BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0109.1
(295 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227567 similar to UP|Q9MA20 (Q9MA20) T5E21.13, partial (15%) 36 0.018
TC229992 weakly similar to UP|Q8XLG1 (Q8XLG1) Pseudouridylate sy... 36 0.024
TC204653 similar to UP|Q9AT20 (Q9AT20) Histone H1 (Fragment), pa... 35 0.053
TC221955 weakly similar to UP|Q6UAL1 (Q6UAL1) Myosin heavy chain... 35 0.053
TC204654 similar to UP|Q9SLS1 (Q9SLS1) Histone H1, partial (39%) 34 0.069
TC209064 similar to UP|P93166 (P93166) SCOF-1, partial (93%) 34 0.090
TC203295 similar to UP|P93166 (P93166) SCOF-1, partial (52%) 33 0.12
TC226857 similar to UP|Q6QTF1 (Q6QTF1) EARLY FLOWERING 5, partia... 33 0.12
TC215894 similar to UP|Q96569 (Q96569) L-lactate dehydrogenase ... 33 0.12
TC229006 33 0.15
TC214798 homologue to UP|Q8W538 (Q8W538) Ribosomal S15 protein (... 33 0.20
TC216190 homologue to UP|Q8S564 (Q8S564) 4-coumarate:coenzyme A ... 33 0.20
TC226922 similar to UP|Q9LPQ3 (Q9LPQ3) F15H18.14, partial (54%) 33 0.20
TC210508 32 0.26
TC221182 weakly similar to UP|ENAH_MOUSE (Q03173) Enabled protei... 32 0.26
CK606526 32 0.26
TC228321 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (11%) 32 0.26
TC212331 32 0.34
TC204059 similar to UP|Q94ES3 (Q94ES3) Root nodule extensin (Fra... 29 2.2
TC204047 hydroxyproline-rich glycoprotein 29 2.2
>TC227567 similar to UP|Q9MA20 (Q9MA20) T5E21.13, partial (15%)
Length = 1168
Score = 36.2 bits (82), Expect = 0.018
Identities = 36/157 (22%), Positives = 62/157 (38%), Gaps = 4/157 (2%)
Frame = +1
Query: 138 TENKSLMEHVAAETE--NESLTKDVPEETENESLTEDVNESLTEDVGEMEKNESLTTDVA 195
T + + V AE E N+ K V + S+ N+++++++G ++N++ +
Sbjct: 556 TTEEEVSNAVKAEIEKINDEQPKQVIWDGHTGSIGRTANQAMSQNIGSEDQNDASNNEAK 735
Query: 196 SLSLGDDALASPPPQP--KTRRKLVAPQPAVRRSARIKTGEMEKNESLTTDVASLSLGDD 253
+L LG A+PPP+P + R L P R+ +
Sbjct: 736 NL-LGP---AAPPPRPGMPSIRPLPPPPGLALNLPRVPVQYSAPHSG------------- 864
Query: 254 ALASPPPQPKTRRKLAAPQPAAPQPAVRRSARIKTTP 290
AL PPP+P AP P P ++S P
Sbjct: 865 ALPMPPPRPMMPSIRPAPPPPMPMNTGQQSVMAGQPP 975
>TC229992 weakly similar to UP|Q8XLG1 (Q8XLG1) Pseudouridylate synthase,
partial (33%)
Length = 1280
Score = 35.8 bits (81), Expect = 0.024
Identities = 21/73 (28%), Positives = 34/73 (45%)
Frame = +1
Query: 206 SPPPQPKTRRKLVAPQPAVRRSARIKTGEMEKNESLTTDVASLSLGDDALASPPPQPKTR 265
