TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0114.12
         (1414 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP595172 polyprotein [Glycine max]                                    213  5e-55
CF922488                                                              204  2e-52
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...   189  1e-47
NP334778 reverse transcriptase [Glycine max]                          151  2e-36
NP395547 reverse transcriptase [Glycine max]                          147  4e-35
BI316922                                                              146  6e-35
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...   139  1e-32
NP395548 reverse transcriptase [Glycine max]                          134  4e-31
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...   105  7e-29
TC211815                                                               75  5e-26
BG725601 similar to PIR|H86337|H86 protein F5M15.26 [imported] -...   100  5e-21
AW184779                                                               71  1e-20
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei...    84  6e-16
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...    83  1e-15
BI321666                                                               81  3e-15
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)          60  2e-11
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp...    67  4e-11
BE802896                                                               65  2e-10
TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial...    65  2e-10
TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (...    58  3e-08

>NP595172 polyprotein [Glycine max]
          Length = 4659

 Score =  213 bits (542), Expect = 5e-55
 Identities = 146/470 (31%), Positives = 236/470 (50%), Gaps = 9/470 (1%)
 Frame = +1

Query: 357  QVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDP--KVITHKLAIRPG 414
            Q +V +  LK    L T  +  L  LL     +FA     VP   P  +   H + ++ G
Sbjct: 1627 QKEVPEDTLK---DLPTNIDPELAILLHTYAQVFA-----VPASLPPQREQDHAIPLKQG 1782

Query: 415  ATPV-IQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPT---WLANVVMVKKANGKWRM 470
            + PV ++P R    +K      + EK+I+   ++ +  P+   +   +++VKK +G WR 
Sbjct: 1783 SGPVKVRPYRYPHTQKD-----QIEKMIQEMLVQGIIQPSNSPFSLPILLVKKKDGSWRF 1947

Query: 471  CTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSDEESTAFMT 530
            CTDY +LN +  KDS+P+P VD+L+D   G +  S +D  SGY+QI++ P D E TAF T
Sbjct: 1948 CTDYRALNAITVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRT 2127

Query: 531  NQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARASDHGGDLKE 590
            +  +Y +  MPFGL NA AT+Q LM+KIF   + + + V+ DD+++ SA   DH   L+ 
Sbjct: 2128 HHGHYEWLVMPFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLES 2307

Query: 591  AFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSPTSVKEVQR 650
                L+ +Q+     KCSFG     +LG  ++  G+ +   K +A+L+  +P +VK+++ 
Sbjct: 2308 VLQTLKQHQLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRG 2487

Query: 651  LTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATLPVLSKPTP 710
              G      RF+    + A P    L+K+S F W  E E AF KLK+ +   PVLS P  
Sbjct: 2488 FLGLTGYYRRFIKSYANIAGPLTDLLQKDS-FLWNNEAEAAFVKLKKAMTEAPVLSLPDF 2664

Query: 711  GVPLVLYLAVTDKAVSTVLLQEEGKKQKVIYFVSHTLQGAELRYQKIEKAALAILKTARR 770
              P +L    +   V  VL    G+    I + S  L     +     +  LAI +   +
Sbjct: 2665 SQPFILETDASGIGVGAVL----GQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALSK 2832

Query: 771  LRPYFQSFQVKVKTDV-PLRQVLQKPDLSGRLVSWSVELSEYD--IQYEP 817
             R Y    +  ++TD   L+ ++ +   +    +W  +   YD  I+Y+P
Sbjct: 2833 FRHYLLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKP 2982



 Score =  119 bits (297), Expect = 1e-26
 Identities = 110/428 (25%), Positives = 184/428 (42%), Gaps = 21/428 (4%)
 Frame = +1

