BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0112.11
(1331 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 719 0.0
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 719 0.0
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 184 2e-46
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 169 6e-42
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p... 161 2e-39
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 132 4e-37
TC232995 152 9e-37
BI321712 145 1e-34
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 141 2e-33
BG508993 140 3e-33
TC213445 91 5e-33
BU549979 138 2e-32
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 134 3e-31
BI784757 129 7e-30
AI959950 126 6e-29
AW185460 123 5e-28
BI701169 123 6e-28
CO981347 102 7e-28
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 120 5e-27
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 119 7e-27
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 719 bits (1857), Expect = 0.0
Identities = 431/1220 (35%), Positives = 668/1220 (54%), Gaps = 14/1220 (1%)
Frame = +1
Query: 126 EGETVVNYFARTLSIVNKMKIQGESIKETLIVEK-ILRSLTEKFNYVVCSIEESNDVDTI 184
+ E ++ A+ ++ ++ + E+ +E + K + L K + SI+ N +
Sbjct: 1141 KSEKILQQEAQLKKVIANLEAEKEAHEEEISELKGEVGFLNSKLENMTKSIKMLNKGSDM 1320
Query: 185 TIDQLQSSLLVQEQRMKGYREEEQALRA-TSSGKSERGRGRTGNRGRGRGRGSFNKESVE 243
+ LQ V QR G+ + T ++ G T ++ R R G+ K+S
Sbjct: 1321 LDEVLQLGKNVGNQRGLGFNHKSAGRTTMTEFVPAKNSTGATMSQHRSRHHGTQQKKSKR 1500
Query: 244 ----CYKCHKLGHFQYECPTWEESANYAELHEDHEELLLMARTETGKTSHTTLKIQGVDK 299
C+ C K GH + C + H H ++S + K+ V K
Sbjct: 1501 KKWRCHYCGKYGHIKPFC-------YHLHGHPHHGT----------QSSSSGRKMMWVPK 1629
Query: 300 KSL--LMAKTAQEGCSCPTSGKVWFLDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIM 357
+ L+ T+ ++ + W+LDSGCS HM G +E+ N++ T+ V GD S
Sbjct: 1630 HKIVSLVVHTSLRA----SAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKG 1797
Query: 358 TVKGKGDVKLQIGGLIQVFTEVYFIPELKNNLLSIGQLLERDLSITFKKKWCRIYHKDKG 417
+ G G KL GL + +V + L NL+SI QL + ++ F K C + ++
Sbjct: 1798 KITGMG--KLVHDGLPSL-NKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSE 1968
Query: 418 LIIQSRMSSNR--MFAVIATMIAPTCFSTTIKDESELWHKRYGHLGYSGLKILAQKAMVK 475
++++ S + ++ T + TC + +DE ++WH+R+GHL G+K + K V+
Sbjct: 1969 VLMKGSRSKDNCYLWTPQETSYSSTCLFSK-EDEVKIWHQRFGHLHLRGMKKIIDKGAVR 2145
Query: 476 GLPMLG-ELDKPCEECLKGKQHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYF 534
G+P L E + C EC GKQ + R L+L+H D+ GP++ +S KRY
Sbjct: 2146 GIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYA 2325
Query: 535 ITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEF 594
+DDF R TWV + EKS E FK+ L ++E + +R+D G EF + +FTEF
Sbjct: 2326 YVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEF 2505
Query: 595 CELNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNR 654
C GI + +A+ TPQQNG+ ERKNRT+ R ML K++P W EA+N + YI NR
Sbjct: 2506 CTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNR 2685
Query: 655 SPTIAVKNITPEECWSGKKPSVNFFRIFGCVAYAHVPDSQRRKLDNRSIKCIYLGSSEES 714
T E W G+KP+V F IFG Y QRRK+D +S I+LG S S
Sbjct: 2686 VTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNS 2865
Query: 715 KAYRLYDPVSKKIIINRDVVFDESSGWDWSSGAEQMEFFDEMVDTNEVSTVPILDEVEHQ 774
+AYR+++ ++ ++ + +VV D+ + + + +E V T+ + + D +
