BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0106.7
(717 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC218247 similar to UP|Q9FFV0 (Q9FFV0) Similarity to GTPase acti... 174 1e-43
TC216783 similar to PIR|T45840|T45840 GTPase activating-like pro... 67 7e-25
TC224940 similar to UP|Q6ZFZ1 (Q6ZFZ1) GTPase activating protein... 108 6e-24
TC224866 similar to UP|Q6ZFZ1 (Q6ZFZ1) GTPase activating protein... 94 2e-19
TC232530 similar to UP|Q94BY9 (Q94BY9) AT5g53570/MNC6_11, partia... 62 7e-10
TC218736 similar to UP|CV4L_HUMAN (Q9NU19) TBC1 domain family pr... 55 1e-07
TC211422 similar to PIR|T45840|T45840 GTPase activating-like pro... 49 8e-06
BF425319 45 1e-04
TC224893 43 4e-04
BI968908 42 0.001
TC210641 weakly similar to UP|Q6PUR3 (Q6PUR3) C22orf4-like prote... 37 0.023
TC215079 similar to UP|Q6H730 (Q6H730) Ribosomal protein L12-lik... 33 0.58
BI699898 32 0.75
BU548754 homologue to GP|22946224|gb| CG31868-PA {Drosophila mel... 32 1.3
AW156525 32 1.3
TC222026 weakly similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell... 32 1.3
TC231718 similar to UP|Q9FRY9 (Q9FRY9) Response regulator 6, par... 32 1.3
TC220924 similar to UP|Q6NLP5 (Q6NLP5) At2g20440, partial (31%) 31 2.2
TC207341 similar to UP|Q9LQY6 (Q9LQY6) T24P13.4, partial (11%) 30 3.7
CD400529 30 4.9
>TC218247 similar to UP|Q9FFV0 (Q9FFV0) Similarity to GTPase activating
protein, partial (77%)
Length = 1418
Score = 174 bits (441), Expect = 1e-43
Identities = 94/214 (43%), Positives = 127/214 (58%), Gaps = 1/214 (0%)
Frame = +2
Query: 358 VGEDRVSEWLWTLHRIVVDVVRTDSHLDFYEDTRNLARMSDILAVYAWVDPATGYCQGMS 417
V + V +W+ TLH+I +DVVRTD L FYE NL+++ DILAVYAW+D GY QGM
Sbjct: 296 VTDKTVVQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYGQGMC 475
Query: 418 DLLSPFVVIFEDNADAFWCFEMLLRRMRENFQ-MEGPTRVMKQLRELWHILELADKEMFA 476
DL SP +++ +D ADAFWCFE L+RR+R NF+ E V QL L + ++ D ++
Sbjct: 476 DLCSPMIILLDDEADAFWCFERLMRRLRGNFRCTESSVGVAAQLSNLASVTQVIDPKLHK 655
Query: 477 HLSKIGAESLHFAFRMLLVLFRRELSFNEALSMWEMMWAADFDESLAYDLEVNCLEALDI 536
HL +G FAFRML+VLFRRE SF ++L +WEMMWA ++D L L
Sbjct: 656 HLEHLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDL----------FLMY 805
Query: 537 HLPRDSSNDLREEVADSDDGSVKSGSQSNHNEND 570
+P+ +S E A+ G KS Q E +
Sbjct: 806 EMPQSAS-----EKAEGSKGKTKSIRQCGKYERE 892
Score = 47.8 bits (112), Expect = 2e-05
Identities = 22/47 (46%), Positives = 29/47 (60%)
Frame = +2
Query: 88 EVWEFLLGCYALSSTAEYRRRLRAARREHYSDLVKQCQTMHSSVGTG 134
EVWEFLLGCY ST E R ++R RR Y+ ++C + VG+G
Sbjct: 2 EVWEFLLGCYDPKSTFEERDQIRQRRRMQYATWKEECHQLFPLVGSG 142
>TC216783 similar to PIR|T45840|T45840 GTPase activating-like protein -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(46%)