Query: 1007 LPWMESIKTFLE--------NPPKEDDLNTRTKRREASFYTLVDGELYRRG-IMSPMLKC 1057
            L W E    FLE        +P  +  + T  +  +AS YT+ +G LY +  ++ P  + 
Sbjct: 3028 LAWSEPHSIFLEELRARLISDPHLKQLMETYKQGADASHYTVREGLLYWKDRVVIPAEEE 3207

Query: 1058 VDTKDALGIMAEVHEGVCSSHIG-GRSLAVKVIRAGFYWPTMKKDCLEYVKKCEKCQVFS 1116
            +  K    I+ E H      H G  R+LA   ++A FYWP M++D   Y++KC  CQ   
Sbjct: 3208 IVNK----ILQEYHSSPIGGHAGITRTLAR--LKAQFYWPKMQEDVKAYIQKCLICQQAK 3369

Query: 1117 DLHKAPPEELTTMMAPWPFAMW---GTDILGPFPVAKAQMKYIIVAVDYFTKWIEAEAV- 1172
              +  P   L  +  P P  +W     D +   P +   +  I+V +D  TK+     + 
Sbjct: 3370 SNNTLPAGLLQPL--PIPQQVWEDVAMDFITGLPNSFG-LSVIMVVIDRLTKYAHFIPLK 3540

Query: 1173 ATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVEHPQT 1232
            A   +  V       IV   G+P ++V D    FTS+  +      G  +  +S  HPQ+
Sbjct: 3541 ADYNSKVVAEAFMSHIVKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQS 3720

Query: 1233 NGQAESANKVILKGLKKKLDEAKGLWAEELPGVLWAYNTTEQSSTKETPYRLTYGTDAML 1292
            +GQ+E  NK +   L+    E    W + LP   + YNT    S   TP+R  YG +   
Sbjct: 3721 DGQSEVLNKCLEMYLRCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPPT 3900

Query: 1293 SVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKFSTKVVPRK 1352
                       A   E     + +   + +   + +  ++ +A K ++   F        
Sbjct: 3901 LTRQACSIDDPAEVREQLTDRDALLAKLKINLTRAQQVMKRQADKKRLDVSF-------- 4056

Query: 1353 MRVGDLVL*K-------NTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPRTW 1405
             ++GD VL K       + +  K+ KLS  + GP++++  +G  AYKLE  S  ++   +
Sbjct: 4057 -QIGDEVLVKLQPYRQHSAVLRKNQKLSMRYFGPFKVLAKIGDVAYKLELPSAARIHPVF 4233

Query: 1406 NASHLKQY 1413
            + S LK +
Sbjct: 4234 HVSQLKPF 4257


>CF922488 
          Length = 741

 Score =  204 bits (519), Expect = 2e-52
 Identities = 107/245 (43%), Positives = 147/245 (59%)
 Frame = +3

Query: 461 VKKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHP 520
           V K +GK  MC DY  LN   PKD +PLP+++ LVD  +     S MD +SGYNQI + P
Sbjct: 3   VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182

Query: 521 SDEESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSAR 580
            D E T F+T    +CYK M FGLKN GATYQR M  +F   + + +EVY+DDMIVKS  
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362

Query: 581 ASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMK 640
             +H  +L++ F +LR Y+++LNP KC F ++  K L F+ + RGIEV+ +K + ILEM 
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMA 542

Query: 641 SPTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLA 700
            P + K+VQ   GR+  + RF+        P F  L KN   +W  +C  AF ++K+ L 
Sbjct: 543 KPHTEKQVQGFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLI 722

Query: 701 TLPVL 705
              VL
Sbjct: 723 NPHVL 737


>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
          Length = 843

 Score =  189 bits (479), Expect = 1e-47
 Identities = 92/236 (38%), Positives = 138/236 (57%), Gaps = 4/236 (1%)
 Frame = +1

Query: 1008 PWMESIKTFL---ENPPKEDDLNTRTKRREASFYTLVDGELYRRGIMSPMLKCVDTKDAL 1064
            PW   IK ++   E  P+  D + RT RR A+ + +    LY+R      L+CVD ++A 
Sbjct: 136  PWYFDIKRYVISKEYLPEIADNDKRTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREAN 315

