BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0110a.16
(1427 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 385 e-107
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 382 e-106
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 170 4e-42
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 157 2e-38
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 157 4e-38
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara... 155 2e-37
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 141 2e-33
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 140 4e-33
BM307983 125 1e-28
BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberos... 124 4e-28
BM527454 weakly similar to GP|27901709|gb| gag-pol polyprotein {... 74 4e-27
BI972503 weakly similar to GP|18378607|gb polyprotein {Oryza sat... 119 7e-27
CO981879 87 1e-25
CO983154 108 1e-23
BE211208 108 2e-23
BM086359 108 2e-23
AI959950 107 5e-23
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 89 6e-23
BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa ... 82 6e-23
BI427153 105 1e-22
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 385 bits (989), Expect = e-107
Identities = 288/1028 (28%), Positives = 470/1028 (45%), Gaps = 18/1028 (1%)
Frame = +1
Query: 255 KKDRDRPLCSYCGKLGHSVDRCFKKHGYPPGLNFKNKSSAVHHVDSSEVSGSSVPQDPPI 314
K R + C YCGK GH C+ HG+P HH S SG + P
Sbjct: 1489 KSKRKKWRCHYCGKYGHIKPFCYHLHGHP------------HHGTQSSSSGRKMMWVPK- 1629
Query: 315 TSSQYQQLLSLLTAQLATSPMPSSSTSEPLQIPSPTDLKGFVFSASSDFSHKTSVWILDS 374
+++SL+ T L+ SA D W LDS
Sbjct: 1630 -----HKIVSLVVH---------------------TSLRA---SAKED-------WYLDS 1701
Query: 375 GASCHVCFHLSSFESYHSVRSHTISLPDNTKARVTHIGTVKLGNSLILHNVCYVPTFTVN 434
G S H+ + + ++ D +K ++T +G + L+ V V T N
Sbjct: 1702 GCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTAN 1881
Query: 435 LLSVSALLENPKYSIHFFHKTFVIQENKLKTIGRGDTHNGLYYLHASSNNVFSASTSPLS 494
L+S+S L + ++++F ++ K + + +G YL +S ST S
Sbjct: 1882 LISISQLCDEG-FNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYS-STCLFS 2055
Query: 495 VLNSLCNQSVFPSHCNKSTCTAALWHARLGHPSYNRLS-LLSSTIHCKIPS-SINEN-VC 551
+ + +WH R GH + ++ IP+ I E +C
Sbjct: 2056 KEDEV-----------------KIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRIC 2184
Query: 552 PVCPLAKQKRLPFVSENH-FANHSFDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWT 610
C + KQ ++ H + +L+H D+ GP V + G R+ +VDD SRFTW
Sbjct: 2185 GECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWV 2364
Query: 611 FLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAKELQ---LTAFLEKQGTLHQFSCV 667
I+ KS+ +Q + VIK +R+D+ +E + T F +G H+FS
Sbjct: 2365 NFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAA 2544
Query: 668 ERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSPST 727
PQQN +VER+++ L AR +L +P W E ++TA ++ N + L +P+T
Sbjct: 2545 ITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRV---TLRRGTPTT 2715
Query: 728 LLYQ----QDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLYNLT 783
L Y+ + P+ H +FG C+ R K P++ + +G Y+
Sbjct: 2716 L-YEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLG----------YSTN 2862
Query: 784 TKTFHISRDVVFNESIFPFQNTRPYVYSQDPFLVPLP*VGLSVPPYDVPQPESVPVPSAD 843