Length = 1379
Score = 67.0 bits (162), Expect(2) = 7e-25
Identities = 33/68 (48%), Positives = 43/68 (62%)
Frame = +3
Query: 382 SHLDFYEDTRNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLL 441
SHLD + AR+ IL YA DP GYCQGMSDLLSP V + ++ +AFWCF +
Sbjct: 123 SHLDASR-IFHAARLVAILEAYALYDPEIGYCQGMSDLLSPIVSVIPEDHEAFWCFVGFM 299
Query: 442 RRMRENFQ 449
++ +NFQ
Sbjct: 300 KKAPQNFQ 323
Score = 65.9 bits (159), Expect(2) = 7e-25
Identities = 30/74 (40%), Positives = 50/74 (67%)
Frame = +1
Query: 442 RRMRENFQMEGPTRVMKQLRELWHILELADKEMFAHLSKIGAESLHFAFRMLLVLFRREL 501
+R+R+ F+++ + +QL + I++ D +F HL K+ AE F +RM++VLFRREL
Sbjct: 301 KRLRKIFRLD-EVGIRRQLDIVAKIIKFKDGHLFRHLQKLQAEDCFFVYRMVVVLFRREL 477
Query: 502 SFNEALSMWEMMWA 515
+F + L +WE+MWA
Sbjct: 478 TFEQTLCLWEVMWA 519
>TC224940 similar to UP|Q6ZFZ1 (Q6ZFZ1) GTPase activating protein-like, partial
(66%)
Length = 1783
Score = 108 bits (271), Expect = 6e-24
Identities = 54/141 (38%), Positives = 83/141 (58%), Gaps = 2/141 (1%)
Frame = +2
Query: 376 DVVRTDSHLDFYE--DTRNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVIFEDNADA 433
DVVRTD L FYE D N+ + DIL Y++ + GYCQGMSDLLSP + + +D ++A
Sbjct: 986 DVVRTDRSLAFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMDDESEA 1165
Query: 434 FWCFEMLLRRMRENFQMEGPTRVMKQLRELWHILELADKEMFAHLSKIGAESLHFAFRML 493
FWCF L+ R+ NF + + QL L ++EL D + + + + F FR +
Sbjct: 1166 FWCFVALMERLGPNFNRD-QNGMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWI 1342
Query: 494 LVLFRRELSFNEALSMWEMMW 514
L+ F+RE + + + +WE++W
Sbjct: 1343 LIQFKREFEYEKTMRLWEVLW 1405
Score = 53.1 bits (126), Expect = 4e-07
Identities = 26/80 (32%), Positives = 42/80 (52%)
Frame = +2
Query: 51 LKPDKWQALSDSEGKVLGFRKALKLIVLGGVDPSIRPEVWEFLLGCYALSSTAEYRRRLR 110
L ++W DSEG+V K + GG+D ++ EVW LLG Y ST R L+
Sbjct: 695 LGSEEWNTFMDSEGRVTDSEALRKRVFYGGLDHKLQNEVWGLLLGYYPYESTYAEREFLK 874
Query: 111 AARREHYSDLVKQCQTMHSS 130
+ ++ Y ++ Q Q++ S+
Sbjct: 875 SVKKLEYENIKNQWQSISSA 934
>TC224866 similar to UP|Q6ZFZ1 (Q6ZFZ1) GTPase activating protein-like,
partial (31%)
Length = 838
Score = 94.4 bits (233), Expect = 2e-19
Identities = 43/127 (33%), Positives = 74/127 (57%)
Frame = +3
Query: 388 EDTRNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLLRRMREN 447
+D N+ + DIL Y++ + GYCQGMSDLLSP + + ++ ++AFWCF L+ R+ N
Sbjct: 33 DDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMDNESEAFWCFVALMERLGPN 212
Query: 448 FQMEGPTRVMKQLRELWHILELADKEMFAHLSKIGAESLHFAFRMLLVLFRRELSFNEAL 507
F + + QL L ++EL D + + + + F FR +L+ F+RE + + +
Sbjct: 213 FNRD-QNGMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWILIQFKREFEYEKTM 389
Query: 508 SMWEMMW 514
+WE++W
Sbjct: 390 RLWEVLW 410
>TC232530 similar to UP|Q94BY9 (Q94BY9) AT5g53570/MNC6_11, partial (11%)