Query: 1065 GIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKCEKCQVFSDLHKAPPE 1124
             ++ EVHEG   +H  G ++A K++RAG+YW TM+ DC  +V+KC KCQ F+D   APP 
Sbjct: 316  HMIEEVHEGSFGTHANGHAMARKILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPPH 495

Query: 1125 ELTTMMAPWPFAMWGTDILGPF-PVAKAQMKYIIVAVDYFTKWIEAEAVATITAAKVRNF 1183
             L  M +PWPF+MWG D++G   P A    ++I+VA+DYFTKW+EA +   +    V  F
Sbjct: 496  PLNVMSSPWPFSMWGIDVIGAIEPKASNGHRFILVAIDYFTKWVEAASYTDVMRGVVVRF 675

Query: 1184 LWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVEHPQTNGQAESA 1239
            + + I+CR+G+P  ++ DNGT   + +  E C E  I+    +   P+ N   E A
Sbjct: 676  IKKEIICRYGLPRKIITDNGTNLNNKMMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843


>NP334778 reverse transcriptase [Glycine max]
          Length = 431

 Score =  151 bits (381), Expect = 2e-36
 Identities = 70/143 (48%), Positives = 92/143 (63%)
 Frame = +3

Query: 469 RMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSDEESTAF 528
           RMC DY  LN+  PKD++PLP++D L+   +   L S MD +SGYNQI M P D E T F
Sbjct: 3   RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182

Query: 529 MTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARASDHGGDL 588
           +T    +CYK M FGLKN GATY R M  +F   + + +E YVD+MI KS    +H  +L
Sbjct: 183 ITLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNL 362

Query: 589 KEAFDQLRTYQMKLNPEKCSFGI 611
           +  F QLR Y+++LNP KC FG+
Sbjct: 363 QNLFGQLRKYRLRLNPRKCVFGL 431


>NP395547 reverse transcriptase [Glycine max]
          Length = 762

 Score =  147 bits (370), Expect = 4e-35
 Identities = 84/248 (33%), Positives = 126/248 (49%), Gaps = 18/248 (7%)
 Frame = +1

Query: 433 VQLETEKLIKARFIREVQYPTWLANVVMVKKANG------------------KWRMCTDY 474
           V+ E  KL++A  I  +   +W++ V +V K  G                  +WRMC DY
Sbjct: 1   VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180

Query: 475 TSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSDEESTAFMTNQAN 534
             LN+   KD YPLP +D+++   +       +D YSGYNQI + P D+E TAF    + 
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360

Query: 535 YCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARASDHGGDLKEAFDQ 594
           + Y+ MPFGL NA  T+QR M  IF   V + +EV++DD     A   +   +L++   +
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540

Query: 595 LRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSPTSVKEVQRLTGR 654
                + LN EKC F +Q G  LG  ++ RGIEV  +K   I ++  P +VK +    G 
Sbjct: 541 CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720

Query: 655 MAALSRFL 662
           +    RF+
Sbjct: 721 VGFYRRFI 744


>BI316922 
          Length = 405

 Score =  146 bits (369), Expect = 6e-35
 Identities = 66/134 (49%), Positives = 92/134 (68%)
 Frame = +3

Query: 1069 EVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKCEKCQVFSDLHKAPPEELTT 1128
            E+H G+C  H   + +  +V+R G+Y  TM+K C EYVKKCE+C  F ++     EEL  
Sbjct: 3    EMHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHN 182

Query: 1129 MMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIEAEAVATITAAKVRNFLWQRI 1188
            ++APWPFA+ G DIL PFP++K Q+KY++V +D FTKWIE E +A I+ A VR F+ + I
Sbjct: 183  IVAPWPFAI*GVDILRPFPLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RNI 362

