BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0111a.4
(74 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC208780 similar to GB|AAP68270.1|31711828|BT008831 At1g53290 {A... 145 3e-36
TC233279 similar to GB|AAP68270.1|31711828|BT008831 At1g53290 {A... 137 1e-33
TC208779 similar to GB|AAP68270.1|31711828|BT008831 At1g53290 {A... 136 2e-33
BE820648 similar to GP|14488078|gb| At1g05170/YUP8H12_22 {Arabid... 47 1e-06
TC209700 similar to UP|O23050 (O23050) YUP8H12.22 protein (At1g0... 45 7e-06
TC216426 homologue to UP|Q9ZS49 (Q9ZS49) Avr9 elicitor response ... 41 1e-04
TC216425 similar to UP|Q9ZS49 (Q9ZS49) Avr9 elicitor response pr... 40 2e-04
TC233643 similar to UP|O23050 (O23050) YUP8H12.22 protein (At1g0... 33 0.035
CO984735 31 0.13
TC217408 similar to UP|Q84TG1 (Q84TG1) At3g09720, partial (62%) 30 0.18
BE210469 similar to GP|14488078|gb| At1g05170/YUP8H12_22 {Arabid... 30 0.30
TC209290 similar to UP|O23050 (O23050) YUP8H12.22 protein (At1g0... 28 1.1
TC204489 UP|O04132 (O04132) SRC1, complete 27 1.9
AI748370 similar to GP|4138265|emb| Avr9 elicitor response prote... 27 2.5
TC208254 similar to UP|Q6ZFI5 (Q6ZFI5) Parathymosin-like, partia... 26 3.3
CD399038 26 3.3
BU548176 26 4.3
BQ473377 25 5.7
TC227818 weakly similar to UP|Q7FN01 (Q7FN01) Beta 1,3-glycosylt... 25 7.4
TC210159 similar to UP|Q7DLS9 (Q7DLS9) G14587-6 protein (Fragmen... 25 7.4
>TC208780 similar to GB|AAP68270.1|31711828|BT008831 At1g53290 {Arabidopsis
thaliana;} , partial (51%)
Length = 969
Score = 145 bits (367), Expect = 3e-36
Identities = 64/74 (86%), Positives = 71/74 (95%)
Frame = +2
Query: 1 FRMFSNEDVTIGAWMLAMNVNHENNHELCAPECTSTSIAVWDIPKCSGLCNPEKRMLELH 60
FRMFSNEDVTIGAWMLAMNVNHENNHELC+ +CT+TSIAVWDIPKCSGLCNPEK+MLELH
Sbjct: 314 FRMFSNEDVTIGAWMLAMNVNHENNHELCSTDCTATSIAVWDIPKCSGLCNPEKKMLELH 493
Query: 61 QMESCTQSPTAESD 74
Q E+C++SPT ESD
Sbjct: 494 QKEACSKSPTLESD 535
>TC233279 similar to GB|AAP68270.1|31711828|BT008831 At1g53290 {Arabidopsis
thaliana;} , partial (20%)
Length = 412
Score = 137 bits (344), Expect = 1e-33
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +2
Query: 5 SNEDVTIGAWMLAMNVNHENNHELCAPECTSTSIAVWDIPKCSGLCNPEKRMLELHQMES 64
SNEDVTIGAWMLAMNVNHENN ELCA ECTSTSIAVWDIPKCSGLCNPEKRMLELHQ ES
Sbjct: 2 SNEDVTIGAWMLAMNVNHENNLELCARECTSTSIAVWDIPKCSGLCNPEKRMLELHQKES 181
Query: 65 CTQSPTAESD 74
TQSPT +SD
Sbjct: 182STQSPTVDSD 211
>TC208779 similar to GB|AAP68270.1|31711828|BT008831 At1g53290 {Arabidopsis
thaliana;} , partial (26%)
Length = 561
Score = 136 bits (343), Expect = 2e-33
Identities = 61/72 (84%), Positives = 68/72 (93%)
Frame = +3
Query: 3 MFSNEDVTIGAWMLAMNVNHENNHELCAPECTSTSIAVWDIPKCSGLCNPEKRMLELHQM 62
MFSNEDVTIGA MLAMNVNHENNHELC+ +CT+TSIAVWDIPKCSGLCNPEK+MLELHQ
Sbjct: 48 MFSNEDVTIGAXMLAMNVNHENNHELCSTDCTATSIAVWDIPKCSGLCNPEKKMLELHQK 227
Query: 63 ESCTQSPTAESD 74
E+C++SPT ESD
Sbjct: 228 ETCSKSPTLESD 263
>BE820648 similar to GP|14488078|gb| At1g05170/YUP8H12_22 {Arabidopsis
thaliana}, partial (24%)
Length = 503
Score = 47.4 bits (111), Expect = 1e-06
