BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0113.14
(584 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233392 85 8e-17
TC231841 79 7e-15
CO979823 79 7e-15
TC210729 similar to UP|Q7QHL7 (Q7QHL7) AgCP7056 (Fragment), part... 78 1e-14
TC222857 74 1e-13
CO984521 74 2e-13
TC213061 73 4e-13
BG404993 72 7e-13
TC222789 71 2e-12
TC223713 70 3e-12
AW423846 70 3e-12
TC233777 70 3e-12
TC231922 67 2e-11
AW595917 67 2e-11
TC211809 66 4e-11
BU765000 65 8e-11
CA851073 63 3e-10
TC222557 63 3e-10
CO986021 61 1e-09
TC221865 60 2e-09
>TC233392
Length = 1145
Score = 85.1 bits (209), Expect = 8e-17
Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 4/185 (2%)
Frame = -1
Query: 219 DEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFL 278
D W + Y+ +S Y + H E E+ GA ++ W+ +IP K +F
Sbjct: 656 DTWVWKHEPNELYSTRSAYKLLQGHLEGEDQDGAL-----QDLWK----LKIPAKASIFA 504
Query: 279 WKIMHEALPTKVNLRRRHCVSETS-CPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPD 337
W+++ + LPTK NL RR V E S CP C EDA+H+FL C +RP+W+ S +
Sbjct: 503 WRLIRDRLPTKSNLHRRQVVLEDSLCPFCRIREEDASHIFLECNKIRPLWWESQTWVR-- 330
Query: 338 PSILSLPIWLEAKLSQLSNLESGSEQLISYLGF---LLWGVWKMRNNGTFRGERPNPVLC 394
S+ PI Q + GS++ + + L W +WK RN F+ + N +
Sbjct: 329 -SLGVSPINKRQHFLQHVHGTPGSKRYNRWKTWWIALTWSLWKHRNQVIFQNAQFNGIKL 153
Query: 395 LNLAV 399
L AV
Sbjct: 152 LEDAV 138
>TC231841
Length = 791
Score = 78.6 bits (192), Expect = 7e-15
Identities = 53/178 (29%), Positives = 82/178 (45%), Gaps = 8/178 (4%)
Frame = +3
Query: 219 DEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFL 278
D+ W GQYT KS Y E+ G +E W+ ++P KI +F
Sbjct: 63 DQWVWKADPSGQYTAKSAYGVLWGEMFEEQQDGVF-----EELWK----LKLPSKITIFA 215
Query: 279 WKIMHEALPTKVNLRRRHC-VSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPD 337
W+++ + LPT+ NLRR+ V + CP C + E AAH+F HC + PVW+ S +
Sbjct: 216 WRLIRDRLPTRSNLRRKQIEVDDPRCPFCRSAEESAAHLFFHCSRIAPVWWESLSWVNLL 395
Query: 338 PSILSLPIWLEAKLSQLSNLESG--SEQLISYLGFLLWGVWKMRN-----NGTFRGER 388
+ P + L + + +G + + + L W +WK RN NGTF +
Sbjct: 396 GVFPNHP--RQHFLQHIYGVTAGMRASRWKWWWLALTWTIWKQRNNMIFSNGTFNANK 563
>CO979823
Length = 853
Score = 78.6 bits (192), Expect = 7e-15
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 12/211 (5%)
Frame = -2
Query: 190 WSISKITSVLSLPD--LGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGY--IQARSHKE 245
W S +++ D LG + Q I + ED+ W G Y+ KSGY + +E
Sbjct: 792 WRRPXXDSEIAMADSFLGEITQQQIH-PQREDKWLWKPEPGGHYSTKSGYHVLWGELTEE 616
Query: 246 LEESRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRH-CVSETSCP 304
++++ A E W+ +IP K VF W+++ + LPTK NLRRR V + CP