Query: 1189 VCRFGVPMALVMDN 1202
            VC FG+P  L+ DN
Sbjct: 363  VC*FGIPNTLISDN 404


>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
          Length = 402

 Score =  139 bits (349), Expect = 1e-32
 Identities = 65/132 (49%), Positives = 92/132 (69%)
 Frame = +2

Query: 505 SLMDAYSGYNQIMMHPSDEESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVG 564
           S MD +SGYNQI M   D E T F+T    + Y+ M FGLKN GATYQR M  +F   + 
Sbjct: 5   SFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMMH 184

Query: 565 RNMEVYVDDMIVKSARASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSR 624
           + +EVYVDDMI KS   ++H  +L + F +L+ YQ+KLNP KC+FG++ GK LGF+++ +
Sbjct: 185 KEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVSQK 364

Query: 625 GIEVNPDKGRAI 636
           GIE++P+K +A+
Sbjct: 365 GIEIDPEKVKAL 400


>NP395548 reverse transcriptase [Glycine max]
          Length = 762

 Score =  134 bits (336), Expect = 4e-31
 Identities = 77/248 (31%), Positives = 127/248 (51%), Gaps = 18/248 (7%)
 Frame = +1

Query: 433 VQLETEKLIKARFIREVQYPTWLANVVMVKKANG------------------KWRMCTDY 474
           V+ E  KL++   I  +    W++ V++V K  G                   W++C DY
Sbjct: 1   VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180

Query: 475 TSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSDEESTAFMTNQAN 534
             LN+   KD +PLP +D++++  +G+     +DAY GYNQI++ P D+E  AF      
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360

Query: 535 YCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARASDHGGDLKEAFDQ 594
           + Y+ +PFGL NA  T+Q  M  IF+  V +++EV++DD  V           L+    +
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540

Query: 595 LRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSPTSVKEVQRLTGR 654
                + LN EKC F ++ G  LG  +++RGIEV+  K   I ++  P++VK ++   G+
Sbjct: 541 CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720

Query: 655 MAALSRFL 662
                RF+
Sbjct: 721 ARFYRRFI 744


>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
          Length = 803

 Score =  105 bits (263), Expect(2) = 7e-29
 Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 10/210 (4%)
 Frame = +2

Query: 896  LRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLSKYLEVVRRLMMEVKEIKIEHVPR 955
            ++ AI+  V+ L + GDS LV+ Q++GE + +DP L  Y   ++ L     EI   HV  
Sbjct: 206  VQAAIDSNVKLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA* 385

Query: 956  GQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLVEIKLK-------VVKSVNEGELP 1008
             +N+ AD LA L S  +L           P   +  +E + +       +V+   +G+ P
Sbjct: 386  EENQMADALATLVSMFQL----------TPHGDLPYIEFRCRGRPAHCCLVEEERDGK-P 532

Query: 1009 WMESIKTFLEN---PPKEDDLNTRTKRREASFYTLVDGELYRRGIMSPMLKCVDTKDALG 1065
            W   IK ++E+   P +  D + R KRR A+ + +    LY+R     +L CV+ K+   
Sbjct: 533  WYFDIKRYVESKEYPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVEN 712

Query: 1066 IMAEVHEGVCSSHIGGRSLAVKVIRAGFYW 1095
            ++ EVHEG   +H  G ++A K++RAG+YW
Sbjct: 713  MLGEVHEGSFGTHSNGHAMARKILRAGYYW 802



 Score = 41.6 bits (96), Expect(2) = 7e-29
 Identities = 18/53 (33%), Positives = 30/53 (55%)
 Frame = +1

Query: 839 EKTQGEWVLSVDGSSNNTGSGAGITIESPDKMIIEQSLKFEFKASNNQSEYEA 891
           ++ + +W++  D +SN  G G G  + SPD   I  + +  F  +NN +EYEA
Sbjct: 34  DEDRDKWIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEYEA 192