Identities = 21/67 (31%), Positives = 41/67 (60%), Gaps = 9/67 (13%)
Frame = -3
Query: 4 FSNEDVTIGAWMLAMNVNHENNHELCA---------PECTSTSIAVWDIPKCSGLCNPEK 54
++NEDV++G+W + ++V+H ++ ++C + + +A +D KCSG+C +
Sbjct: 438 YANEDVSLGSWFIGLDVDHVDDRKMCCGTPPD*EWKAQAGNICVASFDW-KCSGICRSVE 262
Query: 55 RMLELHQ 61
RM E+HQ
Sbjct: 261 RMKEVHQ 241
>TC209700 similar to UP|O23050 (O23050) YUP8H12.22 protein
(At1g05170/YUP8H12_22), partial (46%)
Length = 1016
Score = 45.1 bits (105), Expect = 7e-06
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 9/67 (13%)
Frame = +2
Query: 4 FSNEDVTIGAWMLAMNVNHENNHELCA---PECT------STSIAVWDIPKCSGLCNPEK 54
++NEDV++G+W + ++V H ++ LC P+C + +A +D CSG+C +
Sbjct: 329 YANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDW-SCSGICRSAE 505
Query: 55 RMLELHQ 61
R+ E+H+
Sbjct: 506 RIKEVHR 526
>TC216426 homologue to UP|Q9ZS49 (Q9ZS49) Avr9 elicitor response protein,
partial (31%)
Length = 780
Score = 40.8 bits (94), Expect = 1e-04
Identities = 19/66 (28%), Positives = 37/66 (55%), Gaps = 9/66 (13%)
Frame = +1
Query: 4 FSNEDVTIGAWMLAMNVNHENNHELCA---PECT------STSIAVWDIPKCSGLCNPEK 54
++NEDV++GAW + + V H ++ +C P+C + +A +D CSG+C +
Sbjct: 139 YANEDVSLGAWFIGLEVEHIDDRNMCCGTPPDCEWKAQAGNVCVASFDW-SCSGICKSVE 315
Query: 55 RMLELH 60
++ +H
Sbjct: 316 KIKYVH 333
>TC216425 similar to UP|Q9ZS49 (Q9ZS49) Avr9 elicitor response protein, partial
(91%)
Length = 1691
Score = 40.4 bits (93), Expect = 2e-04
Identities = 19/66 (28%), Positives = 37/66 (55%), Gaps = 9/66 (13%)
Frame = +2
Query: 4 FSNEDVTIGAWMLAMNVNHENNHELCA---PECT------STSIAVWDIPKCSGLCNPEK 54
++NEDV++GAW + + V H ++ +C P+C + +A +D CSG+C +
Sbjct: 1028 YANEDVSLGAWFIGLEVEHIDDRNMCCGTPPDCEWKAQAGNICVASFDW-SCSGICKSVE 1204
Query: 55 RMLELH 60
++ +H
Sbjct: 1205 KIKYVH 1222
>TC233643 similar to UP|O23050 (O23050) YUP8H12.22 protein
(At1g05170/YUP8H12_22), partial (41%)
Length = 715
Score = 32.7 bits (73), Expect = 0.035
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +3
Query: 4 FSNEDVTIGAWMLAMNVNHENNHELC 29
++NEDV++G+W + + V+H ++ LC
Sbjct: 405 YANEDVSLGSWFIGLYVDHIDDRRLC 482
>CO984735
Length = 730
Score = 30.8 bits (68), Expect = 0.13
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 25 NHELCAPECTSTSIAVWDIPKCSGLCN 51
+ ELC+P+C+ A+W PKCS C+
Sbjct: 239 HEELCSPDCSGYE-ALWRSPKCSTWCS 162
>TC217408 similar to UP|Q84TG1 (Q84TG1) At3g09720, partial (62%)
Length = 1368
Score = 30.4 bits (67), Expect = 0.18
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 11 IGAWMLAMNVNHENNHELCAPEC 33
IG W +N+NH+ H L +P C
Sbjct: 1207 IGCWQCCLNLNHDCRHILLSPHC 1275
>BE210469 similar to GP|14488078|gb| At1g05170/YUP8H12_22 {Arabidopsis
thaliana}, partial (17%)
Length = 380
Score = 29.6 bits (65), Expect = 0.30
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Frame = +2
Query: 16 LAMNVNHENNHELCA---PECT------STSIAVWDIPKCSGLCNPEKRMLELHQ 61
+ ++VNH ++ LC P+C + +A +D CSG+C +R+ E+H+
Sbjct: 11 IGLDVNHIDDRRLCCGTPPDCEWKAQAGNVCVASFDWT-CSGICRSAERIKEVHK 172
>TC209290 similar to UP|O23050 (O23050) YUP8H12.22 protein
