TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0110a.10
         (1408 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC231883 weakly similar to UP|Q7QBQ3 (Q7QBQ3) AgCP4056 (Fragment...   135  1e-31
TC205614                                                               58  3e-08
TC213121                                                               52  2e-06
TC206675                                                               34  0.52
BF070487 weakly similar to GP|7230393|gb|A elongation factor 1 a...    31  4.4
BU964899                                                               30  5.7
TC220017 similar to UP|Q7PC53 (Q7PC53) Chitinase B, partial (3%)       30  5.7

>TC231883 weakly similar to UP|Q7QBQ3 (Q7QBQ3) AgCP4056 (Fragment), partial
            (17%)
          Length = 1263

 Score =  135 bits (340), Expect = 1e-31
 Identities = 64/128 (50%), Positives = 87/128 (67%)
 Frame = +1

Query: 499  MYTIEFQKRGLPHAHILLWLSAEYKLNSIAMIDSVICAEVPDPKLYPSLFECVSNYMVHG 558
            M+TIEFQKRGLPH  +LL+L  + +  S   ID +I AE+P  +  P L+  V N+MVHG
Sbjct: 877  MHTIEFQKRGLPHIQLLLFLHPDNQYPSSDEIDHIISAEIPSHEDDPELYTLVQNHMVHG 1056

Query: 559  PCGLSKRESPCMKNGRCAKFFPKKYADVTTFDSDGYPVYRRRNTGVSTNRRGVDLDNGFV 618
            PCG+ +  SPCMK G+C++F+PK +   T  D +GY VYRRRN G +  +  V +DN ++
Sbjct: 1057 PCGILQSHSPCMKEGKCSRFYPKIFLPNTLLDLNGYLVYRRRNDGRTILKNSVIVDNRYL 1236

Query: 619  VPYNPKLL 626
            VPYN KLL
Sbjct: 1237 VPYNAKLL 1260


>TC205614 
          Length = 742

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 29/82 (35%), Positives = 47/82 (56%), Gaps = 3/82 (3%)
 Frame = +2

Query: 641 SNSIKYLFKYINKGVD---RVTLSMSSGRTTQDKPVEDDEIKQYFDCRYLSPCEAVWRIF 697
           SN   ++F YI+   +   R +L +    + +   V    +  Y DC+Y+SPCEA WRIF
Sbjct: 497 SNLFSFIFHYISMVENHN*RTSLKLKDLASIEASQVSFPHM-YYLDCQYISPCEACWRIF 673

Query: 698 QYDIHHKWPPVQKLTYHLPRKQ 719
            + I+ + P V++L +HLP +Q
Sbjct: 674 SFQIYGRIPIVERLYFHLPNEQ 739


>TC213121 
          Length = 713

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 29/77 (37%), Positives = 45/77 (57%)
 Frame = +3

Query: 684 CRYLSPCEAVWRIFQYDIHHKWPPVQKLTYHLPRKQVVLFKENEAIEDVLRRNIVKNSMF 743
           C Y+SP E   +I  + +H + P V+ L +HL  +     KE++ I  +L ++ +K S+F
Sbjct: 30  CIYVSPPETC*KISAFPMHGRAPTVECLYFHLENQ*P*--KESQQIGSMLSKSTIKESIF 203

Query: 744 LAWMDANCKYVHGRQLT 760
            A MD+N  Y HGR LT
Sbjct: 204 TACMDSNKMYHHGRDLT 254


>TC206675 
          Length = 957

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
 Frame = -2

Query: 618 VVPYNPKLLMKYQAHINIEYCNKSNSIKYLFKYINKGVDRVTLSMSSGRTTQ-DKPVEDD 676
           ++ + P+  M   AHINI++ N     K   KY++ G ++        RT++   P  + 
Sbjct: 509 IIHHIPRKKMNIHAHINIDHNNLIMKPKKKSKYLS-GCEQ*WKVWHQNRTSRAQSPCRNS 333

Query: 677 EIKQYFDCRYLSPCEAVWRIFQYDIHHKWPPVQKLTYHLP 716
           +IKQ       +PC    R+ +   H   P +Q   + +P
Sbjct: 332 QIKQQEQVYP*TPCRCCNRLSESLFH*NSPTLQSEAHEVP 213


>BF070487 weakly similar to GP|7230393|gb|A elongation factor 1 alpha {Zea
           mays}, partial (17%)
          Length = 403

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 711 LTYHLPRKQVVLFKENEAIEDVLRRNIVKNS 741
           LTY LPR  V L   N++++D+ RR +  NS
Sbjct: 209 LTYALPRDHVALTVRNDSLDDLNRRFVALNS 301


>BU964899 
          Length = 445

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 13/40 (32%), Positives = 20/40 (49%)
 Frame = +2

Query: 1255 CIQISNKMLVVCSIFKTRLYLLQLWMLLILLIDTRCLYSM 1294
            C+ +  K  V C  F  +L+  +   L + LI T C+ SM
Sbjct: 302  CVNLVQKQWVTCFCFVGKLHFFRSRSLFVFLISTECVSSM 421


>TC220017 similar to UP|Q7PC53 (Q7PC53) Chitinase B, partial (3%)
          Length = 825

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -1

Query: 1133 RDSLLLVVVINHLVAKLLF*VVILDKFYLSSLKVVEQRLS-WL 1174
            R  L++VVVIN +   LLF +VI+   ++SS  +   RLS WL
Sbjct: 180  RQHLIIVVVINFI---LLFTIVIISTIHISSSSIESIRLSNWL 61


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.353    0.158    0.566 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,884,246
Number of Sequences: 63676
Number of extensions: 1102227
Number of successful extensions: 14173
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7606
Number of HSP's successfully gapped in prelim test: 559
Number of HSP's that attempted gapping in prelim test: 6047
Number of HSP's gapped (non-prelim): 9057
length of query: 1408
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1299
effective length of database: 5,698,948
effective search space: 7402933452
effective search space used: 7402933452
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 65 (29.6 bits)