>TC211815 
          Length = 704

 Score = 75.1 bits (183), Expect(2) = 5e-26
 Identities = 37/67 (55%), Positives = 46/67 (68%)
 Frame = +3

Query: 1201 DNGTQFTSSVTREFCAEMGIEMRFASVEHPQTNGQAESANKVILKGLKKKLDEAKGLWAE 1260
            DNG QFT+    EF + + I+ R  SV+HPQTN +AE+ANKVIL  LKK LD A G W E
Sbjct: 3    DNGLQFTNRKLNEFPSGLNIKHRVTSVKHPQTNRRAEAANKVILGDLKKLLDGANGRWVE 182

Query: 1261 ELPGVLW 1267
            +L  +LW
Sbjct: 183  DLVEILW 203



 Score = 62.8 bits (151), Expect(2) = 5e-26
 Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
 Frame = +2

Query: 1274 QSSTKETPYRLTYGTDAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRN 1333
            QS+T ETP+ L YG   ML +E+         F E  N E L  +L ++ + + +  I  
Sbjct: 230  QSTTHETPF*LIYGISVMLPIEVGEVFL*RHYFAEV*NKEALQIDLDLIKQVREDTVIMT 409

Query: 1334 EAGKVKVARKFSTKVVPRKMRVGDLV--L*KNTIPDKHNKLSPNWGGPYRIIGDVGGEAY 1391
             A K ++ R F++K+       G  +  + ++      +K + N  GP++I  +    AY
Sbjct: 410  *AFKQRMTRCFNSKLPSTV*GRGPSMEGIQRSLEVLVRSKFTTN*EGPFKIRHNSKNGAY 589

Query: 1392 KLEQLSGQKVPRTWNASHLKQYF 1414
            KLE+LSG+ V R WN+ HLK Y+
Sbjct: 590  KLEELSGKVVLRIWNSMHLKVYY 658


>BG725601 similar to PIR|H86337|H86 protein F5M15.26 [imported] - Arabidopsis
           thaliana, partial (1%)
          Length = 285

 Score =  100 bits (249), Expect = 5e-21
 Identities = 50/91 (54%), Positives = 61/91 (66%)
 Frame = -3

Query: 407 HKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANVVMVKKANG 466
           HKLAI      V Q  R++ EE+ + V  E  KL  A FIR++ Y T L +VVMVKK NG
Sbjct: 277 HKLAICNDVKLVTQRKRKIREERCQTV*QEVVKLAIASFIRDINYST*LFSVVMVKKPNG 98

Query: 467 KWRMCTDYTSLNKVCPKDSYPLPNVDKLVDG 497
           KWR+CTDY  LN  CPKD+YPLPN+D + DG
Sbjct: 97  KWRICTDYIDLN*ACPKDAYPLPNIDHMTDG 5


>AW184779 
          Length = 432

 Score = 71.2 bits (173), Expect(2) = 1e-20
 Identities = 33/74 (44%), Positives = 48/74 (64%)
 Frame = +1

Query: 1045 LYRRGIMSPMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLE 1104
            LY+R     +L+CVD ++A  ++ EVHEG   +H    ++A K++R G+YW TM+ DC  
Sbjct: 16   LYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTMESDCCI 195

Query: 1105 YVKKCEKCQVFSDL 1118
            +V KC KCQ  SDL
Sbjct: 196  HVWKCHKCQ--SDL 231



 Score = 48.1 bits (113), Expect(2) = 1e-20
 Identities = 24/62 (38%), Positives = 36/62 (57%), Gaps = 10/62 (16%)
 Frame = +3

Query: 1129 MMAPWPFA---------MWGTDILGPF-PVAKAQMKYIIVAVDYFTKWIEAEAVATITAA 1178
            M+ P P+          MWG D++G   P A     +I+VA+DYFTKW+EA + A++T +
Sbjct: 240  MLTPHPYL*MSWQHLGHMWGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAVSYASVTRS 419

Query: 1179 KV 1180
             V
Sbjct: 420  VV 425


>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
            partial (8%)
          Length = 1320

