BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0114.10
(1082 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 241 1e-63
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 239 4e-63
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 137 2e-32
TC222001 similar to UP|C716_NEPRA (O04164) Cytochrome P450 71A6 ... 103 4e-22
CO983154 98 2e-20
CO981879 61 7e-20
BI427153 95 2e-19
CO981347 63 5e-19
CO982898 66 1e-18
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 82 1e-15
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 81 3e-15
BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa ... 79 1e-14
BM892610 77 3e-14
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p... 72 2e-12
CO984748 71 2e-12
AI855982 69 9e-12
BU548265 homologue to GP|18000935|gb| cytochrome b {Mabuya delal... 69 1e-11
BI701169 69 1e-11
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 67 6e-11
TC233822 65 2e-10
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 241 bits (615), Expect = 1e-63
Identities = 186/651 (28%), Positives = 290/651 (43%), Gaps = 16/651 (2%)
Frame = +1
Query: 35 IATAMHTMTLAPPDSTWYMDTGASSHVASSPGNLTSYSNLSHLNQKLYVGSGQGIPIQGS 94
++ +HT A WY+D+G S H+ L + S + G G I G
Sbjct: 1636 VSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCS--TSYVTFGDGSKGKIIGM 1809
Query: 95 GDTTLPTSHKHKPLTLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTGIP 154
G H P +L+ VL + NLIS+ QL D +V F V + ++ +
Sbjct: 1810 GKLV----HDGLP-SLNKVLLVKGLTANLISISQLC-DEGFNVNFTKSECLVTNEKSEVL 1971
Query: 155 LMRCNSLGDLYPVTPS-VPFAGLAQS-------LWHSRLGH---PGSSALQSLRSNKFIT 203
+ S + Y TP ++ S +WH R GH G + + + I
Sbjct: 1972 MKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIP 2151
Query: 204 YEHLNSPTVCESCVFGKHVRLPFVS-SNNVTVMPFDILHSDLW-TSPVLSSAGHRYYVLF 261
+ +C C GK V++ + T ++LH DL V S G RY +
Sbjct: 2152 NLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVV 2331
Query: 262 LDDFTDFLWTFPLSNKSQVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAA 321
+DDF+ F W + KS+ FE+F L+ +++ +K ++ D+G EF+N+ F +C +
Sbjct: 2332 VDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTS 2511
Query: 322 HGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPR 381
G+ FS T QNG ERK RT+ R +L +P + W A+ A Y+ N +
Sbjct: 2512 EGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTL 2691
Query: 382 KSLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGY 441
+ + + ++ R PS H +FG CY L K+ P+S +FLGY + R Y
Sbjct: 2692 RRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAY 2871
Query: 442 KCFDLSHRKIIISRHVIFDETRFPFATMPTPPPSTYDCFSDPIHPSIIHQWTSPDPSPTS 501
+ F+ R ++ S +V+ D+ P D D TS D +
Sbjct: 2872 RVFNSRTRTVMESINVVVDD---------LSPARKKDVEED--------VRTSGD----N 2988