++ + VFN TR + S + + L P E S D
Sbjct: 2863 SRAYR-----VFNS------RTRTVMESINVVVDDLT-------PARKKDVEEDVRTSGD 2988
Query: 844 HIPATPLVSEIVAPSPDAIVPPLA----VRRSTRVR--HPPGYLADYDCPQQTTPHPLST 897
++ T +E S A P R S R++ HP + P+ T
Sbjct: 2989 NVADTAKSAENAENSDSATDEPNINQPDKRPSIRIQKMHPKELIIG-------DPNRGVT 3147
Query: 898 YYSYDKLTPSYKVYSVKVASHYEPTYFHQAIQYPEWQQAMRTELAAMEANQTWDVVSLPP 957
S + S + K+ EP +A+ W AM+ EL + N+ W++V P
Sbjct: 3148 TRSREIEIVSNSCFVSKI----EPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPE 3315
Query: 958 GKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLAL 1017
G + IG+KW++K K + +G I R+KARLVA+GYTQ G+D+ +TF+PVA++ ++R+LL +
Sbjct: 3316 GTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGV 3495
Query: 1018 AAMYKWELFQLDINNAFLNGDLFEEVYMKIPQGY-DVKGENLTCRLKKSIYGLKQASRQW 1076
A + K++L+Q+D+ +AFLNG L EE Y++ P+G+ D + RLKK++YGLKQA R W
Sbjct: 3496 ACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAW 3675
Query: 1077 FAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKS 1136
+ + + LTQ G++ D +LF K + ++ +YV+DI+ G + + Q ++S
Sbjct: 3676 YERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQS 3855
Query: 1137 AFKLKDLGKLKFFLGLEIAYSATGISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLKLSS 1196
F++ +G+L +FLGL++ I LSQ YA +++ G + P +LKLS
Sbjct: 3856 EFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSK 4035
Query: 1197 DTGPELADSSQYRRLIGRLLYLTISRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRYLKT 1256
D D S YR +IG LLYLT SRPDI + + +++ + P +HL+ + +L+Y+
Sbjct: 4036 DEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNG 4215
Query: 1257 TPGQGFFF 1264
T G +
Sbjct: 4216 TSDYGIMY 4239
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 382 bits (981), Expect = e-106
Identities = 291/1050 (27%), Positives = 470/1050 (44%), Gaps = 24/1050 (2%)
Frame = +1
Query: 255 KKDRDRPLCSYCGKLGHSVDRCFKKHGYPPGLNFKNKSSAVHHVDSSEVSGSSVPQDPPI 314
K R + C YCGK GH C+ HG+P HH S S + P
Sbjct: 1486 KSKRKKWRCHYCGKYGHIKPFCYHLHGHP------------HHGTQSSNSRKKMMWVPK- 1626
Query: 315 TSSQYQQLLSLLTAQLATSPMPSSSTSEPLQIPSPTDLKGFVFSASSDFSHKTSVWILDS 374
+ +SL+ T L+ SA D W LDS
Sbjct: 1627 -----HKAVSLVVH---------------------TSLRA---SAKED-------WYLDS 1698
Query: 375 GASCHVCFHLSSFESYHSVRSHTISLPDNTKARVTHIGTVKLGNSLILHNVCYVPTFTVN 434
G S H+ + + ++ D +K ++ +G + L+ V V T N
Sbjct: 1699 GCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTAN 1878
Query: 435 LLSVSALLENPKYSIHFFHKTFVIQENKLKTIGRGDTHNGLYYLHASSNNVFSASTSPLS 494
L+S+S L + ++++F ++ K + + +G YL +S
Sbjct: 1879 LISISQLCDEG-FNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYS------- 2034
Query: 495 VLNSLCNQSVFPSHCNKSTCTAA------LWHARLGHPSYNRLS-LLSSTIHCKIPS-SI 546
STC ++ +WH R GH + ++ IP+ I
Sbjct: 2035 -----------------STCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKI 2163
Query: 547 NEN-VCPVCPLAKQKRLPFVSENH-FANHSFDLIHCDVWGPFHVPTHVGHRFFLTIVDDH 604
E +C C + KQ ++ H + +L+H D+ GP V + G R+ +VDD
Sbjct: 2164 EEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDF 2343
Query: 605 SRFTWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAKELQ---LTAFLEKQGTL 661
SRFTW I+ KSE +Q + VIK +R+D+ +E + T F +G
Sbjct: 2344 SRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGIT 2523