Sbjct: 615 IQDADFA-------EIWK----LKIPTKAAVFAWRLVRDRLPTKSNLRRRQVMVQDMVCP 469
Query: 305 ICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDPSILSLPIWLEAKLSQLSNLESG--SE 362
+C E AAH+F +C P+W+ S + ++ P + L +++ G S+
Sbjct: 468 LCNNIEEGAAHLFFNCTKTLPLWWESMSWVNLKTAMPQTP--RQHFLQYGTDIADGLKSK 295
Query: 363 QLISYLGFLLWGVWKMRN-----NGTFRGER 388
+ + L W +W+ RN N TF G +
Sbjct: 294 RWKCWWIALTWTIWQHRNKVVFQNATFHGNK 202
>TC210729 similar to UP|Q7QHL7 (Q7QHL7) AgCP7056 (Fragment), partial (5%)
Length = 727
Score = 78.2 bits (191), Expect = 1e-14
Identities = 41/142 (28%), Positives = 78/142 (54%), Gaps = 6/142 (4%)
Frame = +2
Query: 249 SRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHC-VSETSCPICE 307
+R ++ ++C+ +*S ++P+KI +F+W+++ + LPT+ L+RR V++ SCP C
Sbjct: 8 TRPGAAALTQEDCFVKL*SIKVPNKIAIFVWRLIRDRLPTRHKLQRRQVQVADMSCPFCR 187
Query: 308 APREDAAHVFLHCPWLRPVWFG--SFFQLAPDPSILSLPIWLEAKLSQLSNLESG---SE 362
E+A H+F HC ++P+W+ S+ L + P+ + +Q L++ S
Sbjct: 188 VKEENAGHLFFHCTKIQPLWWEAMSWINLKG-----AAPLTPKMNFNQHMGLQADGVRSN 352
Query: 363 QLISYLGFLLWGVWKMRNNGTF 384
+ + L W +WK RN+ F
Sbjct: 353 RWQCWWMALTWSIWKTRNSIVF 418
>TC222857
Length = 657
Score = 74.3 bits (181), Expect = 1e-13
Identities = 40/138 (28%), Positives = 71/138 (50%), Gaps = 9/138 (6%)
Frame = -3
Query: 260 ECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHC-VSETSCPICEAPREDAAHVFL 318
+C++ + +IP K +F W+++ + LPTK NLR R +S+ +CP C E A+H+F+
Sbjct: 628 DCFKDLWKIKIPSKFLMFAWRLLWDRLPTKANLRARQVQISDLTCPFCRRVEETASHMFI 449
Query: 319 HCPWLRPVWFGSFFQLAPDPSILSLPIWLEAKLSQLSNLESG---SEQLISYLGFLLWGV 375
HC +P+W+ + + LP + Q S+L+ S + + + W +
Sbjct: 448 HCIKTQPIWWETMNWINMQG---PLPWSITDHFMQFSSLKEAGIRSRRWQWWWMAVTWSI 278
Query: 376 WKMRN-----NGTFRGER 388
W++RN N TF G +
Sbjct: 277 WQLRNSIVFSNATFDGNK 224
>CO984521
Length = 716
Score = 73.6 bits (179), Expect = 2e-13
Identities = 39/116 (33%), Positives = 62/116 (52%), Gaps = 1/116 (0%)
Frame = -2
Query: 216 EGEDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIK 275
E D+ W G Y+ KS Y +A H + E + KE W+ R+P K+
Sbjct: 655 ELSDQWKWAAEPSGCYSTKSAY-KALHHVTVGEEQDGKF----KELWK----LRVPLKVA 503
Query: 276 VFLWKIMHEALPTKVNLRRRHC-VSETSCPICEAPREDAAHVFLHCPWLRPVWFGS 330
+F W+++ + LPTK NLR++ + E CP+C + E A+H+F HC + P+W+ S
Sbjct: 502 IFAWRLIQDKLPTKANLRKKRVELQEYLCPLCRSVEETASHLFFHCSKVSPLWWES 335
>TC213061
Length = 823
Score = 72.8 bits (177), Expect = 4e-13
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Frame = +2
Query: 218 EDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVF 277
ED+ W G Y +S Y R EE KE W+ ++P K+ +F
Sbjct: 125 EDQWVWAAESSGSYLARSAYRVIREGIPEEEQ-----DREFKELWK----LKVPMKVTMF 277