SP P P+T P R S+R +G ++ S ++ SPPP+P+ +
Sbjct: 181 SPNPTPQT-------SPTGRSSSRGSSGARTATSGSNQNLPRAS----SMPSPPPKPEPK 327
Query: 266 RKLAAPQPAAPQP 278
R ++ P+P P P
Sbjct: 328 RTISKPKPPPPPP 366
>TC204653 similar to UP|Q9AT20 (Q9AT20) Histone H1 (Fragment), partial (68%)
Length = 1501
Score = 34.7 bits (78), Expect = 0.053
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Frame = +1
Query: 203 ALASPPPQPKTRRKLVAPQPAVRRSARIKTGEMEKNESLTTDVASLSLGDDALASPPPQP 262
A A P P+PK P+P + +A+ K + K+++ A+ A P P P
Sbjct: 526 APAKPQPKPK-------PKPKPKPAAKAKDTKATKSKAPAKPKAAAKPKAKVPAKPKPAP 684
Query: 263 KTRRKLAA---PQPAAPQP-AVRRSARIKTTP 290
K + AA P+PAA +P + +A+ K P
Sbjct: 685 KPKAAAAAASKPKPAAAKPKGTKPAAKPKPKP 780
Score = 33.1 bits (74), Expect = 0.15
Identities = 28/94 (29%), Positives = 39/94 (40%), Gaps = 4/94 (4%)
Frame = +1
Query: 203 ALASPPPQPKTRRKLVA-PQPAVRRSARIKTGEMEKNESLTTDVASLSLGDDALASPPPQ 261
A A P K + K+ A P+PA + A K A+ G A P P+
Sbjct: 616 APAKPKAAAKPKAKVPAKPKPAPKPKAAAAAASKPK------PAAAKPKGTKPAAKPKPK 777
Query: 262 PKTRRKLAAPQPAA---PQPAVRRSARIKTTPKK 292
P + K AA +PAA +PA +T+P K
Sbjct: 778 PAAKTKAAAAKPAAKPKAKPAKASRTSTRTSPGK 879
Score = 31.6 bits (70), Expect = 0.45
Identities = 46/201 (22%), Positives = 69/201 (33%), Gaps = 19/201 (9%)
Frame = +1
Query: 110 PVFEIIPCECCVTAEEENKSLKENVASETENKSLMEHVAAETENESLTKDVPEETENESL 169
P + P TAE + KE E + K E + + S ++ P E +
Sbjct: 121 PTVAVEPAPEPATAEPPPEE-KEEPKPEAKAKKTKE---PKPKKVSRPRNPPTHPSYEEM 288
Query: 170 TEDVNESLTEDVGEM---------EKNESLTTDVASLSLGDDALASPPPQPKTRRKLVAP 220
+D SL E G EK++ L + L L +KLVA
Sbjct: 289 IKDAITSLKEKTGSSQHAIAKFIEEKHKQLPPNFRKLLLYH------------LKKLVAA 432
Query: 221 QPAVRRSARIKTGEMEKNESLTTDVASLSLGDDALASPPPQPKTRRKLAA---------- 270
V+ K + S ++ A A P P+PK + K AA
Sbjct: 433 GKLVKVKGSFKLPPTRPSASSSSSPAKKKKPAPAKPQPKPKPKPKPKPAAKAKDTKATKS 612
Query: 271 PQPAAPQPAVRRSARIKTTPK 291
PA P+ A + A++ PK
Sbjct: 613 KAPAKPKAAAKPKAKVPAKPK 675
>TC221955 weakly similar to UP|Q6UAL1 (Q6UAL1) Myosin heavy chain class XI E3
protein, partial (6%)
Length = 728
Score = 34.7 bits (78), Expect = 0.053
Identities = 22/76 (28%), Positives = 35/76 (45%)
Frame = +1
Query: 124 EEENKSLKENVASETENKSLMEHVAAETENESLTKDVPEETENESLTEDVNESLTEDVGE 183
E E LK ET + + E+EN+ L + EE +NE L E++ +
Sbjct: 283 EAEEAQLKATQLQETIERLELSLSNLESENQVLCQKALEEPKNEELFEEIKILKDQIANL 462