Query: 502 VVPPAVTPSQLPTTSTSSSASPPSSPSPPSPP--QPVPPIRTMATRSMRGIYKPRKLFNL 559
V A + + +++ S + P S Q + P + RG+ + +
Sbjct: 2989 VADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRSR--EV 3162
Query: 560 SVTIDDPTISPL-PKNPKLALSDPNWKSAMQSEFDALIRNKTWDLVPRPSDVNIIRCMWI 618
+ + +S + PKN K AL+D W +AMQ E + RN+ W+LVPRP N+I WI
Sbjct: 3163 EIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWI 3342
Query: 619 FHHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLTIA 669
F +KT G R KARLV G +QI GVD DETF+PV + +IR +L +A
Sbjct: 3343 FKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVA 3495
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 239 bits (611), Expect = 4e-63
Identities = 186/654 (28%), Positives = 283/654 (42%), Gaps = 19/654 (2%)
Frame = +1
Query: 35 IATAMHTMTLAPPDSTWYMDTGASSHVASSPGNLTSYSNLSHLNQKLYVGSGQGIPIQGS 94
++ +HT A WY+D+G S H+ L + S + G G I G
Sbjct: 1639 VSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCS--TSYVTFGDGSKGKITGM 1812
Query: 95 GDTTLPTSHKHKPLTLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTGIP 154
G H P +L+ VL + NLIS+ QL D +V F V + ++ +
Sbjct: 1813 GKLV----HDGLP-SLNKVLLVKGLTANLISISQLC-DEGFNVNFTKSECLVTNEKSEVL 1974
Query: 155 LMRCNSLGDLYPVTPSVPFAGLA--------QSLWHSRLGH---PGSSALQSLRSNKFIT 203
+ S + Y TP +WH R GH G + + + I
Sbjct: 1975 MKGSRSKDNCYLWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIP 2154
Query: 204 YEHLNSPTVCESCVFGKHVRLPFVS-SNNVTVMPFDILHSDLW-TSPVLSSAGHRYYVLF 261
+ +C C GK V++ + T ++LH DL V S G RY +
Sbjct: 2155 NLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVV 2334
Query: 262 LDDFTDFLWTFPLSNKSQVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAA 321
+DDF+ F W + KS FE+F L+ +++ +K ++ D+G EF+N+ F +C +
Sbjct: 2335 VDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTS 2514
Query: 322 HGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPR 381
G+ FS T QNG ERK RT+ R +L +P + W A+ A Y+ N +
Sbjct: 2515 EGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTL 2694
Query: 382 KSLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGY 441
+ + + ++ R P+ H +FG CY L K+ P+S +FLGY + R Y
Sbjct: 2695 RRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAY 2874
Query: 442 KCFDLSHRKIIISRHVIFDETRFPFATMPTPPPSTYDCFSDPIHPSIIHQWTSPDPSPTS 501
+ F+ R ++ S +V+ D+ P D D TS
Sbjct: 2875 RVFNSRTRTVMESINVVVDD---------LTPARKKDVEED---------------VRTS 2982
Query: 502 VVPPAVTPSQLPTTSTSSSAS-PPSSPSPPSPP----QPVPPIRTMATRSMRGIYKPRKL 556
A T S SA+ P+ P P Q + P + RG+ +
Sbjct: 2983 GDNVADTAKSAENAENSDSATDEPNINQPDKRPSIRIQKMHPKELIIGDPNRGVTTRSR- 3159
Query: 557 FNLSVTIDDPTISPL-PKNPKLALSDPNWKSAMQSEFDALIRNKTWDLVPRPSDVNIIRC 615
+ + + +S + PKN K AL+D W +AMQ E + RN+ W+LVPRP N+I
Sbjct: 3160 -EIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGT 3336