Length = 512
Score = 62.4 bits (150), Expect = 7e-10
Identities = 50/152 (32%), Positives = 71/152 (45%), Gaps = 9/152 (5%)
Frame = +3
Query: 71 KALKLIVLGGVDPSIRPEVWEFLLGCYALSSTAEYRRRLRAARREHYSDLVKQCQTM--H 128
K LK + GGVDPSIR EVW FLLG Y L ST E R +R R+ Y L +QC+ + H
Sbjct: 3 KFLKRVRSGGVDPSIRAEVWPFLLGVYDLDSTKEERDAIRTQNRKEYEKLRRQCRQLLKH 182
Query: 129 SS-------VGTGSLAYVVGSKVMDMRTSSKLEREMKGKTSTSNDNNIEVGKYNERSIIC 181
S+ +G S S + D + S E + S S++ +Y++
Sbjct: 183 SNGNFKLNEIGEISYEGDSASFIQDYGSPSS-EDATSARESLSSEERCPDAEYSDDP--- 350
Query: 182 TEAAKEGHHESSNGSVDLASLRASTDGATYDS 213
+ A EG + + D ++L TD DS
Sbjct: 351 SSALLEGDDAPNISNADASAL--DTDSTDSDS 440
>TC218736 similar to UP|CV4L_HUMAN (Q9NU19) TBC1 domain family protein
C6orf197, partial (23%)
Length = 1212
Score = 55.1 bits (131), Expect = 1e-07
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 25/119 (21%)
Frame = +2
Query: 370 LHRIVVDVVRTDSHLDFYEDTRNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVIF-- 427
LH+I +D RT + F++ + + IL +A PA+GY QG++DL++PF+V+F
Sbjct: 689 LHQIGIDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLS 868
Query: 428 ---------------------EDNADAFWCFEMLLRRMREN--FQMEGPTRVMKQLREL 463
AD +WC LL M+++ F G R++ +L+EL
Sbjct: 869 EHFEGDINNWSMSDLSSDIISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKEL 1045
Score = 29.3 bits (64), Expect = 6.4
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 73 LKLIVLGGVDPSIRPEVWEFLLGCYALSSTAEYRRRLRAARREHYSDLVKQ 123
L+ + GV ++RP+VW LLG YA ++ LR R E Y D + Q
Sbjct: 494 LRELAWSGVPDNMRPKVWRLLLG-YAPPNSDRREGVLRRKRLE-YLDCISQ 640
>TC211422 similar to PIR|T45840|T45840 GTPase activating-like protein -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(23%)
Length = 519
Score = 48.9 bits (115), Expect = 8e-06
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +2
Query: 480 KIGAESLHFAFRMLLVLFRRELSFNEALSMWEMMWA 515
K+ AE F +RM++V+FRREL+F + L +WE+MWA
Sbjct: 2 KLQAEDCFFVYRMVVVMFRRELTFEQTLCLWEVMWA 109
>BF425319
Length = 412
Score = 45.1 bits (105), Expect = 1e-04
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Frame = +1
Query: 431 ADAFWCFEMLLRRMRENFQMEGPTRVM---KQLRELWHILELADKEMFAHL---SKIGAE 484
AD F+CF LL R ++NF + ++ + L +L+ D+E++ HL +K+ +
Sbjct: 10 ADTFFCFVELLSRFQDNFCQQLDNSIVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQ 189
Query: 485 SLHFAFRMLLVLFRRELSFNEALSMWEMM 513
+AFR +++L +E +F + L +W+++
Sbjct: 190 --FYAFRWIILLLTQEFNFADILHIWDVI 270
>TC224893
Length = 705
Score = 43.1 bits (100), Expect = 4e-04
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Frame = +1
Query: 431 ADAFWCFEMLLRRMRENFQMEGPTRVM---KQLRELWHILELADKEMFAHL---SKIGAE 484
ADA +CF LL R+NF + V+ + L +L D+E++ HL SK+ +