Query: 184 MEKNESLTTDVASLSL 199
+NESL + A+ +L
Sbjct: 463 QSENESLRSQAAAAAL 510
>TC204654 similar to UP|Q9SLS1 (Q9SLS1) Histone H1, partial (39%)
Length = 766
Score = 34.3 bits (77), Expect = 0.069
Identities = 22/71 (30%), Positives = 32/71 (44%)
Frame = +1
Query: 205 ASPPPQPKTRRKLVAPQPAVRRSARIKTGEMEKNESLTTDVASLSLGDDALASPPPQPKT 264
+S P + K R L++PQP + + K S A+ G A P P+P
Sbjct: 547 SSSPAKKKKARHLLSPQPKPKPKPKPKPAAAAA-ASKPKPAAAKPKGTKPAAKPKPKPAA 723
Query: 265 RRKLAAPQPAA 275
+ K AA +PAA
Sbjct: 724 KTKAAAAKPAA 756
>TC209064 similar to UP|P93166 (P93166) SCOF-1, partial (93%)
Length = 945
Score = 33.9 bits (76), Expect = 0.090
Identities = 38/162 (23%), Positives = 57/162 (34%), Gaps = 8/162 (4%)
Frame = +1
Query: 125 EENKSLKENVASETENKSLMEHVAAETENESLTKDVPEETENESLTEDVNESL---TEDV 181
+ N LK N S N L ++ + L K + + L+ + E+V
Sbjct: 4 QPNPKLKLNSHSHNFNLFLSLSLSLSLPKKWLWKLSTHQQQPPHLSPSTTQLFHGPKENV 183
Query: 182 GEMEKNESLTTDVASLSLGDDALASPPPQP-----KTRRKLVAPQPAVRRSARIKTGEME 236
+ +L SLS +LA+ PP + R +++ P K +
Sbjct: 184 QSVVHATTLRRKSTSLSASSCSLAAAPPAASALHRRNRLQILPPSSVTNAPFATKASPLT 363
Query: 237 KNESLTTDVASLSLGDDALASPPPQPKTRRKLAAPQPAAPQP 278
K T V SL A +PPP P P PA P P
Sbjct: 364 KRSVDTRPVTGNSLPPAAKTNPPPPP--------PPPAPPTP 465
>TC203295 similar to UP|P93166 (P93166) SCOF-1, partial (52%)
Length = 1328
Score = 33.5 bits (75), Expect = 0.12
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Frame = +1
Query: 188 ESLTTDVASLSLGDDALASPPPQ---PKT-RRKLVAPQPAVRRSARIKTGEMEKNESLTT 243
+S + V+S SL SPPP P T R+ P A + K + K+ S+ T
Sbjct: 256 KSTSLSVSSCSLTAAPAVSPPPSLLSPTTIPRRYPPPN*ATNVRSATKPSPLTKH-SVDT 432
Query: 244 DVASLSLGDDALASPPPQPKTRRKLAAPQPAAPQPAVRRS 283
A+ S PPP + RR+ A P + A RRS
Sbjct: 433 RPATGSSAASTTRPPPP*QRVRRRTAVLGPTSAPSAKRRS 552
>TC226857 similar to UP|Q6QTF1 (Q6QTF1) EARLY FLOWERING 5, partial (21%)
Length = 733
Score = 33.5 bits (75), Expect = 0.12
Identities = 33/101 (32%), Positives = 39/101 (37%), Gaps = 17/101 (16%)
Frame = +2
Query: 208 PPQPKTRRKLVAPQPAVRRSARIKTGEMEKNESLTTDVASLSLGDDALASPPPQPK---- 263
PP P ++ P P GE +LT D S G L PPP PK
Sbjct: 47 PPPPPPLQQSQPPPPGTNG------GERRNQSALTDDSPSKEPGQVQLPPPPPPPKPSYV 208
Query: 264 -------TRRKLA--APQPAAPQPA---VRRSARI-KTTPK 291
+R LA P+ A PA VRR A + KT PK
Sbjct: 209 KSAASTVVKRPLAQHTPELTAMVPASVRVRREAAVSKTKPK 331
Score = 32.3 bits (72), Expect = 0.26