Sbjct: 2866 RAYRVFNSRTRTVMESINVVVDDLT-------PARKKDVEEDVRTSGDN---VADTAKSA 3015
Query: 775 VHSETNDTSPELEDNGEASVSASPGVAEEERERRGRRNVQQPVWMKEFVSGEDLSDEGV- 833
++E +D++ + P + + ++ R P KE + G+ + GV
Sbjct: 3016 ENAENSDSATD-----------EPNINQPDKRPSIRIQKMHP---KELIIGDP--NRGVT 3147
Query: 834 --SNFVCADAEYSFVSIHSDPMTYDEAAKSDHWRKAMDLEIQAIERNNTWQLAELPKGDK 891
S + + FVS +P EA + W AM E++ +RN W+L P+G
Sbjct: 3148 TRSREIEIVSNSCFVS-KIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTN 3324
Query: 892 SIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAV 951
IG KW++K K NE+G I ++KARLVA+GY Q +G+DF E FAPVAR ++IR +L +A +
Sbjct: 3325 VIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACI 3504
Query: 952 RGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSR 1011
+ ++Q+DVKSAFL+G ++E +V+QP+G+ VY+L KALYGL+QAPRAWY R
Sbjct: 3505 LKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYER 3684
Query: 1012 IDSYFQKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREF 1071
+ + +QG+ + D TL+VKQ L +I +YVDD+++ G ++ F M+ EF
Sbjct: 3685 LTEFLTQQGYRKGGIDKTLFVKQDAENL-MIAQIYVDDIVFGGMSNEMLRHFVQQMQSEF 3861
Query: 1072 DMSDLGKMSYFLGVEILQNSEGIFMCQSKYAKEVLERFGMKNSNPVRNPVVPGTKLNKRG 1131
+MS +G+++YFLG+++ Q + IF+ QSKYAK ++++FGM+N++ R P KL+K
Sbjct: 3862 EMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDE 4041
Query: 1132 CGSEVDATQYKQMIGSLMYLTVSRPDLMYSVSLVSRYMEKPTELHVQIVKRVMRYLNGTV 1191
G+ VD + Y+ MIGSL+YLT SRPD+ Y+V + +RY P H+ VKR+++Y+NGT
Sbjct: 4042 AGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTS 4221
Query: 1192 DMGIQYRRSGSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSSKKQAVVSLSTTE 1251
D GI Y L+ Y D+D+AG DDRKSTSG F LG+ I+W SKKQ VSLST E
Sbjct: 4222 DYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAE 4401
Query: 1252 AEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNSSTIKLSKNPVMHGRSKHINVRY 1311
AE+IAA S Q +W++++L V+ T+YCDN S I +SKNPV H R+KHI++R+
Sbjct: 4402 AEYIAAGSSCSQLVWMKQMLKEY-NVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRH 4578
Query: 1312 HFLRDLVRDGRIELVHCSTE 1331
H++RDLV D I L H TE
Sbjct: 4579 HYIRDLVDDKVITLEHVDTE 4638
Score = 97.1 bits (240), Expect = 5e-20
Identities = 80/304 (26%), Positives = 134/304 (43%), Gaps = 57/304 (18%)
Frame = +1
Query: 13 PKFDG-HYDHWALLMENLLRSKEY--WPIV-----------ADGVPALAPNANAEQIKIH 58
P DG +Y++W M L+S + W V +G P + K
Sbjct: 40 PILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEE 219
Query: 59 EEAKLKDLKAKNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRRE 118
+E L + KA N LF ++++I I +K+ W+ ++ ++G++KVK +LQ L +
Sbjct: 220 DELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATK 399
Query: 119 FEVLGMKEGETVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEES 178
FE L MKE E + ++ L I N GE + + +V KILRSL ++F+ V +IEE+
Sbjct: 400 FENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEA 579
Query: 179 NDVDTITIDQLQSSLLVQEQRMKGYREEE-QALRATSSGKSERGR--------------- 222
D+ + +D+L SL E + E++ + L S+ + E
Sbjct: 580 QDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVL 759
Query: 223 -GRTGNRGRGR----------------GRGS-FNKES---------VECYKCHKLGHFQY 255
G+ N+ R +GS + K+S ++C+ C GH +
Sbjct: 760 LGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYQKKSDEKPSHSKGIQCHGCEGYGHIKA 939
Query: 256 ECPT 259
ECPT
Sbjct: 940 ECPT 951