Query: 662 HQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLH 721
H+FS PQQN +VER+++ L AR +L +P W E ++TA ++ N + L
Sbjct: 2524 HEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRV---TLR 2694
Query: 722 NKSPSTLLYQ----QDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGY 777
+P+T LY+ + PS H +FG C+ R K P++ + +GY + Y
Sbjct: 2695 RGTPTT-LYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAY 2871
Query: 778 KLYNLTTKTFHISRDVVFNESIFPFQNTRPYVYSQDPFLVPLP*VGLSVPPYDVPQPESV 837
+++N T+T S +VV ++ + P E
Sbjct: 2872 RVFNSRTRTVMESINVVVDD----------------------------LSPARKKDVEED 2967
Query: 838 PVPSADHIPATPLVSEIVAPSPDAI----VPPLAVRRSTRVR--HPPGYLADYDCPQQTT 891
S D++ E S A + R STR++ HP + TT
Sbjct: 2968 VRTSGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELIIGDPNRGVTT 3147
Query: 892 PHPLSTYYSYDKLTPSYKVYSVKVASHYEPTYFHQAIQYPEWQQAMRTELAAMEANQTWD 951
S + +VK A E ++ A+Q E +Q R E+ W+
Sbjct: 3148 RSREVEIVSNSCFVSKIEPKNVKEALTDE--FWINAMQ-EELEQFKRNEV--------WE 3294
Query: 952 VVSLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTV 1011
+V P G + IG+KW++K K + +G I R+KARLVA+GYTQ G+D+ +TF+PVA++ ++
Sbjct: 3295 LVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESI 3474
Query: 1012 RMLLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQGY-DVKGENLTCRLKKSIYGLK 1070
R+LL +A + K++L+Q+D+ +AFLNG L EEVY++ P+G+ D + RLKK++YGLK
Sbjct: 3475 RLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLK 3654
Query: 1071 QASRQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSV 1130
QA R W+ + + LTQ G++ D +LF K + ++ +YV+DI+ G + +
Sbjct: 3655 QAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHF 3834
Query: 1131 KQLLKSAFKLKDLGKLKFFLGLEIAYSATGISLSQRAYALSLLHDTGFTDCRPTSLPMDP 1190
Q ++S F++ +G+L +FLGL++ I LSQ YA +++ G + P
Sbjct: 3835 VQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPT 4014
Query: 1191 NLKLSSDTGPELADSSQYRRLIGRLLYLTISRPDIAFTMNKLSQFLSKPTTTHLDALHHL 1250
+LKLS D D S YR +IG LLYLT SRPDI + + +++ + P +HL + +
Sbjct: 4015 HLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRI 4194
Query: 1251 LRYLKTTPGQGFFFLGQQPPLSQLTPMLIG 1280
L+Y+ T G + PML+G
Sbjct: 4195 LKYVNGTSDYGIMYCHCS------NPMLVG 4266
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 170 bits (431), Expect = 4e-42
Identities = 82/133 (61%), Positives = 102/133 (76%), Gaps = 1/133 (0%)
Frame = -2
Query: 953 VSLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVR 1012
V LPPGK +G +WVY +K+ P G +DR KARLVAKGYTQ GIDY DTFSPVAK+TTVR
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 1013 MLLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQGYDVKGE-NLTCRLKKSIYGLKQ 1071
+ LA+AA+ W L QLDI NAFL+GDL E++YM+ P G+ +GE L C+L +S+YGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 1072 ASRQWFAKFSSVL 1084
+ R WF KFS V+
Sbjct: 46 SPRAWFGKFSHVV 8
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 157 bits (398), Expect = 2e-38
Identities = 73/128 (57%), Positives = 97/128 (75%)
Frame = +3
Query: 921 PTYFHQAIQYPEWQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDR 980
P+ +A+ +P W+QAM E+ A+E N TW++V LPPGK +G +WVY +K+ P+G +DR
Sbjct: 21 PSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKVDR 200