Sbjct: 46 ADAVFCFVELLSGFRDNFVQQLDNSVVGIRATITRLSQLLREHDEELWRHLEVTSKVNPQ 225
Query: 485 SLHFAFRMLLVLFRRELSFNEALSMWEMM 513
+AFR + +L +E +F ++L +W+ +
Sbjct: 226 --FYAFRWITLLLTQEFNFADSLHIWDTL 306
>BI968908
Length = 394
Score = 42.0 bits (97), Expect = 0.001
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = -2
Query: 431 ADAFWCFEMLLRRMRENF---QMEGPTRVMKQLRELWHILELADKEMFAHL---SKIGAE 484
ADAF+CF LL R+NF + + L +L D+E++ HL SK+ +
Sbjct: 387 ADAFFCFVELLSGFRDNFVHHLANSVVGIRXTITRLSQLLRDHDEELWRHLEVTSKVNPQ 208
Query: 485 SLHFAFRMLLVLFRRELSFNEALSMWEMM 513
+AFR + +L +E +F L W+ +
Sbjct: 207 --FYAFRWITLLLTQEFNFAATLXXWDTL 127
>TC210641 weakly similar to UP|Q6PUR3 (Q6PUR3) C22orf4-like protein, partial
(14%)
Length = 707
Score = 37.4 bits (85), Expect = 0.023
Identities = 24/78 (30%), Positives = 39/78 (49%), Gaps = 2/78 (2%)
Frame = +1
Query: 436 CFEMLLRRMREN--FQMEGPTRVMKQLRELWHILELADKEMFAHLSKIGAESLHFAFRML 493
C LL M+++ F G R++ +L+EL + D + H+ + G E L FAFR
Sbjct: 1 CLSKLLDSMQDHYTFAQPGIQRLVFKLKEL---VRRIDDPVSNHMEEQGLEFLQFAFRWF 171
Query: 494 LVLFRRELSFNEALSMWE 511
L RE+ F+ +W+
Sbjct: 172 NCLLIREIPFHLVTRLWD 225
>TC215079 similar to UP|Q6H730 (Q6H730) Ribosomal protein L12-like protein,
partial (9%)
Length = 711
Score = 32.7 bits (73), Expect = 0.58
Identities = 12/38 (31%), Positives = 23/38 (59%)
Frame = +1
Query: 667 CFYRVINYYYESHNCYTPITLFLLFMFILSGVEYLLGL 704
C +++ + ESH+C++P +F +L G +LLG+
Sbjct: 535 CLIKIVLAFRESHSCFSP*NTLGVFTVLLLGSSFLLGM 648
>BI699898
Length = 421
Score = 32.3 bits (72), Expect = 0.75
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 23/64 (35%)
Frame = +3
Query: 408 PATGYCQGMSDLLSPFVVIF--------EDN---------------ADAFWCFEMLLRRM 444
PA+GY QG++DL++ F+V+F DN D +WC L+ M
Sbjct: 225 PASGYVQGINDLVTLFLVVF*LEYFEGDIDNWSMSDLSSDVISNIEVDCYWCLSKLIDGM 404
Query: 445 RENF 448
++++
Sbjct: 405 QDHY 416
>BU548754 homologue to GP|22946224|gb| CG31868-PA {Drosophila melanogaster},
partial (1%)
Length = 496
Score = 31.6 bits (70), Expect = 1.3
Identities = 17/67 (25%), Positives = 31/67 (45%), Gaps = 2/67 (2%)
Frame = -2
Query: 304 HSTNSEIEVASPDEDEPEFPSDNAVYEAQMVNQLKISDVPQPARISAAMSQE--WPVGED 361
H NSE+ V D+D+ D+A E + V + ++ Q ++ +AA W +
Sbjct: 426 HKPNSEVRVCDDDDDD----DDDADEETKTVKEFIDLEILQRSKRNAARDSRTFWNAATE 259
Query: 362 RVSEWLW 368
+ +W W
Sbjct: 258 KFKKWKW 238
>AW156525
Length = 338
Score = 31.6 bits (70), Expect = 1.3
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +3
Query: 398 DILAVYAWVDPATGYCQGMSDLLSPFVVIF 427
+IL +A A+GY G++DL++PF+V+F
Sbjct: 3 EILNTWAIRHAASGYVHGINDLVTPFLVVF 92
>TC222026 weakly similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell wall
protein gp1 precursor (Hydroxyproline-rich glycoprotein
1), partial (8%)