Query: 616 MWIFHHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLTIA 669
WIF +KT G R KARLV G +QI GVD DETF+PV + +IR +L +A
Sbjct: 3337 KWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVA 3498
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 137 bits (346), Expect = 2e-32
Identities = 92/282 (32%), Positives = 142/282 (49%), Gaps = 3/282 (1%)
Frame = +2
Query: 83 VGSGQGIPIQGSGDTTLPTSHKHKPLTLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPY 142
+ G + G G + PTS L+L+ V+ N+ S+ QLT N SV FD
Sbjct: 26 LADGSRVVATGIGHVS-PTSS----LSLNSVVFILGCPFNITSLSQLTRFRNCSVTFDAN 190
Query: 143 GFSVHDFQTGIPLMRCNSLGDLYPVTPSVPF---AGLAQSLWHSRLGHPGSSALQSLRSN 199
F + + TG + LY + P++ + A + L H RLGHP S L+ + +
Sbjct: 191 SFVIQECGTGWTIGVGIESHGLYYLKPNLSWVCSAVTSPKLLHERLGHPHLSKLKIMVPS 370
Query: 200 KFITYEHLNSPTVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLWTSPVLSSAGHRYYV 259
E + CESC GKHVR + PF ++H D+W +SS +RY+V
Sbjct: 371 ----LEKIKD-LFCESCQLGKHVRSSXRHVESRVDSPFLVIHXDIWGPNRVSSMSYRYFV 535
Query: 260 LFLDDFTDFLWTFPLSNKSQVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYC 319
F+D+F+ F + +S++ TS+ ++I+T F +K L+ DN E+ ++ +
Sbjct: 536 TFIDEFSQCTRVFLMKERSEILSFLTSV-NKIKTQFGKTIKILRSDNAKEYFSSVISPFX 712
Query: 320 AAHGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVP 361
+A G++ +FSCPHT QN AERK R + RTLL HA+ P
Sbjct: 713 SAQGILHQFSCPHTPQQNDIAERKNRHLVETARTLLLHANEP 838
>TC222001 similar to UP|C716_NEPRA (O04164) Cytochrome P450 71A6 (Fragment)
, partial (21%)
Length = 912
Score = 103 bits (257), Expect = 4e-22
Identities = 46/102 (45%), Positives = 65/102 (63%)
Frame = -2
Query: 360 VPPSFWHHALQMATYLLNIIPRKSLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSTTI 419
+PP+FW++AL A YL+N IP L N SP + L+ P +HLR+FGCLCY
Sbjct: 911 MPPNFWNYALLHAAYLINCIPTPFLQNTSPYERLHGHIPDISHLRIFGCLCYASTIKANR 732
Query: 420 NKLQPRSSPCVFLGYPLHHRGYKCFDLSHRKIIISRHVIFDE 461
KL+PR+ PC+F+G+ + +GY +DL II SR+V+F E
Sbjct: 731 KKLEPRAHPCIFIGFKPNTKGYMLYDLHSHNIITSRNVVFYE 606
>CO983154
Length = 568
Score = 98.2 bits (243), Expect = 2e-20
Identities = 68/211 (32%), Positives = 98/211 (46%), Gaps = 1/211 (0%)
Frame = +3
Query: 332 HTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNLSPTQ 391
HT QNG AERK R + R+L+ + +VP W A+ + +L+N +P SL N P
Sbjct: 3 HTPQQNGIAERKNRHLLETARSLMLNLNVPIHHWGDAVLTSCFLINRMPSSSLENQIPHS 182
Query: 392 LLYRRDPSY-THLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLSHRK 450
L++ DP + +VFGC C+ S ++KL RS CVFLGY +GYKC+ + R+
Sbjct: 183 LVFPHDPLFHVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYKCYSPTMRR 362
Query: 451 IIISRHVIFDETRFPFATMPTPPPSTYDCFSDPIHPSIIHQWTSPDPSPTSVVPPAVTPS 510
+S V F E PF PS+ H + + P PS
Sbjct: 363 YYMSADVTFFEDT-PF-----------------FSPSVDHSSSLQEVLP--------IPS 464