Identities = 29/104 (27%), Positives = 35/104 (32%), Gaps = 4/104 (3%)
Frame = +2
Query: 182 GEMEKNESLTTDVASLSLGDDALASPPPQPKTRRKLVAPQPAVRRSARIKTGEMEKNESL 241
GE +LT D S G L PPP PK A V+R T E+
Sbjct: 104 GERRNQSALTDDSPSKEPGQVQLPPPPPPPKPSYVKSAASTVVKRPLAQHTPEL------ 265
Query: 242 TTDVASLSLGDDALASPPPQPKTRRKLAA----PQPAAPQPAVR 281
A P + RR+ A P+PA P P R
Sbjct: 266 -------------TAMVPASVRVRREAAVSKTKPKPAVPGPTSR 358
>TC215894 similar to UP|Q96569 (Q96569) L-lactate dehydrogenase , complete
Length = 1675
Score = 33.5 bits (75), Expect = 0.12
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Frame = +1
Query: 208 PPQPKTRRKLVAPQPAV-----RRSARIKTGEMEKNESLTTDVASLSLGDDALASPPPQP 262
PP+P + + PA RR + ++T + S T +S + + PP P
Sbjct: 250 PPRPSATTRSPSSAPATWEWPSRRPSSLRTSPTSSSSSTPTPTSSAARCSTSSTPPPSSP 429
Query: 263 KTRRKLAAPQPAAPQPAVRRSARIKTTPKK 292
R + P P P P SA P +
Sbjct: 430 APR---STPPPTPPSPPAPTSASSPPAPAR 510
>TC229006
Length = 991
Score = 33.1 bits (74), Expect = 0.15
Identities = 29/108 (26%), Positives = 46/108 (41%), Gaps = 1/108 (0%)
Frame = +2
Query: 84 LHVSFNKLKNEIKTGFAKQHNFKGCVPVFEIIPCECCVTAEEENKSLKENVASETENKSL 143
+H+ +NK + T F K HN + P E T +E++K ++E A K L
Sbjct: 338 IHIKYNKSGKWVITKFVKDHNHP-----LVVSPREARQTMDEKDKKIQELTAELRHKKRL 502
Query: 144 MEHVAAETENESLTKDVP-EETENESLTEDVNESLTEDVGEMEKNESL 190
T E LT + E NE L+ ++ + ++ E E E L
Sbjct: 503 -----CATYQEQLTSFMKIVEEHNEKLSAKIHH-VVNNLKEFESIEEL 628
>TC214798 homologue to UP|Q8W538 (Q8W538) Ribosomal S15 protein (Fragment),
complete
Length = 1181
Score = 32.7 bits (73), Expect = 0.20
Identities = 20/47 (42%), Positives = 22/47 (46%)
Frame = +2
Query: 243 TDVASLSLGDDALASPPPQPKTRRKLAAPQPAAPQPAVRRSARIKTT 289
T+VA S G L PP + T R L P P P P V SA K T
Sbjct: 59 TEVAWCSSGAGGLDGPPYEGPTPRPLPIPPPLRPPPLVPNSAPGKET 199
>TC216190 homologue to UP|Q8S564 (Q8S564) 4-coumarate:coenzyme A ligase ,
complete
Length = 1943
Score = 32.7 bits (73), Expect = 0.20
Identities = 26/89 (29%), Positives = 33/89 (36%), Gaps = 1/89 (1%)
Frame = +1
Query: 205 ASPPPQPKTRRKLVAPQPAVRRSARIKTGEMEKNESLTTDVASLSLGDDALASPPPQPKT 264
A P P P + L A PA +SA + + S A A P P +
Sbjct: 178 ARPSPTPTSTSLLAASPPASTKSASARV--------------TSSCSSYATARSSPSPSS 315
Query: 265 RRKLAAPQPAAPQPAV-RRSARIKTTPKK 292
AP P P+ RRS R K P+K
Sbjct: 316 APPTVAPSSPQPTPSTRRRSLRSKRRPRK 402
>TC226922 similar to UP|Q9LPQ3 (Q9LPQ3) F15H18.14, partial (54%)