 Score = 83.6 bits (205), Expect = 6e-16
 Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
 Frame = +3

Query: 353  EETKQVQVKD----KFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDPKVITHK 408
            EET+ V +      + +KIG+G+T    + LI LL D  D+FAW+  D+PG+   ++ H+
Sbjct: 978  EETELVDLGSGSGKREVKIGTGITAPIREELIILLRDYQDIFAWSYQDMPGLSSDIVQHR 1157

Query: 409  LAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANVVMV 461
            L + P  +PV Q +RRM  E    ++ E +K   A F+   +YP W+AN+V +
Sbjct: 1158 LPLNPECSPVKQKLRRMKPETSLKIKEEVKK*FDAGFLAVARYPKWVANIVPI 1316


>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
          Length = 669

 Score = 82.8 bits (203), Expect = 1e-15
 Identities = 56/183 (30%), Positives = 92/183 (49%), Gaps = 5/183 (2%)
 Frame = +1

Query: 1237 ESANKVILKGLKKKLDEAKGLWAEELPGVLWAYNTTEQSSTKETPYRLTYGTDAMLSVEI 1296
            E+ANK I K ++K     K  W E LP  L  Y T+ ++ST  TP+ L YG +A+L  E+
Sbjct: 1    EAANKNIKKIIQKMTVSYKD-WHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEV 177

Query: 1297 ENQSWRV---ARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKFSTKVVPRKM 1353
            E  S R+   +   E++  +     L ++  ++  A       + ++   F  KV  RK 
Sbjct: 178  EVPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKF 357

Query: 1354 RVGDLVL*K--NTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPRTWNASHLK 1411
              GDLVL K  + + D   K +PN+ GP+ +     G A  L  + G+++P   N+  +K
Sbjct: 358  HEGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDVVK 537

Query: 1412 QYF 1414
            +Y+
Sbjct: 538  RYY 546


>BI321666 
          Length = 430

 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 45/120 (37%), Positives = 67/120 (55%)
 Frame = +2

Query: 1084 LAVKVIRAGFYWPTMKKDCLEYVKKCEKCQVFSDLHKAPPEELTTMMAPWPFAMWGTDIL 1143
            ++  V+++ FY P++ KD   + + C KCQ    + K     L T++    F  WG D +
Sbjct: 2    ISTNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEIFDYWGIDFV 181

Query: 1144 GPFPVAKAQMKYIIVAVDYFTKWIEAEAVATITAAKVRNFLWQRIVCRFGVPMALVMDNG 1203
            GPFP + +  +YI+V VDY +KW+EA A     A  V  FL ++I  R GVP  L+ DNG
Sbjct: 182  GPFPPSFSN-EYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLI-DNG 355


>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
          Length = 589

 Score = 60.5 bits (145), Expect(2) = 2e-11
 Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 1/162 (0%)
 Frame = +1

Query: 644 SVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATLP 703
           SV +++   G  +   RF+P     A+P    +KKN  F W E+ EQAF  LKE L   P
Sbjct: 109 SVGDIRSFHGLASFYRRFVPNFSTVASPLNELVKKNMAFTWGEKQEQAFALLKEKLTKAP 288

Query: 704 VLSKPTPGVPLVLYLAVTDKAVSTVLLQEEGKKQKVIYFVSHTLQGAELRYQKIEKAALA 763
           VL+ P       L    +   V  VLLQ       + YF S  L  A L Y   +K   A
Sbjct: 289 VLALPDFSKTFELECDASGVGVRAVLLQ---GGHPIAYF-SEKLHSATLNYPTYDKELYA 456

Query: 764 ILKTARRLRPYFQSFQVKVKTD-VPLRQVLQKPDLSGRLVSW 804
           +++  +    +    +  + +D   L+ +  K  L+ R   W
Sbjct: 457 LIRAPQTWEHFLVCKEFVIHSDHQSLKYIRGKSKLNKRHAKW 582