Query: 511 QLPTTSTSSSASPPSSPSPPSPPQPVPPIRT 541
P ++ + S S SP S +PP+ T
Sbjct: 465 PYPLXNSGQNVSIVPSSSPNSLEVILPPLTT 557
>CO981879
Length = 576
Score = 61.2 bits (147), Expect(2) = 7e-20
Identities = 33/95 (34%), Positives = 45/95 (46%)
Frame = -1
Query: 283 MFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSCPHTSSQNGKAER 342
+F + I+T F +K + DNG E+ N +G+I + SC T QNG AER
Sbjct: 570 IFKTFFQMIQTQFQVKIKVFRSDNGREYFNKHLSKXXLENGIIHQSSCVDTPQQNGVAER 391
Query: 343 KIRTINNMIRTLLAHASVPPSFWHHALQMATYLLN 377
K R + + R LL P W A+ TYL N
Sbjct: 390 KNRHLXEVARALLFQNKAPKYXWGEAILTGTYLKN 286
Score = 55.5 bits (132), Expect(2) = 7e-20
Identities = 25/64 (39%), Positives = 39/64 (60%)
Frame = -2
Query: 403 LRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLSHRKIIISRHVIFDET 462
L++FGC + + KL+PR+ CVF+GY + +GYKCFD + +K ++ V F E
Sbjct: 194 LKIFGCTVFVHIHEPNQGKLEPRAKKCVFVGYAPNQKGYKCFDPTSKKTFVTIDVTFFE- 18
Query: 463 RFPF 466
+ PF
Sbjct: 17 KTPF 6
>BI427153
Length = 422
Score = 94.7 bits (234), Expect = 2e-19
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 1/134 (0%)
Frame = +1
Query: 329 SCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNLS 388
+CPHT QNG AERK + R+L+ +++VP W A+ A +L+N +P SL N
Sbjct: 10 TCPHTPQQNGIAERKNHHLLETARSLMLNSNVPTHHWGDAVLTACFLINRMPSSSLENQI 189
Query: 389 PTQLLYRRD-PSYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLS 447
P +++ D Y +VFGC C+ S ++KL RS CVFLGY +GY C+ +
Sbjct: 190 PHSIVFPNDLLFYVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYTCYFPN 369
Query: 448 HRKIIISRHVIFDE 461
R+ +S +V F E
Sbjct: 370 MRRYYMSANVTFFE 411
>CO981347
Length = 624
Score = 62.8 bits (151), Expect(3) = 5e-19
Identities = 34/93 (36%), Positives = 48/93 (51%)
Frame = +2
Query: 299 VKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHA 358
+K L+ DNG EF F+ +C G+ PHT QNG AER TI +R +L A
Sbjct: 161 LKVLRTDNGLEFVLEQFNEFCRKIGIKRHKIVPHTP*QNGLAERMNMTILERVRCMLLSA 340
Query: 359 SVPPSFWHHALQMATYLLNIIPRKSLSNLSPTQ 391
+P +FW A +YL+N P +L +P +
Sbjct: 341 RLPKTFWGEAANTTSYLINRCPSSTLGFKTPME 439
Score = 38.5 bits (88), Expect(3) = 5e-19
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3
Query: 396 RDPSYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDL 446
+ P+Y+ L+VFG L + V KL R+ CVF+GYP + YK + L
Sbjct: 453 KPPNYSGLKVFGSLAFDHVKQ---GKLDARAVKCVFIGYPKGVKRYKLWKL 596
Score = 32.3 bits (72), Expect(3) = 5e-19
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 247 SPVLSSAGHRYYVLFLDDFTDFLWTFPLSNKSQVFE 282
S V + G Y++ +DDF+ +W + L NKS+ F+
Sbjct: 6 SRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKSESFK 113
>CO982898
Length = 816
Score = 66.2 bits (160), Expect(2) = 1e-18
Identities = 37/109 (33%), Positives = 56/109 (50%)
Frame = -1