Query: 981 HKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNGDLF 1040
KARLVAKGYTQ GI+Y DTFSPV +TTVR+ LA+AA+ W L QLDI NAFL+GDL
Sbjct: 201 LKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAFLHGDLE 380
Query: 1041 EEVYMKIP 1048
E++YM+ P
Sbjct: 381 EDIYMEQP 404
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 157 bits (396), Expect = 4e-38
Identities = 105/305 (34%), Positives = 158/305 (51%), Gaps = 4/305 (1%)
Frame = +2
Query: 398 ISLPDNTKARVTHIGTVKLGNSLILHNVCYVPTFTVNLLSVSALLENPKYSIHFFHKTFV 457
I+L D ++ T IG V +SL L++V ++ N+ S+S L S+ F +FV
Sbjct: 20 ITLADGSRVVATGIGHVSPTSSLSLNSVVFILGCPFNITSLSQLTRFRNCSVTFDANSFV 199
Query: 458 IQENKLK-TIGRGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQSVFPSHCNKSTCTA 516
IQE TIG G +GLYYL + + V SA TSP
Sbjct: 200 IQECGTGWTIGVGIESHGLYYLKPNLSWVCSAVTSP------------------------ 307
Query: 517 ALWHARLGHPSYNRLSLLSSTIHCKIPSSINENVCPVCPLAKQKRLPFVSENHFANHSFD 576
L H RLGHP ++L ++ ++ I + C C L K R + F
Sbjct: 308 KLLHERLGHPHLSKLKIMVPSLE-----KIKDLFCESCQLGKHVRSSXRHVESRVDSPFL 472
Query: 577 LIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPLAIMAFFKMVQTQFGK 636
+IH D+WGP V + + +R+F+T +D+ S+ T FL+K +SE L+ + ++TQFGK
Sbjct: 473 VIHXDIWGPNRVSS-MSYRYFVTFIDEFSQCTRVFLMKERSEI-LSFLTSVNKIKTQFGK 646
Query: 637 VIKMVRTDNAKEL---QLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQLLNVARSLLFQ 693
IK++R+DNAKE ++ F QG LHQFSC PQQN + ER+++ L+ AR+LL
Sbjct: 647 TIKILRSDNAKEYFSSVISPFXSAQGILHQFSCPHTPQQNDIAERKNRHLVETARTLLLH 826
Query: 694 SHMPL 698
++ P+
Sbjct: 827 ANEPI 841
>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
thaliana}, partial (18%)
Length = 421
Score = 155 bits (391), Expect = 2e-37
Identities = 74/140 (52%), Positives = 101/140 (71%)
Frame = -2
Query: 1064 KSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPN 1123
KS+YGLKQASR+W+ K +++L + G+ S DYSLFT G+TF LLVYV+DII++G +
Sbjct: 420 KSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTLTKGNTFTALLVYVDDIILAGDS 241
Query: 1124 ATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSATGISLSQRAYALSLLHDTGFTDCRP 1183
E D +K +L AFK+K+LGKLK+FLGLE+A+S GI++SQR Y L LL D+G C+P
Sbjct: 240 IDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCKP 61
Query: 1184 TSLPMDPNLKLSSDTGPELA 1203
S P+D ++KL S G A
Sbjct: 60 ASTPLDTSIKLHSAAGTPYA 1
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 141 bits (356), Expect = 2e-33
Identities = 68/152 (44%), Positives = 104/152 (67%), Gaps = 1/152 (0%)
Frame = -3
Query: 936 AMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNG 995
AM+ EL E N W +V P IG+KWV++ KL G I R+KARLVAKGY Q+ G
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 996 IDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQGYDVKG 1055
IDY +T++PVA++ +RMLLA ++ ++L+Q+D+ +AFLNG + EEVY++ P G+++
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 1056 E-NLTCRLKKSIYGLKQASRQWFAKFSSVLTQ 1086
+ +L+K++YGLKQA R W+ + S+ L +
Sbjct: 98 KPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 140 bits (353), Expect = 4e-33
Identities = 81/179 (45%), Positives = 112/179 (62%), Gaps = 2/179 (1%)
Frame = +1
Query: 976 GSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFL 1035
