BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0106.9
(458 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC212585 159 4e-63
TC225879 similar to GB|AAP88348.1|32815927|BT009714 At3g12630 {A... 32 0.46
BG790115 30 1.7
TC225878 similar to GB|AAP88348.1|32815927|BT009714 At3g12630 {A... 30 3.0
TC221781 30 3.0
TC222529 homologue to UP|Q8I3F3 (Q8I3F3) Early transcribed membr... 29 3.9
BF596193 29 5.1
TC205264 similar to GB|AAO39931.1|28372898|BT003703 At4g28730 {A... 28 6.6
BF068220 similar to PIR|T02250|T022 chlorophyll a/b-binding prot... 28 6.6
TC207073 similar to UP|Q9LJE2 (Q9LJE2) Lysyl-tRNA synthetase, pa... 28 6.6
TC234818 similar to UP|O22082 (O22082) C2H2 zinc-finger protein ... 28 8.6
TC218656 28 8.6
>TC212585
Length = 1016
Score = 159 bits (403), Expect(2) = 4e-63
Identities = 81/100 (81%), Positives = 88/100 (88%)
Frame = +1
Query: 277 LGNLGPLVICTKVTNSIVLLDPFTLRHCFLDASQYWRASFKSLLTSRQLVEYVVLDVEEV 336
LGN+GPLVICTKVT+SI LLDPFTLRHCF+DA QYWRASFKSLLTSRQLVEY+VLDVE V
Sbjct: 7 LGNIGPLVICTKVTSSIALLDPFTLRHCFIDADQYWRASFKSLLTSRQLVEYIVLDVETV 186
Query: 337 VPSEVVTVGGTKYVLAVAQVARVSDFGKNDTIFSIKTHLG 376
S VT+GGTKY LA AQVARVSDFGKNDTIF+I+ G
Sbjct: 187 --SSEVTIGGTKYRLADAQVARVSDFGKNDTIFNIQDSSG 300
Score = 100 bits (249), Expect(2) = 4e-63
Identities = 56/89 (62%), Positives = 62/89 (68%), Gaps = 1/89 (1%)
Frame = +2
Query: 370 SIKTHLGHLLNPGDYALGY-DLYGANCNDIELDKYKGGDLPHAILVKKSYVEKRLKKRGK 428
+ KTHLGHLLNPGDYA ++G L KG +P AIL+KKSY EK KKRGK
Sbjct: 281 TFKTHLGHLLNPGDYASWL*SVWG****TWNLTSNKG-HIPEAILIKKSYEEKHQKKRGK 457
Query: 429 PRSWKLKSLNMEIDDKGRTDPDKMSSEYE 457
RSWKLKSL ME+DDKGR D DKM SEYE
Sbjct: 458 LRSWKLKSLEMEVDDKGRVDQDKMVSEYE 544
>TC225879 similar to GB|AAP88348.1|32815927|BT009714 At3g12630 {Arabidopsis
thaliana;} , partial (57%)
Length = 1018
Score = 32.3 bits (72), Expect = 0.46
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 10 EIEAGMFSVPQTICSVLCCM-CGIPMQPNAANMCVKCLSSQEDITEG 55
E E F VP+TI LC CG+ P NMC KC ++ T G
Sbjct: 462 EKEETDFKVPETI--TLCVNNCGVTGNPATNNMCQKCFTASTATTSG 596
>BG790115
Length = 422
Score = 30.4 bits (67), Expect = 1.7
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +1
Query: 31 GIPMQPNAANMCVKCLSSQEDITEGLQKHINIFHCPQCESYFQHPKT----WIKHLKPES 86
GIP PN+ N + Q++ TE LQ IN E + + P + W+ +K +
Sbjct: 124 GIPSSPNSGNRSTEFPQQQQEPTEALQVVIN----EDGEKFEEEPNSPTSEWVVTIKEKL 291
Query: 87 DE 88
DE
Sbjct: 292 DE 297
>TC225878 similar to GB|AAP88348.1|32815927|BT009714 At3g12630 {Arabidopsis
thaliana;} , partial (66%)
Length = 995
Score = 29.6 bits (65), Expect = 3.0
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 10 EIEAGMFSVPQTICSVLCCM-CGIPMQPNAANMCVKCLSS 48
E E F VP+TI LC CG+ P NMC KC ++
Sbjct: 171 EKEETDFKVPETI--TLCVNNCGVTGNPATNNMCQKCFTA 284
>TC221781
Length = 1116
Score = 29.6 bits (65), Expect = 3.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 393 ANCNDIELDKYKGGDLPHAILVK 415
+ CN I LD Y+ G LPH+ L+K