Length = 1190
Score = 32.7 bits (73), Expect = 0.20
Identities = 28/89 (31%), Positives = 34/89 (37%), Gaps = 5/89 (5%)
Frame = +2
Query: 207 PPPQPKTRRKLVAPQPAVRRSARIKTGEMEKNESLTTDVASLSLGDDALASPPPQPKTRR 266
PPP P P P R S SL T+ A+ S A+ PP P TR
Sbjct: 167 PPPPPNQPPATPLPPPTSRSSP-----------SLATETAAPSTKS---ATRPPPPPTRS 304
Query: 267 KLAAPQP-----AAPQPAVRRSARIKTTP 290
+ + P P AAP SA + T P
Sbjct: 305 RSSTPTPTPPGAAAPSRKPPSSAALPTAP 391
>TC210508
Length = 413
Score = 32.3 bits (72), Expect = 0.26
Identities = 30/105 (28%), Positives = 39/105 (36%), Gaps = 18/105 (17%)
Frame = +3
Query: 205 ASPPPQPKTR---RKLVAPQPAVRRSARIKTGEMEKNES---------LTTDVASLSLGD 252
+SPPP P TR R P P R T + LTT +S
Sbjct: 21 SSPPPSPTTRT*ARSSARPSPPASRKPSTTTSATSRGRKSQRSKRCARLTTRTSSSPSTT 200
Query: 253 DALASP------PPQPKTRRKLAAPQPAAPQPAVRRSARIKTTPK 291
L+SP PP P T + ++ A P SAR T+P+
Sbjct: 201 SDLSSPTSIRSSPPSP-TPTRASSTSRARSSPRSTPSARRATSPR 332
>TC221182 weakly similar to UP|ENAH_MOUSE (Q03173) Enabled protein homolog
(NPC derived proline-rich protein 1) (NDPP-1), partial
(5%)
Length = 446
Score = 32.3 bits (72), Expect = 0.26
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 258 PPPQPKTRRKLAAPQPAAPQPAVRRSARIKTTPK 291
PPP P K A P P P PA ++A KTT +
Sbjct: 126 PPPLPPLPPKPATPPPTPPPPAAAQAAAPKTTTR 227
>CK606526
Length = 513
Score = 32.3 bits (72), Expect = 0.26
Identities = 27/87 (31%), Positives = 36/87 (41%)
Frame = +1
Query: 206 SPPPQPKTRRKLVAPQPAVRRSARIKTGEMEKNESLTTDVASLSLGDDALASPPPQPKTR 265
+P P PK ++ LV PQP + ++ +KTGE PP PK
Sbjct: 94 NPGPPPKGKKPLVPPQPQI-KNPPLKTGE----------------------GGPPPPK-- 198
Query: 266 RKLAAPQPAAPQPAVRRSARIKTTPKK 292
K AP+ P P V K +PKK
Sbjct: 199 -KFPAPRKQPPPPQVPP----KDSPKK 264
Score = 29.6 bits (65), Expect = 1.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 257 SPPPQPKTRRKLAAPQPAAPQPAVRRSARIKTTPKKF 293
+P P PK ++ L PQP P ++ PKKF
Sbjct: 94 NPGPPPKGKKPLVPPQPQIKNPPLKTGEGGPPPPKKF 204
>TC228321 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (11%)
Length = 940
Score = 32.3 bits (72), Expect = 0.26
Identities = 18/53 (33%), Positives = 30/53 (55%)
Frame = +2
Query: 237 KNESLTTDVASLSLGDDALASPPPQPKTRRKLAAPQPAAPQPAVRRSARIKTT 289
++ES T +ASL+ + PPP P+T P+ ++P P+ RRS R + +
Sbjct: 272 RSESSATSLASLARASPP-SRPPPTPQT------PKRSSPSPSARRSTRSRAS 409
Score = 31.2 bits (69), Expect = 0.58