G+ID+ KARLVAK YTQ G DY TFSPVAK+ V +L ++A + W LF LD NAFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 1036 NGDLFEEVYMKIPQGYDVKGE--NLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSY 1093
+G L EEVYM+ P G+ +GE N+ C+L +S YGLKQ+ R W + + +
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAWPFLYCGAAIWYDSHEA- 384
Query: 1094 HDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGL 1152
D+S+F S + L+VYV+DI ++G + I +K L F+ KDLGKL++FLG+
Sbjct: 385 -DHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558
>BM307983
Length = 406
Score = 125 bits (315), Expect = 1e-28
Identities = 63/133 (47%), Positives = 86/133 (64%), Gaps = 2/133 (1%)
Frame = +2
Query: 962 IGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAK-ITTVRMLLALAAM 1020
+G +W+Y +K D ++DR+KARLVAKGY Q GIDY +TF+ K I + A
Sbjct: 2 VGCRWIYTVKY*ADDTLDRYKARLVAKGYIQTYGIDYEETFAQWQK*IQSGSSSP*QQAQ 181
Query: 1021 YKWELFQLDINNAFLNGDLFEEVYMKIPQGYDV-KGENLTCRLKKSIYGLKQASRQWFAK 1079
+ WE+ Q D+ NAFL+G L EEVYM+IP GY G N CRLKK++YGLKQ+ R WF +
Sbjct: 182 FGWEMHQFDVKNAFLHGSLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPRAWFGR 361
Query: 1080 FSSVLTQHGFQHS 1092
F+ + G++ S
Sbjct: 362 FTQAMLSLGYKQS 400
>BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial
(21%)
Length = 421
Score = 124 bits (310), Expect = 4e-28
Identities = 64/134 (47%), Positives = 92/134 (67%), Gaps = 1/134 (0%)
Frame = +2
Query: 1095 DYSLF-TKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLE 1153
D+S+F S V L+VYV+DI+++ +AT+I +K+ L + F+ KDL LK+FLG+E
Sbjct: 17 DHSVFYCHTSPGKCVYLMVYVDDIMITKKDATKIVQLKEHLFNHFQTKDLRYLKYFLGIE 196
Query: 1154 IAYSATGISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIG 1213
+A S G+ +SQR YAL +L +TG +CR PMDPNLKL + D +YRRL+G
Sbjct: 197 VAQSGDGVVISQRKYALDILEETGMQNCRLVDSPMDPNLKLMAYQSEVYPDPERYRRLVG 376
Query: 1214 RLLYLTISRPDIAF 1227
+L+YLTI+RPDI+F
Sbjct: 377 KLIYLTITRPDISF 418
>BM527454 weakly similar to GP|27901709|gb| gag-pol polyprotein {Vitis
vinifera}, partial (19%)
Length = 437
Score = 74.3 bits (181), Expect(2) = 4e-27
Identities = 33/71 (46%), Positives = 47/71 (65%)
Frame = +1
Query: 1173 LHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLYLTISRPDIAFTMNKL 1232
+ TG +DCRP MDPN KL + G +DS +YR L+G+L+YLTI+RP+I+F + +
Sbjct: 220 IRHTGMSDCRPIDSLMDPNKKLLPNQGKPYSDSERYRILVGKLIYLTITRPNISFVVGVV 399
Query: 1233 SQFLSKPTTTH 1243
SQF+ P H
Sbjct: 400 SQFMQSPHNDH 432
Score = 67.4 bits (163), Expect(2) = 4e-27
Identities = 34/71 (47%), Positives = 49/71 (68%)
Frame = +2
Query: 1103 SGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSATGIS 1162
S V L+VYV+DI+++G + +I +K L S F+ KDLGK ++FLG+E+A S GI
Sbjct: 20 SSSRCVYLMVYVDDIVITGNDQGKIAQLKGHLFSHFQTKDLGKFEYFLGIEVAQSKDGII 199
Query: 1163 LSQRAYALSLL 1173
+SQR YAL +L
Sbjct: 200 ISQRKYALDIL 232
>BI972503 weakly similar to GP|18378607|gb polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (5%)
Length = 327
Score = 119 bits (299), Expect = 7e-27
Identities = 57/108 (52%), Positives = 78/108 (71%)
Frame = +2
Query: 1120 SGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSATGISLSQRAYALSLLHDTGFT 1179
+G +AT+I +K+ L S F+ KDLG LK+FLG+E+A S + +SQR YAL +L +TG
Sbjct: 2 TGNDATKIVQLKEHLFSHFQTKDLGYLKYFLGIEVAQSGVDVVISQRKYALDILEETGMQ 181