Query: 278 LWKIMHEALPTKVNLRRRHC-VSETSCPICEAPREDAAHVFLHCPWLRPVWFGS 330
W+++ + LPT+ NLRR+ + E CP+C + E A+H+F HC + P+W+ S
Sbjct: 278 AWRLLKDILPTRDNLRRKRVELHEYVCPLCRSMDESASHLFFHCSKILPIWWES 439
>BG404993
Length = 412
Score = 72.0 bits (175), Expect = 7e-13
Identities = 40/113 (35%), Positives = 58/113 (50%), Gaps = 1/113 (0%)
Frame = -3
Query: 219 DEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFL 278
D W G Y+ K+ Y + E RG + W+ +IP K VF
Sbjct: 332 DSWTWKADPSGNYSTKTAYELLQ-----EAIRGDNEDGIFVQLWK----LKIPPKAPVFT 180
Query: 279 WKIMHEALPTKVNLRRRHC-VSETSCPICEAPREDAAHVFLHCPWLRPVWFGS 330
W+++++ LPTKVNLRRR +S++ CP+C EDAAH+F +C P W+ S
Sbjct: 179 WRLINDRLPTKVNLRRRQVEISDSLCPLCNNSEEDAAHLFFNCNKTLPFWWES 21
>TC222789
Length = 954
Score = 70.9 bits (172), Expect = 2e-12
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +2
Query: 250 RGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHC-VSETSCPICEA 308
RGA + + + ++P K +VF W+++ + LPTKVNL RR V + SCP C
Sbjct: 317 RGAGVEGIKDKAFEKLWKLKVPIKYEVFAWRLLRDRLPTKVNLHRRQIQVMDRSCPFCRN 496
Query: 309 PREDAAHVFLHCPWLRPVWFGS 330
EDA H+F HC + P+W+ S
Sbjct: 497 VEEDAGHLFFHCSKIIPIWWES 562
>TC223713
Length = 420
Score = 70.1 bits (170), Expect = 3e-12
Identities = 37/107 (34%), Positives = 53/107 (48%), Gaps = 1/107 (0%)
Frame = +1
Query: 223 WPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLWKIM 282
W GQYT ++ Y R E G +E +* ++P K VF W+++
Sbjct: 10 WEADQSGQYTAQTAYNLMR-----EVEVGGIQDRAFEE----L*KLKVPIKFAVFAWRLL 162
Query: 283 HEALPTKVNLRRRHC-VSETSCPICEAPREDAAHVFLHCPWLRPVWF 328
+ LPTK NL RR V+ SCP C E+A H+F HC + P+W+
Sbjct: 163 RDRLPTKANLHRRQIEVTNRSCPFCSNMEEEAGHLFFHCSKIIPIWW 303
>AW423846
Length = 385
Score = 70.1 bits (170), Expect = 3e-12
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Frame = +3
Query: 269 RIPHKIKVFLWKIMHEALPTKVNLRRRHC-VSETSCPICEAPREDAAHVFLHCPWLRPVW 327
++P K F+W+++ + LPTK NL RRH + + +CP C+ EDAAH+F C + P+W
Sbjct: 9 KVPSKAAFFVWRLIRDRLPTKTNLHRRHVEIHDLTCPFCKNKEEDAAHLFFTCSKIMPLW 188
Query: 328 FGSFFQLAPDPSILSLPIWLEAKLSQLSNLESGSEQLISYLGFLLWGVWKMRNNGTFRGE 387
+ S P + + ++ ++ + L W +W+ RN E
Sbjct: 189 WASLSWTNTTAPFPENPHMHFLQQVLRNGKDTSYQKWQCWWTSLTWSIWQHRNKIVXEEE 368
Query: 388 RPN 390
R N
Sbjct: 369 RFN 377
>TC233777
Length = 503
Score = 69.7 bits (169), Expect = 3e-12
Identities = 27/63 (42%), Positives = 41/63 (64%), Gaps = 1/63 (1%)
Frame = +2
Query: 269 RIPHKIKVFLWKIMHEALPTKVNLRRRHC-VSETSCPICEAPREDAAHVFLHCPWLRPVW 327
++P KI VF W+++ LPT+ NL RR + + SCP C ED AH+F+HC ++P+W
Sbjct: 20 KVPSKISVFAWRLLRNRLPTRTNLHRRQLQIIDMSCPFCRCSEEDEAHLFIHCSKIQPLW 199
Query: 328 FGS 330
+ S
Sbjct: 200 WES 208
>TC231922
Length = 803