Length = 514
Score = 31.6 bits (70), Expect = 1.3
Identities = 17/67 (25%), Positives = 31/67 (45%), Gaps = 2/67 (2%)
Frame = +1
Query: 304 HSTNSEIEVASPDEDEPEFPSDNAVYEAQMVNQLKISDVPQPARISAAMSQE--WPVGED 361
H NSE+ V D+D+ D+A E + V + ++ Q ++ +AA W +
Sbjct: 178 HKPNSEVRVCDDDDDD----DDDADEETKTVKEFIDLEILQRSKRNAARDSRTFWNAATE 345
Query: 362 RVSEWLW 368
+ +W W
Sbjct: 346 KFKKWKW 366
>TC231718 similar to UP|Q9FRY9 (Q9FRY9) Response regulator 6, partial (32%)
Length = 650
Score = 31.6 bits (70), Expect = 1.3
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +3
Query: 519 DESLAYDLEVNCLEALDIHLPRDSSNDLREEVA----DSDDGSVKSGSQSNHNENDNDNT 574
+E L L+++ L+ L + + N +E A DSD+ +V + + +N N N+N+N
Sbjct: 228 EEFLLKPLQLSDLDKLQPYFLKSVDNSCEKESANSSIDSDNDNVINNNSNNSNSNNNNNN 407
Query: 575 KASQQ 579
S++
Sbjct: 408 SISKR 422
>TC220924 similar to UP|Q6NLP5 (Q6NLP5) At2g20440, partial (31%)
Length = 791
Score = 30.8 bits (68), Expect = 2.2
Identities = 29/162 (17%), Positives = 54/162 (32%)
Frame = +3
Query: 499 RELSFNEALSMWEMMWAADFDESLAYDLEVNCLEALDIHLPRDSSNDLREEVADSDDGSV 558
RE SF + L +WE+MWA +++ + E D D
Sbjct: 3 REFSFADTLYLWELMWAMEYNPYIFTKYE------------------------DPDRAKT 110
Query: 559 KSGSQSNHNENDNDNTKASQQSNHENTDVSVWDAKLKSLSSYPFCGLARNMWPRNGRVQM 618
K S + +N K L Y G+ +
Sbjct: 111 KGPSPATNN---------------------------KHLKQY-------------GKFER 170
Query: 619 STMSSLTRKEKDELAIFCVAAILVLNRQKVIRETHSFDDMIK 660
+ + +E ++F VA++L + ++++ E DD++K
Sbjct: 171 KNVKTGHTEENSAPSVFLVASVLEIKNRRILNEAKGVDDVVK 296
>TC207341 similar to UP|Q9LQY6 (Q9LQY6) T24P13.4, partial (11%)
Length = 464
Score = 30.0 bits (66), Expect = 3.7
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 661 ASALIFCFYRVINYYYESHNCYTPITLFLLFMFILSGVEYLLGLDYVLIWKSEVGT 716
A LI V + + N T +LFM +LSG YL ++LIW+ + T
Sbjct: 220 ARTLIIWTTYVRRKFKDLKNLLTNA*NLILFMLLLSGTRYLNNRKFLLIWEKTLKT 387
>CD400529
Length = 722
Score = 29.6 bits (65), Expect = 4.9
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 35 CLSQSPVKVVVTVNRMLKPDKWQALSDSEGKVLGFRKALKLIVLGGVDPS 84
CLS S V V+ + +R L P+ + ++++ K G+ KLI+ DPS
Sbjct: 366 CLSNSCVIVIFSDSRCLVPNSARGVTEANLKKAGYHTWEKLILKDPQDPS 515
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,517,050
Number of Sequences: 63676
Number of extensions: 442424
Number of successful extensions: 2648
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 2546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2614
length of query: 717
length of database: 12,639,632
effective HSP length: 104
effective length of query: 613
effective length of database: 6,017,328
effective search space: 3688622064
effective search space used: 3688622064
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0106.7