 Score = 27.7 bits (60), Expect(2) = 2e-11
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 616 FLGFMLTSRGIEVNPDKGRAILEMKSPTSVKEV 648
           F GF++   G++++P+K +AI E   P  V E+
Sbjct: 23  FSGFVVGRNGVQMDPEKIKAIQEWPPP*KVWEI 121


>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
            {Arabidopsis thaliana}, partial (13%)
          Length = 378

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
 Frame = -3

Query: 1219 GIEMRFASVEHPQTNGQAESANKVILKGLKKKLDEAKGLWAEELPGVLWAYNTTEQSSTK 1278
            G+  R ++  HPQTNGQAE +N+ I + L+K +  ++  W+  L   LWA+ T  ++   
Sbjct: 352  GVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHRTAYKAPIG 173

Query: 1279 ETPYRLTYGTDAMLSVEIENQSW---RVARFNENDNGENLIANLIMLPEEQREAH 1330
             +PYR+ +G    L VEIE++++   +   F+ +  GE     L  L E + EA+
Sbjct: 172  MSPYRVVFGKACHLPVEIEHKAYWAVKTCNFSMDQAGEERKLQLSELDEIRLEAY 8


>BE802896 
          Length = 416

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 40/133 (30%), Positives = 60/133 (45%)
 Frame = -2

Query: 653 GRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATLPVLSKPTPGV 712
           G      RF+      A P    L+K  +F + ++C+ AF  LK  L T P++  P    
Sbjct: 406 GHAGFYRRFIRDFRKVALPLSNLLQKEVEFDFNDKCK*AFDCLKRALITTPIIQAPDWTA 227

Query: 713 PLVLYLAVTDKAVSTVLLQEEGKKQKVIYFVSHTLQGAELRYQKIEKAALAILKTARRLR 772
           P  L    ++ A+  VL Q+  K  +VIY+ S TL  A+  Y   EK  LAI+    +  
Sbjct: 226 PFELMCDASNYALGVVLAQKIDKLPRVIYYSSRTLDAAQANYTTTEKELLAIVFALEKFH 47

Query: 773 PYFQSFQVKVKTD 785
            Y    ++ V  D
Sbjct: 46  SYLLGTRIIVYID 8


>TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (31%)
          Length = 724

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 34/87 (39%), Positives = 51/87 (58%)
 Frame = +1

Query: 882 ASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLSKYLEVVRRL 941
           A+NN +EY A+I G++ A++ G   + I+GDS+LV  Q+ G ++VK+  LS    V + L
Sbjct: 61  ATNNAAEYRAMILGMKYALKKGFTGIRIQGDSKLVCMQIDGSWKVKNENLSTLYNVAKEL 240

Query: 942 MMEVKEIKIEHVPRGQNERADVLAKLA 968
             +    +I HV R  N  AD  A LA
Sbjct: 241 KDKFSSFQISHVLRNFNSDADAQANLA 321


>TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (32%)
          Length = 482

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 28/73 (38%), Positives = 45/73 (61%)
 Frame = -3

Query: 1229 HPQTNGQAESANKVILKGLKKKLDEAKGLWAEELPGVLWAYNTTEQSSTKETPYRLTYGT 1288
            HPQTNGQAE +NK I + L+  +  ++  WA +L    WAY    ++    +P++L YG 
Sbjct: 231  HPQTNGQAEVSNKEIKRVLENIVVSSRKDWALKLDDAFWAYRIAFKTPIGLSPFQLVYGK 52

Query: 1289 DAMLSVEIENQSW 1301
               LSVE+E++++
Sbjct: 51   ACHLSVELEHKAY 13


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,561,751
Number of Sequences: 63676
Number of extensions: 710145
Number of successful extensions: 3399
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 3336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3390
length of query: 1414
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1305
effective length of database: 5,698,948
effective search space: 7437127140
effective search space used: 7437127140
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)