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 719 bits (1855), Expect = 0.0
Identities = 437/1226 (35%), Positives = 668/1226 (53%), Gaps = 20/1226 (1%)
Frame = +1
Query: 126 EGETVVNYFARTLSIVNKMKIQGESIKETLIVEK----ILRSLTEKFNYVVCSIEESNDV 181
+ E ++ A+ ++ ++ + E+ KE + K L S E + + + +D
Sbjct: 1138 KSEKILQQEAQLKKVIADLEAEKEAHKEEISELKGEVGFLNSKLENMTKSIKMLNKGSD- 1314
Query: 182 DTITIDQ-LQSSLLVQEQRMKGYREEEQALRATSSGKSERGR-GRTGNRGRGRGRGSFNK 239
T+D+ L QR G+ + + + R G T ++ R R G K
Sbjct: 1315 ---TLDEVLLLGKNAGNQRGLGFNPKSAGRTTMTEFVPAKNRTGATMSQHRSRHHGMQQK 1485
Query: 240 ESVE----CYKCHKLGHFQYECPTWEESANYAELHEDHEELLLMARTETGKTSHTTLKIQ 295
+S C+ C K GH + C + H H ++S++ K+
Sbjct: 1486 KSKRKKWRCHYCGKYGHIKPFC-------YHLHGHPHHGT----------QSSNSRKKMM 1614
Query: 296 GVDKKSL--LMAKTAQEGCSCPTSGKVWFLDSGCSNHMCGSREWFHNLDESFTTTVKLGD 353
V K L+ T+ ++ + W+LDSGCS HM G +E+ N++ T+ V GD
Sbjct: 1615 WVPKHKAVSLVVHTSLRA----SAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGD 1782
Query: 354 DSIMTVKGKGDVKLQIGGLIQVFTEVYFIPELKNNLLSIGQLLERDLSITFKKKWCRIYH 413
S + G G KL GL + +V + L NL+SI QL + ++ F K C + +
Sbjct: 1783 GSKGKIIGMG--KLVHDGLPSL-NKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTN 1953
Query: 414 KDKGLIIQSRMSSNR--MFAVIATMIAPTCFSTTIKDESELWHKRYGHLGYSGLKILAQK 471
+ ++++ S + ++ T + TC S+ +DE +WH+R+GHL G+K + K
Sbjct: 1954 EKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSK-EDEVRIWHQRFGHLHLRGMKKIIDK 2130
Query: 472 AMVKGLPMLG-ELDKPCEECLKGKQHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQ 530
V+G+P L E + C EC GKQ + R L+L+H D+ GP++ +S
Sbjct: 2131 GAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGG 2310
Query: 531 KRYFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSRE 590
KRY +DDF R TWV + EKS E FK+ L ++E + +R+D G EF +
Sbjct: 2311 KRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSR 2490
Query: 591 FTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVY 650
FTEFC GI + +A+ TPQQNG+ ERKNRT+ R ML K++P W EA+N + Y
Sbjct: 2491 FTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACY 2670
Query: 651 IQNRSPTIAVKNITPEECWSGKKPSVNFFRIFGCVAYAHVPDSQRRKLDNRSIKCIYLGS 710
I NR T E W G+KPSV F IFG Y QRRK+D +S I+LG
Sbjct: 2671 IHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGY 2850
Query: 711 SEESKAYRLYDPVSKKIIINRDVVFDESSGWDWSSGAEQMEFFDEMVDTNEVSTVPILDE 770
S S+AYR+++ ++ ++ + +VV D D S ++ +
Sbjct: 2851 STNSRAYRVFNSRTRTVMESINVVVD-----DLSPARKK--------------------D 2955
Query: 771 VEHQVHSETNDTSPELE--DNGEASVSASPGVAEEERERRGRRNVQQPVWMKEFVSGEDL 828
VE V + ++ + + +N E S SA+ + ++R +Q+ + KE + G+
Sbjct: 2956 VEEDVRTSGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQK-MHPKELIIGDP- 3129
Query: 829 SDEGV---SNFVCADAEYSFVSIHSDPMTYDEAAKSDHWRKAMDLEIQAIERNNTWQLAE 885
+ GV S V + FVS +P EA + W AM E++ +RN W+L
Sbjct: 3130 -NRGVTTRSREVEIVSNSCFVS-KIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVP 3303
Query: 886 LPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTI 945
P+G IG KW++K K NE+G I ++KARLVA+GY Q +G+DF E FAPVAR ++IR +
Sbjct: 3304 RPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLL 3483
Query: 946 LAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAP 1005
L +A + + ++Q+DVKSAFL+G ++E V+V+QP+G+ VY+L KALYGL+QAP
Sbjct: 3484 LGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAP 3663
