TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0111b.9
         (341 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC224605 homologue to UP|PRO1_SOYBN (O65809) Profilin 1 (GmPRO1)...    31  0.71
TC225576 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, ...    30  1.6
TC214940 homologue to UP|Q75NI2 (Q75NI2) Type 1 metallothionein,...    30  2.1
TC225914 homologue to UP|Q75NI2 (Q75NI2) Type 1 metallothionein,...    30  2.1
TC216507 similar to GB|AAL15354.1|16323240|AY057724 AT5g14920/F2...    30  2.1
TC215788 weakly similar to UP|O22627 (O22627) Auxin-induced prot...    29  2.7
TC225575 similar to UP|Q9M6E4 (Q9M6E4) Poly(A)-binding protein (...    29  2.7
TC208002 similar to PIR|D86282|D86282 protein F10B6.26 [imported...    29  2.7
CF806042                                                               28  4.6
BI941615                                                               28  4.6

>TC224605 homologue to UP|PRO1_SOYBN (O65809) Profilin 1 (GmPRO1) (Allergen
           Gly m 3), complete
          Length = 713

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 16/38 (42%), Positives = 19/38 (49%), Gaps = 3/38 (7%)
 Frame = +1

Query: 209 W*MERLAVVHSHP---YFRHSEAYGH*SCYCEEWRRSL 243
           W + R   +H HP   + RHS   G   CYCEE R  L
Sbjct: 235 WIVSRCHQIHGHPGRAWCRHSRQEGSWWCYCEEDRCGL 348


>TC225576 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, partial (93%)
          Length = 2491

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/35 (42%), Positives = 20/35 (56%)
 Frame = -2

Query: 160  ASRRLLI*VGEWQHLLLV*GLEWAWGLGLVSSFCA 194
            A+RR+ I    W+HLLL     W W LGL+   C+
Sbjct: 1824 AARRVTIDTSPWKHLLL---HHWHWLLGLLHRTCS 1729


>TC214940 homologue to UP|Q75NI2 (Q75NI2) Type 1 metallothionein, complete
          Length = 426

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 289 C*YGYWSIM*FKLMTVDFDVILLPRRCALV 318
           C*Y Y+S + FK++ +D     + RRC+L+
Sbjct: 356 C*YIYYSYLCFKVINLDLTCSCMGRRCSLI 267


>TC225914 homologue to UP|Q75NI2 (Q75NI2) Type 1 metallothionein, complete
          Length = 582

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 289 C*YGYWSIM*FKLMTVDFDVILLPRRCALV 318
           C*Y Y+S + FK++ +D     + RRC+L+
Sbjct: 361 C*YIYYSYLCFKVINLDLTCSCMGRRCSLI 272


>TC216507 similar to GB|AAL15354.1|16323240|AY057724 AT5g14920/F2G14_40
           {Arabidopsis thaliana;} , partial (22%)
          Length = 680

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 70  FPSWISWLASSQVGHVGSFEAAWWSWYPRCDTREY 104
           + SW  W    +V H GS+  +WW +Y R   R Y
Sbjct: 187 YRSWWRWSNRRRVHHWGSWCWSWWLYYWRLRGRGY 83


>TC215788 weakly similar to UP|O22627 (O22627) Auxin-induced protein, partial
           (75%)
          Length = 1350

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 66  LYLVFPSWISWLASSQVGHVGS 87
           +YL+FPSW S L+S  V  +G+
Sbjct: 512 MYLIFPSWTSLLSSPMVSSMGT 447


>TC225575 similar to UP|Q9M6E4 (Q9M6E4) Poly(A)-binding protein (Fragment),
           partial (38%)
          Length = 791

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/35 (42%), Positives = 20/35 (56%)
 Frame = -2

Query: 160 ASRRLLI*VGEWQHLLLV*GLEWAWGLGLVSSFCA 194
           A+RR+ I    W+HLLL     W W LGL+   C+
Sbjct: 160 AARRVTIDTPPWKHLLL---HHWHWLLGLLHRTCS 65


>TC208002 similar to PIR|D86282|D86282 protein F10B6.26 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;} , partial
           (84%)
          Length = 932

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/31 (45%), Positives = 18/31 (57%)
 Frame = +2

Query: 92  WWSWYPRCDTREYFLVEEIGVGLCAKI*EVV 122
           WW W+P+   R +FLV    VG C  I +VV
Sbjct: 77  WWLWFPKKMLRHWFLVP---VGSCNVIEKVV 160


>CF806042 
          Length = 604

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 87  SFEAAWWSWYPRCDTR 102
           SF   WW W+PRC  R
Sbjct: 195 SFLRCWWWWWPRCPRR 242


>BI941615 
          Length = 331

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 7/13 (53%), Positives = 11/13 (83%)
 Frame = -2

Query: 87 SFEAAWWSWYPRC 99
          ++E++WWSW P C
Sbjct: 39 AYESSWWSWMPSC 1


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.358    0.162    0.621 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,076,546
Number of Sequences: 63676
Number of extensions: 355576
Number of successful extensions: 4210
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4201
length of query: 341
length of database: 12,639,632
effective HSP length: 98
effective length of query: 243
effective length of database: 6,399,384
effective search space: 1555050312
effective search space used: 1555050312
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 59 (27.3 bits)