Query: 380 PRKSLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHR 439
P S++ P L+ + Y+ RVFGC C+PL+ I K +S C+FLG H+
Sbjct: 597 PTVSINFAVPYTQLFNQMLDYSFPRVFGCACFPLIRPYNIQKFNFKSHECIFLGNYTSHK 418
Query: 440 GYKCFDLSHRKIIISRHVIFDETRFPFATMPTPPPSTYDCFSDPIHPSI 488
YKC L+ ++S+ VIF+E FP+ + P ST PI ++
Sbjct: 417 NYKC--LAPAGKLVSKDVIFNEI*FPYKELFLPDSSTCIPVPQPIPATV 277
Score = 46.2 bits (108), Expect(2) = 1e-18
Identities = 25/58 (43%), Positives = 33/58 (56%)
Frame = -3
Query: 323 GLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIP 380
G+I + PHT QN ERK R I +LL+HAS+P FW HA +L+N +P
Sbjct: 766 GIIHKLIFPHTQYQN-VVERKQRHIVKFGLSLLSHASLPLKFWGHAFITPVFLINRLP 596
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 82.0 bits (201), Expect = 1e-15
Identities = 40/99 (40%), Positives = 55/99 (55%)
Frame = +3
Query: 571 LPKNPKLALSDPNWKSAMQSEFDALIRNKTWDLVPRPSDVNIIRCMWIFHHKTKANGCFE 630
+P + AL P W+ AM E AL N TW+LVP P + C W++ K NG +
Sbjct: 18 VPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKVD 197
Query: 631 RYKARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLTIA 669
R KARLV G +Q+ G++ +TFSPV T+R L +A
Sbjct: 198 RLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMA 314
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 80.9 bits (198), Expect = 3e-15
Identities = 40/98 (40%), Positives = 55/98 (55%)
Frame = +3
Query: 572 PKNPKLALSDPNWKSAMQSEFDALIRNKTWDLVPRPSDVNIIRCMWIFHHKTKANGCFER 631
PKN K A+ D NW MQ E + RN W LV +P + +I W+F +K +G R
Sbjct: 6 PKNIKEAIVDDNWIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIR 185
Query: 632 YKARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLTIA 669
KARLV G +Q G+D +ET++PV + IR +L A
Sbjct: 186 NKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYA 299
>BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 430
Score = 79.0 bits (193), Expect = 1e-14
Identities = 48/127 (37%), Positives = 63/127 (48%)
Frame = +1
Query: 572 PKNPKLALSDPNWKSAMQSEFDALIRNKTWDLVPRPSDVNIIRCMWIFHHKTKANGCFER 631
P K AL P W+ AMQ++FDAL+ NKT L PS I C W+F K G R
Sbjct: 34 PSTVKQALISPPWRQAMQADFDALMENKTLTLTSLPSGKAAIDCKWVFRIKENLYGTLNR 213
Query: 632 YKARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLTIALSGLGPFTS*MFRMLSSMVICM 691
Y++RLV G G D ETFSPV++ + + +G F *+ ML M +
Sbjct: 214 YRSRLVAKGFHLKFGCDYSETFSPVIEL*LFDSFCS*PSLIIGHFNK*ILIMLFYMDF*L 393
Query: 692 RQSTCIS 698
R+ T S
Sbjct: 394 RRCTWFS 414
>BM892610
Length = 421
Score = 77.4 bits (189), Expect = 3e-14
Identities = 38/96 (39%), Positives = 58/96 (59%)
Frame = -3
Query: 374 YLLNIIPRKSLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLG 433
YL+N +P SL P + + + P+Y LR FGC CYP + +KL RS C+FLG
Sbjct: 413 YLINRLPTTSLKFQVPCTV-FNKLPNYNFLRNFGCSCYPFLRPYNKHKLDFRSHECLFLG 237
Query: 434 YPLHHRGYKCFDLSHRKIIISRHVIFDETRFPFATM 469