Query: 1006 RAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKA 1065
RAWY R+ + +QG+ + D TL+VKQ L +I +YVDD+++ G ++ F
Sbjct: 3664 RAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENL-MIAQIYVDDIVFGGMSNEMLRHFVQ 3840
Query: 1066 SMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKYAKEVLERFGMKNSNPVRNPVVPGT 1125
M+ EF+MS +G+++YFLG+++ Q + IF+ QS+YAK ++++FGM+N++ R P
Sbjct: 3841 QMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHL 4020
Query: 1126 KLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLMYSVSLVSRYMEKPTELHVQIVKRVMR 1185
KL+K G+ VD + Y+ MIGSL+YLT SRPD+ Y+V + +RY P H+ VKR+++
Sbjct: 4021 KLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILK 4200
Query: 1186 YLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSSKKQAVV 1245
Y+NGT D GI Y + L+ Y D+D+AG DDRKSTSG F LG+ I+W SKKQ V
Sbjct: 4201 YVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCV 4380
Query: 1246 SLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNSSTIKLSKNPVMHGRSK 1305
SLST EAE+IAA S Q +W++++L V+ T+YCDN S I +SKNPV H R+K
Sbjct: 4381 SLSTAEAEYIAAGSSCSQLVWMKQMLKEY-NVEQDVMTLYCDNMSAINISKNPVQHSRTK 4557
Query: 1306 HINVRYHFLRDLVRDGRIELVHCSTE 1331
HI++R+H++RDLV D I L H TE
Sbjct: 4558 HIDIRHHYIRDLVDDKVITLKHVDTE 4635
Score = 97.1 bits (240), Expect = 5e-20
Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 14/209 (6%)
Frame = +1
Query: 13 PKFDG-HYDHWALLMENLLRSKEY--WPIV-----------ADGVPALAPNANAEQIKIH 58
P DG +Y++W M L+S + W V +G P + K
Sbjct: 40 PILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEE 219
Query: 59 EEAKLKDLKAKNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRRE 118
+E L + KA N LF ++++I I +K+ W+ +++ ++G++KVK +LQ L +
Sbjct: 220 DELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATK 399
Query: 119 FEVLGMKEGETVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEES 178
FE L MKE E + ++ L I N GE I + +V KILRSL ++F+ V +IEE+
Sbjct: 400 FENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEA 579
Query: 179 NDVDTITIDQLQSSLLVQEQRMKGYREEE 207
D+ + +D+L SL E + E++
Sbjct: 580 QDICNMRVDELIGSLQTFELGLSDRAEKK 666
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 184 bits (468), Expect = 2e-46
Identities = 88/199 (44%), Positives = 132/199 (66%), Gaps = 3/199 (1%)
Frame = +1
Query: 1136 VDATQYKQMIGSLMYLTVSRPDLMYSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGI 1195
VD T+++++IGSL YL SRP++ ++VSL+SR+M++P H+Q KRV+R + GT+ G+
Sbjct: 7 VDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV 186
Query: 1196 QY---RRSGSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSSKKQAVVSLSTTEA 1252
+ +SG L+ YTDSD+ D + KST GY+FM +A SSKKQ V++LST EA
Sbjct: 187 LFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEA 366
Query: 1253 EFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNSSTIKLSKNPVMHGRSKHINVRYH 1312
E++AA ACQ +W+ +L L + K + DN S I L+K+P +HGRSKHI +R+H
Sbjct: 367 EYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFH 546
Query: 1313 FLRDLVRDGRIELVHCSTE 1331
++RD V G + + +C E
Sbjct: 547 YIRDQVSKGNVTVEYCKAE 603
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 169 bits (429), Expect = 6e-42
Identities = 79/149 (53%), Positives = 108/149 (72%)
Frame = -3
Query: 867 AMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQG 926
AM E+ ERNN W+L E P+ IG KWV++ KL+E G I ++KARLVAKGY Q++G