Score = 67.0 bits (162), Expect = 2e-11
Identities = 34/116 (29%), Positives = 56/116 (47%), Gaps = 1/116 (0%)
Frame = -3
Query: 216 EGEDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIK 275
+ D +FW G Y+ KS Y + S PS+ ++ + +IP +
Sbjct: 453 QAHDSMFWKADSSGVYSTKSAYRLLMP---------SISPAPSRRIFQILWHLKIPPRAA 301
Query: 276 VFLWKIMHEALPTKVNLRRRHC-VSETSCPICEAPREDAAHVFLHCPWLRPVWFGS 330
VF W++ + LPT+ NL RR + + CP+C E+A H+F HC + +W+ S
Sbjct: 300 VFSWRLFLDRLPTRGNLSRRSIPIQDIMCPLCGCQHEEAGHLFFHCKMTKGLWWES 133
>AW595917
Length = 404
Score = 67.0 bits (162), Expect = 2e-11
Identities = 27/62 (43%), Positives = 41/62 (65%)
Frame = +1
Query: 269 RIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHVFLHCPWLRPVWF 328
+IP K VF W+++ + LPTK NLRR+ +S++ CP+C +EDA H+F +C P W+
Sbjct: 19 KIPPKAAVFTWRLIKDQLPTKANLRRQMEISDSLCPLCNNSKEDATHLFFNCSKTLPFWW 198
Query: 329 GS 330
S
Sbjct: 199 ES 204
>TC211809
Length = 895
Score = 66.2 bits (160), Expect = 4e-11
Identities = 45/161 (27%), Positives = 76/161 (46%), Gaps = 4/161 (2%)
Frame = +2
Query: 228 YGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALP 287
+G+ T+ Y +++ L E AT P + + + +IP K VF W+++ + LP
Sbjct: 179 FGRPTLFGNYSTKSAYRLLME---ATGEFPVDRTYVDLWNLKIPSKAIVFAWRLIKDRLP 349
Query: 288 TKVNLRRRHC-VSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDPSILSLPIW 346
T NLR R ++++ CP+C + EDAAH+F HC +W+ + + S+ + P
Sbjct: 350 TWTNLRVRQVELNDSRCPLCNSSEEDAAHLFFHCTKTEXLWWETQSWV---NSLGAFPHN 520
Query: 347 LEAKLSQLSNLESGSEQLISYLGF---LLWGVWKMRNNGTF 384
+ Q N +G + L W +WK RN F
Sbjct: 521 PKDHFLQHDNRSAGGVXARRWKCLWVALTWVIWKHRNGVVF 643
>BU765000
Length = 425
Score = 65.1 bits (157), Expect = 8e-11
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +2
Query: 259 KECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHC-VSETSCPICEAPREDAAHVF 317
KE W+ ++P K+ VF W+++ + LPT+ NLRR+ + E CP C E A H+F
Sbjct: 53 KELWK----LKVPPKVAVFAWRLLKDRLPTRDNLRRKQVELHEYLCPFCRTMEESACHLF 220
Query: 318 LHCPWLRPVWFGS 330
HC + PVW+ S
Sbjct: 221 FHCRKVLPVWWES 259
>CA851073
Length = 633
Score = 63.2 bits (152), Expect = 3e-10
Identities = 51/217 (23%), Positives = 94/217 (42%), Gaps = 5/217 (2%)
Frame = +1
Query: 218 EDEIFWPYRDYGQYTIKSGY-IQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKV 276
+D + W G Y+ KS Y I ++ + E+ +++I +IP + V
Sbjct: 25 QDTMVWKADPCGVYSTKSAYRILMTCNRHVSEAN----------IFKTIWKLKIPPRAAV 174
Query: 277 FLWKIMHEALPTKVNLRRRHC-VSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLA 335
F W+++ + LPT+ NL RR+ + E CP+C +E+A H+F +C R +W+ S +
Sbjct: 175 FSWRLIKDRLPTRHNLLRRNVSIQENECPLCGYEQEEADHLFFNCKMTRGLWWES---MR 345
Query: 336 PDPSILSLPIWLEAKLSQLSNLESGSEQLISYLGF---LLWGVWKMRNNGTFRGERPNPV 392