Query: 1180 DCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLYLTISRPDIAF 1227
+CRP PMDPNLKL +D D +YRRL+G+L+YLTI+RPDI+F
Sbjct: 182 NCRPVDSPMDPNLKLMADQSEIYHDPERYRRLVGKLIYLTITRPDISF 325
>CO981879
Length = 576
Score = 86.7 bits (213), Expect(2) = 1e-25
Identities = 44/91 (48%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Frame = -1
Query: 626 FFKMVQTQFGKVIKMVRTDNAKEL---QLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQ 682
FF+M+QTQF IK+ R+DN +E L+ + G +HQ SCV+ PQQN V ER+++
Sbjct: 558 FFQMIQTQFQVKIKVFRSDNGREYFNKHLSKXXLENGIIHQSSCVDTPQQNGVAERKNRH 379
Query: 683 LLNVARSLLFQSHMPLVFWGECISTATHLIN 713
L VAR+LLFQ+ P WGE I T T+L N
Sbjct: 378 LXEVARALLFQNKAPKYXWGEAILTGTYLKN 286
Score = 50.1 bits (118), Expect(2) = 1e-25
Identities = 24/59 (40%), Positives = 32/59 (53%)
Frame = -2
Query: 739 LRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLYNLTTKTFHISRDVVFNE 797
L++FGC F + K PRA CV VGY KGYK ++ T+K ++ DV F E
Sbjct: 194 LKIFGCTVFVHIHEPNQGKLEPRAKKCVFVGYAPNQKGYKCFDPTSKKTFVTIDVTFFE 18
>CO983154
Length = 568
Score = 108 bits (271), Expect = 1e-23
Identities = 53/130 (40%), Positives = 82/130 (62%), Gaps = 2/130 (1%)
Frame = +3
Query: 670 PQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSPSTLL 729
PQQN + ER+++ LL ARSL+ ++P+ WG+ + T+ LIN +P+ +L N+ P +L+
Sbjct: 9 PQQNGIAERKNRHLLETARSLMLNLNVPIHHWGDAVLTSCFLINRMPSSSLENQIPHSLV 188
Query: 730 YQQDPSYDHL--RVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLYNLTTKTF 787
+ DP + H+ +VFGC CF L K S R+V CV +GY + KGYK Y+ T + +
Sbjct: 189 FPHDPLF-HVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYKCYSPTMRRY 365
Query: 788 HISRDVVFNE 797
++S DV F E
Sbjct: 366 YMSADVTFFE 395
>BE211208
Length = 413
Score = 108 bits (270), Expect = 2e-23
Identities = 58/129 (44%), Positives = 83/129 (63%), Gaps = 1/129 (0%)
Frame = +2
Query: 1108 VVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSATG-ISLSQR 1166
V LLVYV+DII++G + I S+ L S F LK LG+L +FLG+E+ ++ TG + L+Q
Sbjct: 26 VYLLVYVDDIIITGRSNYLIQSLVHHLNSNFSLKQLGQLDYFLGIEVHHTPTGSVLLTQS 205
Query: 1167 AYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLYLTISRPDIA 1226
Y LLH T + +P S PM NL+LS + L+D + YR ++G L Y TI+RP+I+
Sbjct: 206 KYICDLLHKTDMAEAKPISSPMVTNLRLSKNGDDLLSDPTMYRSVVGALQYPTITRPEIS 385
Query: 1227 FTMNKLSQF 1235
F NK+ QF
Sbjct: 386 FAANKVCQF 412
>BM086359
Length = 427
Score = 108 bits (269), Expect = 2e-23
Identities = 54/115 (46%), Positives = 74/115 (63%)
Frame = +1
Query: 1150 LGLEIAYSATGISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSSQYR 1209
LG+++A S+ GI +SQ YAL +L +TG DC P++ PMDPN+KL S G L D +
Sbjct: 1 LGIDVAQSSYGIVISQWKYALDILTETGMLDCLPSNTPMDPNVKLLSGQGEALEDPGR*C 180
Query: 1210 RLIGRLLYLTISRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRYLKTTPGQGFFF 1264
L+GRL YLT++R DI F + LSQFL PT + +A +LRY+K PG G +
Sbjct: 181 CLVGRLNYLTVTRLDITFAVGVLSQFLKDPTDSQWNATIRILRYIKNAPGPGLLY 345
>AI959950
Length = 466
Score = 107 bits (266), Expect = 5e-23
Identities = 52/118 (44%), Positives = 79/118 (66%)
Frame = -1
Query: 935 QAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQN 994
+AM+ EL + N +V LP K +G KW++ KL DG + R+KARLVAKGY+QQ
Sbjct: 394 KAMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQE 215