Sbjct: 797 SKCNFISLDAYESGLLPHSCLLK 729
>TC222529 homologue to UP|Q8I3F3 (Q8I3F3) Early transcribed membrane protein,
partial (6%)
Length = 196
Score = 29.3 bits (64), Expect = 3.9
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = +1
Query: 397 DIELDKYKGGDLPHAILVKKSYVEKRLKKRGKPRSWKLKSLNMEIDDK 444
D E + +G + L + +++R KK +WK+ +LN EID K
Sbjct: 19 DEEEEDSEGSSVQRPYLSEAWKIQERRKKENPLMNWKIPALNNEIDIK 162
>BF596193
Length = 436
Score = 28.9 bits (63), Expect = 5.1
Identities = 11/28 (39%), Positives = 14/28 (49%)
Frame = +1
Query: 20 QTICSVLCCMCGIPMQPNAANMCVKCLS 47
+T+CS CCMC I N C L+
Sbjct: 184 ETLCSYCCCMCCIQCCTRINNQCATALT 267
>TC205264 similar to GB|AAO39931.1|28372898|BT003703 At4g28730 {Arabidopsis
thaliana;} , partial (62%)
Length = 728
Score = 28.5 bits (62), Expect = 6.6
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Frame = -3
Query: 239 VSHDTKSNNYNYRYTFSVEIS-PICREDL-----ICLPHHVALSLGNLGP 282
++ D+K ++ +RY+FSV + P+C + +C P ++ +L N GP
Sbjct: 480 LAFDSKGSSSPFRYSFSVSVQPPMCLPPINTFGTVCCPVILSNTLCNCGP 331
>BF068220 similar to PIR|T02250|T022 chlorophyll a/b-binding protein CP26
precursor - maize, partial (26%)
Length = 232
Score = 28.5 bits (62), Expect = 6.6
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 381 PGDYALGYDLYGANCNDIELDKYKGGDLPHA 411
PG Y GYD YG N + KY+ DL HA
Sbjct: 53 PGYY--GYDPYGLNLKTEDFAKYQAFDLIHA 139
>TC207073 similar to UP|Q9LJE2 (Q9LJE2) Lysyl-tRNA synthetase, partial (52%)
Length = 1234
Score = 28.5 bits (62), Expect = 6.6
Identities = 19/53 (35%), Positives = 23/53 (42%), Gaps = 1/53 (1%)
Frame = -2
Query: 302 RHCFLDASQY-WRASFKSLLTSRQLVEYVVLDVEEVVPSEVVTVGGTKYVLAV 353
RH L Y W S +TSR L E+V +PS + GG Y AV
Sbjct: 1050 RHSDLQTYHYCWTLSTGKGITSRMLGEFVKSITSLSIPSPIPEAGGIPYSKAV 892
>TC234818 similar to UP|O22082 (O22082) C2H2 zinc-finger protein ZPT2-10,
partial (19%)
Length = 684
Score = 28.1 bits (61), Expect = 8.6
Identities = 16/46 (34%), Positives = 18/46 (38%)
Frame = +3
Query: 27 CCMCGIPMQPNAANMCVKCLSSQEDITEGLQKHINIFHCPQCESYF 72
C CG + + A L S I EG NIF CP C F
Sbjct: 222 CQSCGKTFRSSRA------LGSHRSICEGSGNDSNIFQCPFCSKVF 341
>TC218656
Length = 827
Score = 28.1 bits (61), Expect = 8.6
Identities = 14/47 (29%), Positives = 24/47 (50%), Gaps = 4/47 (8%)
Frame = -1
Query: 23 CSVLCCMCGIPMQPNAANMC----VKCLSSQEDITEGLQKHINIFHC 65
CS+L CMC + + NA + + L+ E T G+ + + +F C
Sbjct: 206 CSILHCMCSLFLAANALRIAS*WLLLLLTKSEPATLGMMELLILFWC 66
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,137,971
Number of Sequences: 63676
Number of extensions: 360597
Number of successful extensions: 1914
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1912
length of query: 458
length of database: 12,639,632
effective HSP length: 100
effective length of query: 358
effective length of database: 6,272,032
effective search space: 2245387456
effective search space used: 2245387456
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0106.9