 442
Score = 61.6 bits (148), Expect = 3e-09
Identities = 25/51 (49%), Positives = 41/51 (80%)
Frame = +3
Query: 1227 PMSPYLFVLCMERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLF 1277
P+SPYLF +CME+L++LIQS V++ W+PI++S+NGP IS ++ + ++ F
Sbjct: 48 PLSPYLF*ICMEKLAILIQSKVNEETWEPIKISRNGPGISPIYSSQIIVYF 200
Score = 50.4 bits (119), Expect = 7e-06
Identities = 26/53 (49%), Positives = 35/53 (65%)
Frame = +2
Query: 1265 ISHLFFADDVLLFCEASVAQVNLLASTMQLFCDSSGLKINLSKSKAIVSKGVS 1317
ISHLFF D+ LLF +A+ +QV L+ +Q FC + GLK L KS+ + K VS
Sbjct: 164 ISHLFFPDNCLLFVKATSSQVKLVRDVLQQFCLT*GLKAGLQKSRFLA*KNVS 322
>TC223668
Length = 866
Score = 61.2 bits (147), Expect = 4e-09
Identities = 42/123 (34%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Frame = -3
Query: 1713 SNNGVKF-IVGLWGVWKWRNNMIFEDSPWSLEEAWRRVCHEHDEIVAVLGEEAGSMD--C 1769
SNN + ++ W WKW N +IF WS + + C + +++ ++ S
Sbjct: 765 SNNDCAYKVLEAWWAWKWCN*VIFSPLIWSFQFIKKIHC*GYCLQSSLVSKDLVSSKRLT 586
Query: 1770 WLGSRWQPPMAGSIKLNVDGSYRDVDDSSGVGGLARDPSGNWLFGFLAHRRGGNAFLAEA 1829
W PP+ +KLNVDGS VGGL RD G WLF F H GN L+E
Sbjct: 585 WTSP---PPLLNEVKLNVDGSGHYEPHVMEVGGLIRDGVGRWLFRFARHCGLGNPLLSEL 415
Query: 1830 QAL 1832
AL
Sbjct: 414 FAL 406
>AI496436
Length = 414
Score = 60.8 bits (146), Expect = 5e-09
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Frame = +1
Query: 1298 SSGLKINLSKSK--AIVSKGV--SEVVKDSISVVAPIPFVHDLGKYLGFPLKGGRIHRNR 1353
SSGLKIN +KS+ I + E S V +PFV YLG P+ H +
Sbjct: 25 SSGLKINFAKSQFGTICKSDIWRKEAADYLNSSVLSMPFV-----YLGIPIGANSRHSDV 189
Query: 1354 FNFLLESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCK 1406
+ ++ +RKL SW+ +S GRV L SV+ A+P Y + F +P V K
Sbjct: 190 WEPVVRKCERKLASWKQKYVSFGGRVTLINSVLTALPIYLLSFFRIPDKVVDK 348
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.332 0.143 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,419,848
Number of Sequences: 63676
Number of extensions: 1686740
Number of successful extensions: 10397
Number of sequences better than 10.0: 125
Number of HSP's better than 10.0 without gapping: 10002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10349
length of query: 1898
length of database: 12,639,632
effective HSP length: 111
effective length of query: 1787
effective length of database: 5,571,596
effective search space: 9956442052
effective search space used: 9956442052
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0114.7