Y H+GYKC + K+ +S+ VIF+E ++P++ +
Sbjct: 236 YSTPHKGYKCLS-PNGKLYVSKDVIFNELKYPYSDL 132
>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
polyprotein, partial (4%)
Length = 919
Score = 71.6 bits (174), Expect = 2e-12
Identities = 42/145 (28%), Positives = 69/145 (46%), Gaps = 1/145 (0%)
Frame = +1
Query: 212 VCESCVFGKHVRLPFVSSNNVTVMPF-DILHSDLWTSPVLSSAGHRYYVLFLDDFTDFLW 270
VC++C GK R F + + + I+H DL T + + + Y++ F+DDF+ +W
Sbjct: 328 VCDTCEIGKKHRESFPTGKSWRMKKLLKIVHLDLCTVEIPTHGDNNYFITFIDDFSKKMW 507
Query: 271 TFPLSNKSQVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSC 330
+ L KS+ F VK L D G E+ S+ + HG+ + +
Sbjct: 508 VYFLKQKSEACNAFKMFKAFAEKQNGCKVKALIIDKGQEY--LSYTIFFEKHGIQHQLTT 681
Query: 331 PHTSSQNGKAERKIRTINNMIRTLL 355
+T NG ERK +TI +M+R +L
Sbjct: 682 KYTPQHNGVTERKNKTIMDMVRCML 756
>CO984748
Length = 810
Score = 71.2 bits (173), Expect = 2e-12
Identities = 64/211 (30%), Positives = 90/211 (42%), Gaps = 36/211 (17%)
Frame = -2
Query: 21 PQAHAASTSPVPTDIATAMHTMTLAPPDSTWYMDTGASSHVASSPGNLTSYSNLSHLNQK 80
PQA+ A+ +P WY++ GA+ HV +SP NL + S N++
Sbjct: 614 PQAYLANANPTQQS--------------QNWYINYGATHHVTASPQNLMNEVPTSG-NEQ 480
Query: 81 LYVGSGQGIPIQGSGDTTLPTSHKHKPLTLSHVLHTPQIVKNLISVRQLTTDN-----NV 135
+++G+GQG+PI GS P + K LTL+++LH P I KNL+SV DN +
Sbjct: 479 VFLGNGQGLPITGSTVFNSPFASNVK-LTLNNLLHVPHITKNLVSVS*FAKDNVFFEFHS 303
Query: 136 SVC-----------------------FDPYGFSVHDFQTG--IPLMRCNSLGDLYPVTPS 170
S C F S F G + +SL DL +
Sbjct: 302 SHCVVKSQVDGSILLRGALSQDGLYVFSNLLNSSFKFTVGKAAANVHMSSLSDLSSHCNN 123
Query: 171 VPFAGL------AQSLWHSRLGHPGSSALQS 195
V + L SLWH+RLGHP S S
Sbjct: 122 VSTSALNTSNYSLVSLWHNRLGHPSSXXCNS 30
>AI855982
Length = 484
Score = 69.3 bits (168), Expect = 9e-12
Identities = 32/87 (36%), Positives = 50/87 (56%)
Frame = +2
Query: 572 PKNPKLALSDPNWKSAMQSEFDALIRNKTWDLVPRPSDVNIIRCMWIFHHKTKANGCFER 631
PKN K A+ D NW AMQ E + RN W LV +P + +I W+F +K +
Sbjct: 101 PKNIKEAIVDDNWIIAMQEELNQFERNNVWKLVEKPDNYPVI*TKWVFRNKLDEHRIIII 280
Query: 632 YKARLVGDGRSQIAGVDCDETFSPVVK 658
+KARLV +G +Q+ G+D + T++ + +
Sbjct: 281 HKARLVAEGYNQVDGLDYEHTYASIAR 361
>BU548265 homologue to GP|18000935|gb| cytochrome b {Mabuya delalandii},
partial (5%)
Length = 667
Score = 68.6 bits (166), Expect = 1e-11
Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 1/196 (0%)
Frame = -3
Query: 41 TMTLAPPDSTWYMDTGASSHVASSPGNLTSYSNLSHLNQKLYVGSGQGIPIQGSGDTTLP 100
T + A P +WY D+GAS HV + N+ + Q + +G+GQG+ I SG +T
Sbjct: 647 TSSAATPSQSWYPDSGASHHVTNMSQNIQQVAPFEEPIQ-IIIGNGQGLNINSSGLSTFS 471
Query: 101 TS-HKHKPLTLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTGIPLMRCN 159
+ + L LS++L P I KNLI V Q DNNV F Y T + L+
Sbjct: 470 SPINPQFSLVLSNLLFVPTITKNLIRVSQFCKDNNVYFEFHSYVCLFKS*DTKLVLLEGF 291