Identities = 17/44 (38%), Positives = 27/44 (60%)
Frame = +2
Query: 186 KNESLTTDVASLSLGDDALASPPPQPKTRRKLVAPQPAVRRSAR 229
++ES T +ASL+ + PPP P+T ++ +P P+ RRS R
Sbjct: 272 RSESSATSLASLARASPP-SRPPPTPQTPKRS-SPSPSARRSTR 397
>TC212331
Length = 801
Score = 32.0 bits (71), Expect = 0.34
Identities = 17/36 (47%), Positives = 18/36 (49%), Gaps = 1/36 (2%)
Frame = +1
Query: 256 ASPPPQPKTRRKLAAPQPAAPQPAVRR-SARIKTTP 290
ASPPP P T QP P+P RR S R TP
Sbjct: 142 ASPPPAPPTPSSAKTTQPVQPEPPCRRASLRSTFTP 249
>TC204059 similar to UP|Q94ES3 (Q94ES3) Root nodule extensin (Fragment),
partial (96%)
Length = 853
Score = 29.3 bits (64), Expect = 2.2
Identities = 20/73 (27%), Positives = 25/73 (33%)
Frame = +2
Query: 206 SPPPQPKTRRKLVAPQPAVRRSARIKTGEMEKNESLTTDVASLSLGDDALASPPPQPKTR 265
SPPP PK K +P P V++ SPPP PK
Sbjct: 119 SPPPPPKKPYKYPSPPPPVKKP--------------------YPHPHPVYHSPPPPPKKP 238
Query: 266 RKLAAPQPAAPQP 278
K +P P +P
Sbjct: 239 YKYPSPPPPVKKP 277
>TC204047 hydroxyproline-rich glycoprotein
Length = 887
Score = 29.3 bits (64), Expect = 2.2
Identities = 20/73 (27%), Positives = 25/73 (33%)
Frame = +1
Query: 206 SPPPQPKTRRKLVAPQPAVRRSARIKTGEMEKNESLTTDVASLSLGDDALASPPPQPKTR 265
SPPP PK K +P P V++ SPPP PK
Sbjct: 97 SPPPPPKKPYKYPSPPPPVKKP--------------------YPHPHPVYHSPPPPPKKP 216
Query: 266 RKLAAPQPAAPQP 278
K +P P +P
Sbjct: 217 YKYPSPPPPVKKP 255
Score = 29.3 bits (64), Expect = 2.2
Identities = 20/73 (27%), Positives = 25/73 (33%)
Frame = +1
Query: 206 SPPPQPKTRRKLVAPQPAVRRSARIKTGEMEKNESLTTDVASLSLGDDALASPPPQPKTR 265
SPPP PK K +P P V++ SPPP PK
Sbjct: 4 SPPPPPKKPYKYPSPPPPVKK--------------------PYPHPHPVYHSPPPPPKKP 123
Query: 266 RKLAAPQPAAPQP 278
K +P P +P
Sbjct: 124 YKYPSPPPPVKKP 162
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.309 0.127 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,598,214
Number of Sequences: 63676
Number of extensions: 210257
Number of successful extensions: 2756
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 1998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2654
length of query: 295
length of database: 12,639,632
effective HSP length: 97
effective length of query: 198
effective length of database: 6,463,060
effective search space: 1279685880
effective search space used: 1279685880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0109.1