Query: 995 GIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQGYD 1052
GIDY TF+ VA++ + +LL+ A +L+Q+D+ +AFLNG + +EVY++ P G++
Sbjct: 214 GIDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFE 41
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 88.6 bits (218), Expect(2) = 6e-23
Identities = 51/160 (31%), Positives = 79/160 (48%)
Frame = +3
Query: 1105 DTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSATGISLS 1164
+TF+++ +YV+DII + +L+K F+ G+LKF LGL+I GI +
Sbjct: 480 ETFLIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIH 659
Query: 1165 QRAYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLYLTISRPD 1224
Q Y S L + +P + PM + + D +Y +I L YLT SRPD
Sbjct: 660 QEKYTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPD 839
Query: 1225 IAFTMNKLSQFLSKPTTTHLDALHHLLRYLKTTPGQGFFF 1264
I F + ++F S P +H+ A+ +LRYL T +F
Sbjct: 840 IVFVVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWF 959
Score = 38.9 bits (89), Expect(2) = 6e-23
Identities = 17/36 (47%), Positives = 22/36 (60%)
Frame = +2
Query: 1066 IYGLKQASRQWFAKFSSVLTQHGFQHSYHDYSLFTK 1101
+YGLKQA R W+ + SS L +GF D +LF K
Sbjct: 362 VYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRK 469
>BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 430
Score = 82.0 bits (201), Expect(2) = 6e-23
Identities = 38/89 (42%), Positives = 61/89 (67%)
Frame = +1
Query: 920 EPTYFHQAIQYPEWQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSID 979
EP+ QA+ P W+QAM+ + A+ N+T + SLP GK I KWV+++K + G+++
Sbjct: 31 EPSTVKQALISPPWRQAMQADFDALMENKTLTLTSLPSGKAAIDCKWVFRIKENLYGTLN 210
Query: 980 RHKARLVAKGYTQQNGIDYMDTFSPVAKI 1008
R+++RLVAKG+ + G DY +TFSPV ++
Sbjct: 211 RYRSRLVAKGFHLKFGCDYSETFSPVIEL 297
Score = 45.4 bits (106), Expect(2) = 6e-23
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = +3
Query: 1010 TVRMLLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQGYD 1052
T+R++L +A W L Q+DINNAFL+G L EEVYM G++
Sbjct: 300 TIRLILFIALTNHWPLQQVDINNAFLHGLLTEEVYMVQLPGFE 428
>BI427153
Length = 422
Score = 105 bits (263), Expect = 1e-22
Identities = 53/137 (38%), Positives = 79/137 (56%), Gaps = 1/137 (0%)
Frame = +1
Query: 662 HQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLH 721
HQ +C PQQN + ER++ LL ARSL+ S++P WG+ + TA LIN +P+ +L
Sbjct: 1 HQSTCPHTPQQNGIAERKNHHLLETARSLMLNSNVPTHHWGDAVLTACFLINRMPSSSLE 180
Query: 722 NKSPSTLLYQQD-PSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLY 780
N+ P ++++ D Y +VFGC CF L K S R+V CV +GY + KGY Y
Sbjct: 181 NQIPHSIVFPNDLLFYVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYTCY 360
Query: 781 NLTTKTFHISRDVVFNE 797
+ +++S +V F E
Sbjct: 361 FPNMRRYYMSANVTFFE 411
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,722,648
Number of Sequences: 63676
Number of extensions: 1332190
Number of successful extensions: 8341
Number of sequences better than 10.0: 187
Number of HSP's better than 10.0 without gapping: 7826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8216
length of query: 1427
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1318
effective length of database: 5,698,948
effective search space: 7511213464
effective search space used: 7511213464
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0110a.16