Query: 160 SLGDLYPVTPSVPFAGLAQSLWHSRLGHPGSSALQSLRSNKFITYEHLNSPTVCESCVFG 219
D +P + FA + QS + + + +S SN + + T C +
Sbjct: 290 VGSDGLYQSPQL-FASMPQSKSYLK-------SFRSSLSNNIVVKTSIVKTTNCST---- 147
Query: 220 KHVRLPFVSSNNVTVM 235
+ FVS+NN V+
Sbjct: 146 ---KFLFVSANNTVVV 108
>BI701169
Length = 407
Score = 68.6 bits (166), Expect = 1e-11
Identities = 35/98 (35%), Positives = 50/98 (50%)
Frame = +2
Query: 258 YVLFLDDFTDFLWTFPLSNKSQVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHA 317
+ LF+DDF+ W + +K +VFE F + +K ++ D G EF + F
Sbjct: 113 FFLFIDDFSRKTWVYFFKHKLEVFENFKKFKAIVEKESGFKIKAMRSDRGGEF*SNEFQK 292
Query: 318 YCAAHGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLL 355
YC HG+ + QNG AERK RTI NM R++L
Sbjct: 293 YCDDHGIRRPLMVLRSPQQNGVAERKNRTILNMARSML 406
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 66.6 bits (161), Expect = 6e-11
Identities = 32/80 (40%), Positives = 46/80 (57%)
Frame = -3
Query: 587 AMQSEFDALIRNKTWDLVPRPSDVNIIRCMWIFHHKTKANGCFERYKARLVGDGRSQIAG 646
AMQ E + RN W LV +P + +I W+F +K +G R KARLV G +Q G
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 647 VDCDETFSPVVKPATIRTVL 666
+D +ET++PV + IR +L
Sbjct: 278 IDYEETYAPVARLEVIRMLL 219
>TC233822
Length = 632
Score = 65.1 bits (157), Expect = 2e-10
Identities = 61/212 (28%), Positives = 92/212 (42%), Gaps = 6/212 (2%)
Frame = +2
Query: 53 MDTGASSHVASSPGNLTSYS--NLSHLNQKLYVGSGQGIPIQGSGDTTLPTSHKHKPLTL 110
+D+ AS H+ + TS S + HL + + +G + +G G ++ S L L
Sbjct: 41 IDSTASDHIFGNSSLFTSQSPPKIPHL---ITLANGTKVTSKGFGKFSIFPS-----LNL 196
Query: 111 SHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTGIPLMRCNSLGDLYPVTPS 170
+ P NL+S+ QLT N S+ FD F + + T + + LY + S
Sbjct: 197 DPIHFVPNCPFNLVSLSQLTKALNFSITFDADSFVIQERDTSWLIGVEHESRGLYYLEIS 376
Query: 171 VP---FAGLAQSLWHSRLGHPGSSALQSLRS-NKFITYEHLNSPTVCESCVFGKHVRLPF 226
FA + L H+ LGHP L+ + S NK E CESC GKHVR
Sbjct: 377 SSMSCFATPSPKLLHNHLGHPHLLKLKMVPSLNKLQVLE-------CESCQLGKHVRFFP 535
Query: 227 VSSNNVTVMPFDILHSDLWTSPVLSSAGHRYY 258
+ F + SD+W ++S G RY+
Sbjct: 536 KRTETRCSSVFSTIPSDIWDPSCVTSFGFRYF 631
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.329 0.140 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,171,672
Number of Sequences: 63676
Number of extensions: 1246296
Number of successful extensions: 36009
Number of sequences better than 10.0: 1752
Number of HSP's better than 10.0 without gapping: 15242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23924
length of query: 1082
length of database: 12,639,632
effective HSP length: 107
effective length of query: 975
effective length of database: 5,826,300
effective search space: 5680642500
effective search space used: 5680642500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0114.10