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 927 IDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRG 986
ID+ E +APVAR + IR +LA ++ + ++Q+DVKSAFL+G I E V+V+QP G+++
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 987 AERKVYKLHKALYGLRQAPRAWYSRIDSY 1015
VYKL KALYGL+QAPRAWY RI ++
Sbjct: 98 KPTHVYKLQKALYGLKQAPRAWYERISNF 12
>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
polyprotein, partial (4%)
Length = 919
Score = 161 bits (408), Expect = 2e-39
Identities = 80/169 (47%), Positives = 114/169 (67%)
Frame = +1
Query: 467 ILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQKSTWRAERKLQLIHSDICGPIKPK 526
I+ Q+ +V LP++ LD C+ C GK+H + FP +WR ++ L+++H D+C ++
Sbjct: 271 IIFQEKIVYDLPIMNILDGVCDTCEIGKKHRESFPTGKSWRMKKLLKIVHLDLC-TVEIP 447
Query: 527 SNSQKRYFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDRGGEF 586
++ YFITFIDDF +K WVY L +KS A +FK FK AEK++G K+ L D+G E+
Sbjct: 448 THGDNNYFITFIDDFSKKMWVYFLKQKSEACNAFKMFKAFAEKQNGCKVKALIIDKGQEY 627
Query: 587 NSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKK 635
S +T F E +GI+ QLT YTPQ NGV+ERKN+TIM+MVRCML K+
Sbjct: 628 LS--YTIFFEKHGIQHQLTTKYTPQHNGVTERKNKTIMDMVRCMLKAKQ 768
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 132 bits (333), Expect(2) = 4e-37
Identities = 69/184 (37%), Positives = 108/184 (58%)
Frame = +3
Query: 1041 IIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSK 1100
+I+ +YVDD+I+ + + EF M+ F+ S G++ + LG++I+Q GIF+ Q K
Sbjct: 489 LIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEK 668
Query: 1101 YAKEVLERFGMKNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLMY 1160
Y K L+RF M + P+ P+ T ++K G+ +Y MI SL YLT SRPD+++
Sbjct: 669 YTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVF 848
Query: 1161 SVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDR 1220
V L +R+ P HV VKR++RYL GT + + +++ L+ Y D +AGD +R
Sbjct: 849 VVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVER 1028
Query: 1221 KSTS 1224
KSTS
Sbjct: 1029 KSTS 1040
Score = 42.0 bits (97), Expect(2) = 4e-37
Identities = 19/48 (39%), Positives = 27/48 (55%)
Frame = +2
Query: 993 KLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGLA 1040
K +YGL+QA RAWY R+ S+ GF R +D L+ K + L+
Sbjct: 347 KTLSCVYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRKAQKGNLS 490
>TC232995
Length = 1009
Score = 152 bits (384), Expect = 9e-37
Identities = 72/174 (41%), Positives = 112/174 (63%)
Frame = +2
Query: 976 VDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQG 1035
V+QP G+++ VYKL KALYGL+QAPRAWY R+ ++ ++ F R D TL++K+
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 1036 ENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIF 1095
N + ++V +YVDD+I+ + L EF M+ EF+MS +G++ YFLG++I Q GIF
Sbjct: 182 HNDI-LLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIF 358
Query: 1096 MCQSKYAKEVLERFGMKNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLM 1149
+ QSKY KE+++RFGM ++ + P+ L+K G +D QY+ IG ++
Sbjct: 359 INQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>BI321712
Length = 399
Score = 145 bits (366), Expect = 1e-34
Identities = 69/126 (54%), Positives = 92/126 (72%)
Frame = -3
Query: 1045 LYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKYAKE 1104
LYVDDLI+TGN + EFK M EF+M+D+G M+Y+LG+E+ Q +GIF+ Q YAKE