(At1g05170/YUP8H12_22), partial (13%)
Length = 653
Score = 27.7 bits (60), Expect = 1.1
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = -2
Query: 45 KCSGLCNPEKRMLELHQ 61
KCSG+C +RM E+HQ
Sbjct: 400 KCSGICRSVERMKEVHQ 350
>TC204489 UP|O04132 (O04132) SRC1, complete
Length = 609
Score = 26.9 bits (58), Expect = 1.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 14 WMLAMNVNHENNHELCAPECTSTSIAVWDIPKCSGLCNP 52
W+L++ ++ + LC+P C S + P CS LC+P
Sbjct: 263 WILSLILS--TSPSLCSPWCCSPLCSPLCSPWCSPLCSP 153
>AI748370 similar to GP|4138265|emb| Avr9 elicitor response protein
{Nicotiana tabacum}, partial (17%)
Length = 226
Score = 26.6 bits (57), Expect = 2.5
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +2
Query: 4 FSNEDVTIGAWMLAMNVNHENNHELC---APEC 33
+++EDV++GAW++ + +C P+C
Sbjct: 41 YADEDVSLGAWLIDREAERIDERSMC*ERPPDC 139
>TC208254 similar to UP|Q6ZFI5 (Q6ZFI5) Parathymosin-like, partial (38%)
Length = 1511
Score = 26.2 bits (56), Expect = 3.3
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 33 CTSTSIAVWDIPKCSGLCNP 52
C S WD+ CS LC P
Sbjct: 797 CKLFSFCCWDLGDCSSLCKP 738
>CD399038
Length = 387
Score = 26.2 bits (56), Expect = 3.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 21 NHENNHELCAPECTSTSIAVW 41
N ENNH+ C PE ++A +
Sbjct: 231 NQENNHKACVPEGLCVNVACY 293
>BU548176
Length = 411
Score = 25.8 bits (55), Expect = 4.3
Identities = 12/37 (32%), Positives = 19/37 (50%), Gaps = 5/37 (13%)
Frame = -2
Query: 2 RMFSNEDVTIGAWMLAMN-----VNHENNHELCAPEC 33
R+F EDV++G W+ N V + +N + C C
Sbjct: 347 RLFKMEDVSMGMWVERFNNTVAAVQYSHNWKFCQYGC 237
>BQ473377
Length = 453
Score = 25.4 bits (54), Expect = 5.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 19 NVNHENNHELCAPECTSTSIAVWDIPKCSGL 49
N++H N LC P T T IPKC GL
Sbjct: 411 NIHHTNTILLCHPNSTRTPGG--*IPKCLGL 325
>TC227818 weakly similar to UP|Q7FN01 (Q7FN01) Beta
1,3-glycosyltransferase-like protein II, partial (26%)
Length = 677
Score = 25.0 bits (53), Expect = 7.4
Identities = 6/28 (21%), Positives = 18/28 (63%)
Frame = +2
Query: 2 RMFSNEDVTIGAWMLAMNVNHENNHELC 29
+ ++ +D ++G+WM+ + + ++ LC
Sbjct: 158 KTYAYDDTSLGSWMMGVQATYIDDSRLC 241
>TC210159 similar to UP|Q7DLS9 (Q7DLS9) G14587-6 protein (Fragment), partial
(20%)
Length = 939
Score = 25.0 bits (53), Expect = 7.4
Identities = 10/39 (25%), Positives = 25/39 (63%)
Frame = +3
Query: 36 TSIAVWDIPKCSGLCNPEKRMLELHQMESCTQSPTAESD 74
+S++V + C+G+CN + + +++ ++S Q + +SD
Sbjct: 702 SSLSVPKVKSCTGMCNSKDKCMDV--IQSLRQRQSFDSD 812
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.127 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,563,217
Number of Sequences: 63676
Number of extensions: 73987
Number of successful extensions: 436
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of query: 74
length of database: 12,639,632
effective HSP length: 50
effective length of query: 24
effective length of database: 9,455,832
effective search space: 226939968
effective search space used: 226939968
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0111a.4