+ + L + + Q + + G+ L +WK RN F+G + P
Sbjct: 346 WNQIVGPLSVSPASHFVQFCDGFGAGRNHTRWCGWWIALTSSIWKHRNLLIFQGNQFEPS 525
Query: 393 LCLNLAVEASKEFLLETTTEFLPIYGGHVNRGIRHWT 429
++ A L +L + + N HW+
Sbjct: 526 KVMDDA--------LFLAWSWLKVREKNFNTPFNHWS 612
>TC222557
Length = 1002
Score = 63.2 bits (152), Expect = 3e-10
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Frame = +1
Query: 269 RIPHKIKVFLWKIMHEALPTKVNL-RRRHCVSETSCPICEAPREDAAHVFLHCPWLRPVW 327
+IP K F W+++ E +PTK NL RRR ++ CP C E+A+H+F +CP + P+W
Sbjct: 451 KIPLKATTFAWRLIKERIPTKGNLWRRRVQLNNLMCPFCNRQEEEASHLFFNCPRILPLW 630
Query: 328 FGSFFQLAPDPSILSLPIWLEAKLSQLSNLESGSEQLISYLGFLLWGVWKMRNNGTF 384
+ S +P + + +S + + + L W +W+ RN F
Sbjct: 631 WESLAWTKTVGVFSPIPRQNYMQHTLISKGKHLQARWKCWWVALTWSIWRHRNRIVF 801
>CO986021
Length = 900
Score = 61.2 bits (147), Expect = 1e-09
Identities = 42/170 (24%), Positives = 72/170 (41%), Gaps = 1/170 (0%)
Frame = -1
Query: 218 EDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVF 277
+D + W G Y+ KS Y L +R S K W+ +IP + ++F
Sbjct: 786 QDSMLWKADPTGIYSTKSAY-----RLLLPNNRPGQHSSNFKILWK----LKIPPRAELF 634
Query: 278 LWKIMHEALPTKVNLRRRH-CVSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAP 336
W++ + L + NL RRH + + CP+C +E+A H+F HC +W+ S
Sbjct: 633 SWRLFRDRLSIRANLLRRHVALQDIMCPLCGNHQEEAGHLFFHCRMTIGLWWESMNWTRT 454
Query: 337 DPSILSLPIWLEAKLSQLSNLESGSEQLISYLGFLLWGVWKMRNNGTFRG 386
+ L P + S + + + L +W+ RN+ F+G
Sbjct: 453 LGAFLDDPAAHFIQFSDGFGAQRNHNRRCLWWIALTSTIWQHRNSLLFKG 304
>TC221865
Length = 1045
Score = 60.5 bits (145), Expect = 2e-09
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = -3
Query: 223 WPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLWKIM 282
W G Y+ +S Y H E+ A + +E W+ +IP K +F +++
Sbjct: 656 WKSEPNGHYSTRSAY-----HLMQHEAAKANTDPAFEEIWK----LKIPAKAAIFA*RLV 504
Query: 283 HEALPTKVNLRRRHC-VSETSCPICEAPREDAAHVFLHCPWLRPVWFGS 330
+ LPTK NLRRR ++ T C C E+A+H+F C +PVW+ S
Sbjct: 503 KDRLPTKNNLRRRQVQLNGTLCLFCRNYEEEASHLFFSCTKTQPVWWES 357
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.138 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,012,619
Number of Sequences: 63676
Number of extensions: 552769
Number of successful extensions: 3926
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 3833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3877
length of query: 584
length of database: 12,639,632
effective HSP length: 102
effective length of query: 482
effective length of database: 6,144,680
effective search space: 2961735760
effective search space used: 2961735760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0113.14