Sbjct: 379 LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200
Query: 1105 VLERFGMKNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLMYSVSL 1164
VL++F M ++NPV P+ G+KL+K G VD T YK +IGSL YLT +RPD++Y V +
Sbjct: 199 VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20
Query: 1165 VSRYME 1170
VSRYME
Sbjct: 19 VSRYME 2
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 141 bits (355), Expect = 2e-33
Identities = 61/126 (48%), Positives = 91/126 (71%)
Frame = -2
Query: 886 LPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTI 945
LP G +G +WVY K+ GE+++ KARLVAKGY Q GID+ + F+PVA+ T+R
Sbjct: 400 LPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVRLF 221
Query: 946 LAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAP 1005
LA+AA+ W + QLD+K+AFLHG ++E ++++QP G+ +G V KLH++LYGL+Q+P
Sbjct: 220 LAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQSP 41
Query: 1006 RAWYSR 1011
RAW+ +
Sbjct: 40 RAWFGK 23
>BG508993
Length = 374
Score = 140 bits (354), Expect = 3e-33
Identities = 66/122 (54%), Positives = 86/122 (70%)
Frame = +1
Query: 1189 GTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSSKKQAVVSLS 1248
GT+D G+ Y S + KL+ + DSD+AGDVDDRKST+G+VF +G WSSKKQ +V+L
Sbjct: 7 GTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTLF 186
Query: 1249 TTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNSSTIKLSKNPVMHGRSKHIN 1308
T EAE++AA SC C IWLRR+L L +Q + + IY DN S +L+KN V H RSKHI+
Sbjct: 187 TCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHID 366
Query: 1309 VR 1310
R
Sbjct: 367 TR 372
>TC213445
Length = 705
Score = 90.5 bits (223), Expect(2) = 5e-33
Identities = 47/97 (48%), Positives = 64/97 (65%)
Frame = +1
Query: 1219 DRKSTSGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQ 1278
DR+STS +GS ++W SKKQ V LST EAE+I+A S Q W+R+ LF G ++
Sbjct: 406 DRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYG-LK 582
Query: 1279 GKCSTIYCDNSSTIKLSKNPVMHGRSKHINVRYHFLR 1315
I CDN+S I LSKN +++ R+KHI +R+HFLR
Sbjct: 583 LDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 70.9 bits (172), Expect(2) = 5e-33
Identities = 29/68 (42%), Positives = 47/68 (68%)
Frame = +2
Query: 1144 MIGSLMYLTVSRPDLMYSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSM 1203
MI S +YL+ SRP +M+SV + RY P E H+ ++KR+MRYL G +++G+ Y ++ S
Sbjct: 197 MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376
Query: 1204 KLISYTDS 1211
L+ Y+D+
Sbjct: 377 NLVGYSDA 400
>BU549979
Length = 615
Score = 138 bits (347), Expect = 2e-32
Identities = 64/170 (37%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Frame = -1
Query: 1164 LVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRKST 1223
++ RY P H + K+VMRYL GT D + Y+++ +++I Y+DSD+AG VD R+ST
Sbjct: 615 VLGRYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRST 436
Query: 1224 SGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQ--GKC 1281
SGY+FML G ++W S KQ +++ ST E EF+ +WL+ + SL V +
Sbjct: 435 SGYIFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRP 256
Query: 1282 STIYCDNSSTIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCSTE 1331
+YCDN + + ++KN RSKHI+++Y +R+ V++ ++ + H +TE
Sbjct: 255 LKLYCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTE 106
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 134 bits (337), Expect = 3e-31
Identities = 60/128 (46%), Positives = 88/128 (67%)
Frame = +3
Query: 852 PMTYDEAAKSDHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEK 911
P T EA WR+AM E+QA+E N TW+L LP G ++G +WVY K+ G++++
Sbjct: 21 PSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKVDR 200
Query: 912 HKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKID 971
KARLVAKGY Q GI++ + F+PV T+R LA+AA+R W + QLD+K+AFLHG ++
Sbjct: 201 LKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAFLHGDLE 380
Query: 972 ETVFVDQP 979
E ++++QP
Sbjct: 381 EDIYMEQP 404
>BI784757
Length = 430
Score = 129 bits (325), Expect = 7e-30
Identities = 63/136 (46%), Positives = 89/136 (65%)
Frame = +1
Query: 470 QKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNS 529
Q+ MV GLP + + C+ CL+ KQ F Q RA+ KL++I+SD+CGP++ +S
Sbjct: 16 QREMVLGLPQIKPPSEVCDGCLQCKQSRSTFKQNVPIRAKEKLEVIYSDVCGPMQTESLG 195
Query: 530 QKRYFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSR 589
RYFI+FID+ RK WVYL+ KS E F+KFK +A+K+SG + LRT+ GGE+ S
Sbjct: 196 GNRYFISFIDELTRKVWVYLIRRKSDFFEVFEKFKNMAKKQSGSLIKILRTNGGGEYVST 375
Query: 590 EFTEFCELNGIKRQLT 605
EF EFC+ GI ++T
Sbjct: 376 EFQEFCDQQGIIHEVT 423
>AI959950
Length = 466
Score = 126 bits (317), Expect = 6e-29
Identities = 60/131 (45%), Positives = 92/131 (69%)
Frame = -1
Query: 866 KAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQ 925
KAM E+ ++NN +L +LPK K +GVKW++ KL+E G++ ++KARLVAKGY+QQ+
Sbjct: 394 KAMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQE 215
Query: 926 GIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVR 985
GID+ + FA VAR + I +L+ A ++Q+DVKSAFL+G I + V+V+QP G++
Sbjct: 214 GIDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENE 35
Query: 986 GAERKVYKLHK 996
+ V+KL+K
Sbjct: 34 TLHQHVFKLNK 2
>AW185460
Length = 411
Score = 123 bits (309), Expect = 5e-28
Identities = 56/103 (54%), Positives = 76/103 (73%)
Frame = +2
Query: 1154 SRPDLMYSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSMKLISYTDSDY 1213
+RPD+MY+ SL+SR+M+ P+++H KR++RYL GT GI Y + +L+ YTDSD+
Sbjct: 92 TRPDIMYATSLLSRFMQSPSQIHFGAGKRILRYLQGTKAFGIWYTTETNSELLGYTDSDW 271
Query: 1214 AGDVDDRKSTSGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIA 1256
AG DD KSTSGY F LGSG +W+SKKQA V+ ST EAE++A
Sbjct: 272 AGSTDDMKSTSGYAFSLGSGMFSWASKKQATVAQSTAEAEYVA 400
Score = 40.8 bits (94), Expect = 0.004
Identities = 17/27 (62%), Positives = 21/27 (76%)
Frame = +2
Query: 1007 AWYSRIDSYFQKQGFVRSDSDHTLYVK 1033
AWYSRI+ YF +GF RS S+ TLY+K
Sbjct: 2 AWYSRINQYFMDRGFRRSKSEPTLYIK 82
>BI701169
Length = 407
Score = 123 bits (308), Expect = 6e-28
Identities = 58/98 (59%), Positives = 71/98 (72%)
Frame = +2
Query: 534 FITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTE 593
F FIDDF RKTWVY K E+FKKFK + EKESG K+ +R+DRGGEF S EF +
Sbjct: 113 FFLFIDDFSRKTWVYFFKHKLEVFENFKKFKAIVEKESGFKIKAMRSDRGGEF*SNEFQK 292
Query: 594 FCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCML 631
+C+ +GI+R L +PQQNGV+ERKNRTI+NM R ML
Sbjct: 293 YCDDHGIRRPLMVLRSPQQNGVAERKNRTILNMARSML 406
Score = 36.6 bits (83), Expect = 0.075
Identities = 27/76 (35%), Positives = 38/76 (49%)
Frame = +3
Query: 500 FPQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALES 559
FP++S RA++ L+LIH+D GPIK S + +F + + F K LS L
Sbjct: 15 FPKESNLRAKKLLELIHTD-GGPIKTSSLDKSNHFFSSLMIFQEKHGCIFLSIN*RCLRI 191
Query: 560 FKKFKLLAEKESGEKL 575
K K L K+ KL
Sbjct: 192 SKSSKPLLRKKVVLKL 239
>CO981347
Length = 624
Score = 102 bits (254), Expect(2) = 7e-28
Identities = 55/124 (44%), Positives = 72/124 (57%)
Frame = +2
Query: 560 FKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERK 619
F++ L + G KL LRTD G EF +F EFC GIKR +TP QNG++ER
Sbjct: 116 FRE*HTLIGNQLGTKLKVLRTDNGLEFVLEQFNEFCRKIGIKRHKIVPHTP*QNGLAERM 295
Query: 620 NRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKPSVNFF 679
N TI+ VRCML ++P+ FW EA N + Y+ NR P+ + TP E WSG+ + F
Sbjct: 296 NMTILERVRCMLLSARLPKTFWGEAANTTSYLINRCPSSTLGFKTPMEAWSGE--TT*LF 469
Query: 680 RIFG 683
RI G
Sbjct: 470 RIKG 481
Score = 41.6 bits (96), Expect(2) = 7e-28
Identities = 19/40 (47%), Positives = 26/40 (64%)
Frame = +3
Query: 522 PIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESFK 561
P + K++ YF+T IDDF R+ W+Y+L KS ESFK
Sbjct: 3 PSRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKS---ESFK 113
Score = 40.4 bits (93), Expect = 0.005
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +3
Query: 672 KKPSVNFFRIFGCVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYRLY--DPVSKKIII 729
K P+ + ++FG +A+ HV ++ KLD R++KC+++G + K Y+L+ +P + II
Sbjct: 453 KPPNYSGLKVFGSLAFDHV---KQGKLDARAVKCVFIGYPKGVKRYKLWKLEPGETRCII 623
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 120 bits (300), Expect = 5e-27
Identities = 54/114 (47%), Positives = 76/114 (66%)
Frame = +3
Query: 1218 DDRKSTSGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQV 1277
DDRKST+G+VF +G + W SKKQ +V+LST EAE++AA SC C IWLR +L L
Sbjct: 9 DDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMP 188
Query: 1278 QGKCSTIYCDNSSTIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCSTE 1331
Q + I DN S + L+KNPV H +SKHI+ RYHF+R+ + ++L + ++
Sbjct: 189 QEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQ 350
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 119 bits (299), Expect = 7e-27
Identities = 68/183 (37%), Positives = 109/183 (59%), Gaps = 4/183 (2%)
Frame = +1
Query: 907 GEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFL 966
G I++ KARLVAK Y Q G D+T F+PVA+ + + ++A V W +F LD K+AFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 967 HGKIDETVFVDQPQGYQVRG-AERKVYKLHKALYGLRQAPRAW---YSRIDSYFQKQGFV 1022
HG ++E V+++QP G+ +G + V +L ++ YGL+Q+PRAW Y ++
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAWPFLYCGAAIWYDSH--- 378
Query: 1023 RSDSDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYF 1082
++DH+++ G I + +YVDD+ TG+ + I+ K + +F DLGK+ YF
Sbjct: 379 --EADHSVFYCHSPQG-CIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYF 549
Query: 1083 LGV 1085
LG+
Sbjct: 550 LGI 558
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,987,633
Number of Sequences: 63676
Number of extensions: 752120
Number of successful extensions: 4628
Number of sequences better than 10.0: 174
Number of HSP's better than 10.0 without gapping: 4293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4492
length of query: 1331
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1222
effective length of database: 5,698,948
effective search space: 6964114456
effective search space used: 6964114456
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0112.11